Ggra4114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4114.t1
Unique NameGgra4114.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:161384..162775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704189.1
PFAMsGp_dh_C,Gp_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00149
KEGG koko:K05298
KEGG ReactionR01063
KEGG Pathwayko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166
Evalue4.87e-182
EggNOG OGsCOG0057@1|root,KOG0657@2759|Eukaryota
EC1.2.1.13
Descriptionglyceraldehyde-3-phosphate dehydrogenase (NAD(P) ) (phosphorylating) activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4114Ggra4114Gracilaria gracilis GNS1m malegenetig00000853_pilon 161384..162775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1Ggra4114.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 161384..162775 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1.stop1Ggra4114.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 161384..161386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1.CDS1Ggra4114.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 161384..162571 -
Ggra4114.t1.CDS2Ggra4114.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 162713..162775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1.exon1Ggra4114.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 161384..162571 -
Ggra4114.t1.exon2Ggra4114.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 162713..162775 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1.intron1Ggra4114.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 162572..162712 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4114.t1.start1Ggra4114.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 162773..162775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4114.t1 ID=Ggra4114.t1|Name=Ggra4114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MAFVAPVSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAF
GGVSDANDAFFNAVNTMGAPARTSNAPSMKVRVAINGFGRIGRNFIRCWA
GRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDVVAGEDSITVDGK
TIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLIT
APGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFG
VVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALV
VPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSM
KGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGY
SQRVVDLGEVMASQWK*
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spliced messenger RNA

>Ggra4114.t1 ID=Ggra4114.t1|Name=Ggra4114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000853_pilon:161384..162775- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTCGCACCCGTCTCCTCGGTGTTCTCCACCTCATCAAAGTC
CGCCGTGTGCAGCGGTCGCTCCAGCTTCGCCCAGTTCTCCGGACTGAAGA
AGGTGAACAACACTGCCCGCCTTCAAACCGCGGAGCAGGGTTCCGCCTTC
GGCGGAGTCTCTGACGCCAACGATGCGTTCTTCAATGCTGTCAACACAAT
GGGCGCTCCGGCCCGTACCTCCAATGCCCCCTCCATGAAAGTGCGTGTCG
CCATTAACGGTTTCGGTCGTATTGGTCGTAACTTTATCCGATGCTGGGCT
GGCCGTACCGACTCCAACATGGATGTCGTTTGCATTAACGATACATCTGG
TGTGAAGACTGCCTCTCATCTCTTGAAGTACGATTCCATCCTCGGTACAT
TCGACTCTGATGTCGTTGCCGGAGAGGACAGCATCACTGTCGACGGGAAG
ACCATCAAAGTTGTTTCCAACCGCAACCCGCTTGAGTTGCCCTGGAAGGA
AATGGAAATTGACATCGTTGTCGAGGCTACTGGTGTCTTTGTTGATGCAG
TTGGAGCTGGCAAGCACATTCAAGCCGGTGCAAAGAAGGTTCTCATTACC
GCACCTGGAAAGGGTGAAGGTGTTGGAACCTTCGTTGTCGGTGTCAATGA
CCACTTGTACTCACACGATAAGTTCGATATTGTGTCCAACGCTTCATGCA
CCACTAACTGCATGGCTCCGTTCATGAAGGTACTCGATGACGAATTCGGA
GTCGTCCGTGGAATGATGACCACCACTCACTCTTACACTGGCGACCAGAG
ATTGCTGGATGCCGGTCACCGCGATCTTCGCCGTGCTCGCTCAGCCGCCC
TCAACATTGTTCCCACCACCACCGGCGCCGCCAAGGCTGTTGCCCTCGTT
GTCCCTACTTTGGCTGGAAAGCTTAACGGTATTGCCCTTCGTGTCCCCAC
CCCGAACGTCTCCGTATGTGATGTTGTCATGCAAGTGAGCAAGAAGACGT
TCAAGGAGGAGGTCAATGGAGCTCTCCTCAAGGCTGCCAATGGCTCCATG
AAGGGTATCATCAAGTACTCTGATGAGCCTCTTGTATCATGTGACTACAG
AGGAACTGACGAATCTACCATCATTGACTCCTCCCTTACCATGGTCATGG
GCGATGACATGCTCAAGGTTGTCGCATGGTACGACAACGAATGGGGTTAC
TCTCAGCGTGTGGTCGATCTTGGTGAGGTGATGGCATCCCAGTGGAAGTA
G
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protein sequence of Ggra4114.t1

>Ggra4114.t1 ID=Ggra4114.t1|Name=Ggra4114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MAFVAPVSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAF
GGVSDANDAFFNAVNTMGAPARTSNAPSMKVRVAINGFGRIGRNFIRCWA
GRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDVVAGEDSITVDGK
TIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLIT
APGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFG
VVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALV
VPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSM
KGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGY
SQRVVDLGEVMASQWK*
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mRNA from alignment at tig00000853_pilon:161384..162775-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4114.t1 ID=Ggra4114.t1|Name=Ggra4114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000853_pilon:161384..162775- (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTCGCACCCGTCTCCTCGGTGTTCTCCACCTCATCAAAGTC
CGCCGTGTGCAGCGTAAGTTTCTTCCCACCATCTTCAACGAATCCTTGCA
TCCGCAATGATTAGGGGTGCTGTGCGAGCTTGAGCCGTCGATCCTTTGTG
CTGAATGCAAATTGAGTATACTGACTTTCTTTGCTTCCTGCATTATATCT
ACAGGGTCGCTCCAGCTTCGCCCAGTTCTCCGGACTGAAGAAGGTGAACA
ACACTGCCCGCCTTCAAACCGCGGAGCAGGGTTCCGCCTTCGGCGGAGTC
TCTGACGCCAACGATGCGTTCTTCAATGCTGTCAACACAATGGGCGCTCC
GGCCCGTACCTCCAATGCCCCCTCCATGAAAGTGCGTGTCGCCATTAACG
GTTTCGGTCGTATTGGTCGTAACTTTATCCGATGCTGGGCTGGCCGTACC
GACTCCAACATGGATGTCGTTTGCATTAACGATACATCTGGTGTGAAGAC
TGCCTCTCATCTCTTGAAGTACGATTCCATCCTCGGTACATTCGACTCTG
ATGTCGTTGCCGGAGAGGACAGCATCACTGTCGACGGGAAGACCATCAAA
GTTGTTTCCAACCGCAACCCGCTTGAGTTGCCCTGGAAGGAAATGGAAAT
TGACATCGTTGTCGAGGCTACTGGTGTCTTTGTTGATGCAGTTGGAGCTG
GCAAGCACATTCAAGCCGGTGCAAAGAAGGTTCTCATTACCGCACCTGGA
AAGGGTGAAGGTGTTGGAACCTTCGTTGTCGGTGTCAATGACCACTTGTA
CTCACACGATAAGTTCGATATTGTGTCCAACGCTTCATGCACCACTAACT
GCATGGCTCCGTTCATGAAGGTACTCGATGACGAATTCGGAGTCGTCCGT
GGAATGATGACCACCACTCACTCTTACACTGGCGACCAGAGATTGCTGGA
TGCCGGTCACCGCGATCTTCGCCGTGCTCGCTCAGCCGCCCTCAACATTG
TTCCCACCACCACCGGCGCCGCCAAGGCTGTTGCCCTCGTTGTCCCTACT
TTGGCTGGAAAGCTTAACGGTATTGCCCTTCGTGTCCCCACCCCGAACGT
CTCCGTATGTGATGTTGTCATGCAAGTGAGCAAGAAGACGTTCAAGGAGG
AGGTCAATGGAGCTCTCCTCAAGGCTGCCAATGGCTCCATGAAGGGTATC
ATCAAGTACTCTGATGAGCCTCTTGTATCATGTGACTACAGAGGAACTGA
CGAATCTACCATCATTGACTCCTCCCTTACCATGGTCATGGGCGATGACA
TGCTCAAGGTTGTCGCATGGTACGACAACGAATGGGGTTACTCTCAGCGT
GTGGTCGATCTTGGTGAGGTGATGGCATCCCAGTGGAAGTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:161384..162775-

>Ggra4114.t1 ID=Ggra4114.t1|Name=Ggra4114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000853_pilon:161384..162775- (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTCGCACCCGTCTCCTCGGTGTTCTCCACCTCATCAAAGTC
CGCCGTGTGCAGCGGTCGCTCCAGCTTCGCCCAGTTCTCCGGACTGAAGA
AGGTGAACAACACTGCCCGCCTTCAAACCGCGGAGCAGGGTTCCGCCTTC
GGCGGAGTCTCTGACGCCAACGATGCGTTCTTCAATGCTGTCAACACAAT
GGGCGCTCCGGCCCGTACCTCCAATGCCCCCTCCATGAAAGTGCGTGTCG
CCATTAACGGTTTCGGTCGTATTGGTCGTAACTTTATCCGATGCTGGGCT
GGCCGTACCGACTCCAACATGGATGTCGTTTGCATTAACGATACATCTGG
TGTGAAGACTGCCTCTCATCTCTTGAAGTACGATTCCATCCTCGGTACAT
TCGACTCTGATGTCGTTGCCGGAGAGGACAGCATCACTGTCGACGGGAAG
ACCATCAAAGTTGTTTCCAACCGCAACCCGCTTGAGTTGCCCTGGAAGGA
AATGGAAATTGACATCGTTGTCGAGGCTACTGGTGTCTTTGTTGATGCAG
TTGGAGCTGGCAAGCACATTCAAGCCGGTGCAAAGAAGGTTCTCATTACC
GCACCTGGAAAGGGTGAAGGTGTTGGAACCTTCGTTGTCGGTGTCAATGA
CCACTTGTACTCACACGATAAGTTCGATATTGTGTCCAACGCTTCATGCA
CCACTAACTGCATGGCTCCGTTCATGAAGGTACTCGATGACGAATTCGGA
GTCGTCCGTGGAATGATGACCACCACTCACTCTTACACTGGCGACCAGAG
ATTGCTGGATGCCGGTCACCGCGATCTTCGCCGTGCTCGCTCAGCCGCCC
TCAACATTGTTCCCACCACCACCGGCGCCGCCAAGGCTGTTGCCCTCGTT
GTCCCTACTTTGGCTGGAAAGCTTAACGGTATTGCCCTTCGTGTCCCCAC
CCCGAACGTCTCCGTATGTGATGTTGTCATGCAAGTGAGCAAGAAGACGT
TCAAGGAGGAGGTCAATGGAGCTCTCCTCAAGGCTGCCAATGGCTCCATG
AAGGGTATCATCAAGTACTCTGATGAGCCTCTTGTATCATGTGACTACAG
AGGAACTGACGAATCTACCATCATTGACTCCTCCCTTACCATGGTCATGG
GCGATGACATGCTCAAGGTTGTCGCATGGTACGACAACGAATGGGGTTAC
TCTCAGCGTGTGGTCGATCTTGGTGAGGTGATGGCATCCCAGTGGAAGTA
G
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