Ggra4113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4113.t1
Unique NameGgra4113.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:159320..160732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008861903.1
Preferred nameDDX47
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K14777
KEGG Pathwayko04530,map04530
GOsGO:0000339,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0012501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0023052,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.55e-177
EggNOG OGsCOG0513@1|root,KOG0330@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4113Ggra4113Gracilaria gracilis GNS1m malegenetig00000853_pilon 159320..160732 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4113.t1.start1Ggra4113.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 159320..159322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4113.t1.CDS1Ggra4113.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 159320..160732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4113.t1.exon1Ggra4113.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 159320..160732 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4113.t1.stop1Ggra4113.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 160730..160732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4113.t1Ggra4113.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 159320..160732 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4113.t1 ID=Ggra4113.t1|Name=Ggra4113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MSPSPTETKTAPGDEDEVQKSFGDLGVCPELVEACEKLGYVRPTPVQAES
IPHALEGKDIIGLAQTGSGKTAAFAIPILQALLGEKGKPPSPYALVLSPT
RELAFQIHEQFEALGSGIGARCITICGGVDQMAQAVALAKRPHIIVATPG
RLVDHLENTKGFSLRAAKFLVLDEADRILTMDFEKELEKVVSCMPRERRT
YLFSATMTSKVKKLQRASLSNPVRIEVSSKYKTVDTLVQNYLFIPEKFKD
CYLVFLLTEFAGNSAIVFVDTQRHAQRITIMLRALGIGAVCIHGGMAQPK
RLAALTKFKAGDRSILVATDVASRGLDIPRVDIVVNYDIPNNGKDYVHRV
GRTARAGRAGRALNLVSQYDLHNYREVEELIGKKLDEYCLEEATVLLMLE
RVAEAQRIAVSELKELNEKKRWRKGKRREAADDDQVKLAENIGEGAASLV
SADTQKLKGPRARKRRRITS*
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spliced messenger RNA

>Ggra4113.t1 ID=Ggra4113.t1|Name=Ggra4113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000853_pilon:159320..160732+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCAAGTCCTACAGAAACCAAAACGGCACCAGGCGACGAGGATGA
AGTGCAAAAGAGTTTTGGGGACTTAGGAGTTTGCCCAGAGCTCGTCGAAG
CATGCGAGAAACTTGGATACGTGCGGCCAACACCTGTTCAGGCAGAATCC
ATTCCCCATGCGTTGGAGGGTAAAGACATAATTGGTCTCGCACAAACCGG
CTCGGGCAAAACGGCGGCATTTGCAATTCCAATTCTCCAAGCACTCTTGG
GGGAAAAAGGAAAGCCCCCGTCCCCGTATGCTCTGGTTTTATCCCCAACA
AGAGAACTTGCGTTTCAGATTCATGAGCAGTTTGAGGCTTTAGGGTCTGG
AATTGGTGCAAGATGTATAACAATATGTGGTGGTGTGGATCAAATGGCCC
AGGCAGTGGCTCTTGCGAAGCGTCCACATATTATTGTTGCAACACCCGGT
CGATTGGTGGATCACCTCGAAAACACAAAAGGCTTTTCCCTTCGTGCTGC
CAAGTTCTTAGTGTTGGATGAAGCAGACCGAATTCTTACAATGGACTTTG
AGAAGGAACTTGAGAAGGTTGTAAGTTGCATGCCTCGAGAACGACGCACG
TATCTTTTCTCCGCGACTATGACTTCCAAGGTGAAAAAACTTCAACGTGC
TTCGCTTTCTAATCCTGTACGAATAGAAGTGTCGAGCAAGTACAAAACAG
TAGATACATTGGTGCAAAACTATCTCTTTATTCCTGAGAAGTTCAAGGAT
TGCTATCTGGTTTTCCTCTTAACCGAGTTTGCGGGAAATTCGGCTATTGT
ATTTGTTGATACGCAACGCCATGCGCAGAGAATAACAATTATGCTCAGGG
CCTTGGGCATAGGAGCCGTGTGCATTCACGGCGGAATGGCACAGCCGAAG
CGATTGGCTGCTCTGACAAAGTTTAAGGCTGGTGACCGTAGCATCCTGGT
AGCAACAGATGTTGCCAGTCGAGGACTTGATATACCGCGTGTTGACATAG
TCGTCAACTATGATATTCCAAACAACGGAAAGGACTATGTGCACAGGGTG
GGTCGAACTGCTCGAGCAGGCCGGGCCGGTAGAGCCCTGAACCTTGTATC
TCAGTACGATTTGCACAACTATCGTGAGGTAGAAGAACTGATAGGGAAGA
AACTCGATGAGTATTGTCTTGAAGAAGCGACAGTGTTATTGATGCTTGAA
CGAGTCGCTGAGGCGCAACGAATAGCTGTGTCTGAGCTTAAGGAACTGAA
CGAAAAGAAGAGGTGGAGGAAGGGTAAACGACGAGAGGCGGCAGATGACG
ACCAGGTAAAGCTTGCCGAGAATATCGGAGAAGGAGCTGCATCATTGGTA
AGTGCAGACACACAAAAACTGAAAGGACCAAGAGCGCGGAAACGACGCCG
AATAACATCATGA
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protein sequence of Ggra4113.t1

>Ggra4113.t1 ID=Ggra4113.t1|Name=Ggra4113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MSPSPTETKTAPGDEDEVQKSFGDLGVCPELVEACEKLGYVRPTPVQAES
IPHALEGKDIIGLAQTGSGKTAAFAIPILQALLGEKGKPPSPYALVLSPT
RELAFQIHEQFEALGSGIGARCITICGGVDQMAQAVALAKRPHIIVATPG
RLVDHLENTKGFSLRAAKFLVLDEADRILTMDFEKELEKVVSCMPRERRT
YLFSATMTSKVKKLQRASLSNPVRIEVSSKYKTVDTLVQNYLFIPEKFKD
CYLVFLLTEFAGNSAIVFVDTQRHAQRITIMLRALGIGAVCIHGGMAQPK
RLAALTKFKAGDRSILVATDVASRGLDIPRVDIVVNYDIPNNGKDYVHRV
GRTARAGRAGRALNLVSQYDLHNYREVEELIGKKLDEYCLEEATVLLMLE
RVAEAQRIAVSELKELNEKKRWRKGKRREAADDDQVKLAENIGEGAASLV
SADTQKLKGPRARKRRRITS*
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mRNA from alignment at tig00000853_pilon:159320..160732+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4113.t1 ID=Ggra4113.t1|Name=Ggra4113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000853_pilon:159320..160732+ (Gracilaria gracilis GNS1m male)
ATGAGCCCAAGTCCTACAGAAACCAAAACGGCACCAGGCGACGAGGATGA
AGTGCAAAAGAGTTTTGGGGACTTAGGAGTTTGCCCAGAGCTCGTCGAAG
CATGCGAGAAACTTGGATACGTGCGGCCAACACCTGTTCAGGCAGAATCC
ATTCCCCATGCGTTGGAGGGTAAAGACATAATTGGTCTCGCACAAACCGG
CTCGGGCAAAACGGCGGCATTTGCAATTCCAATTCTCCAAGCACTCTTGG
GGGAAAAAGGAAAGCCCCCGTCCCCGTATGCTCTGGTTTTATCCCCAACA
AGAGAACTTGCGTTTCAGATTCATGAGCAGTTTGAGGCTTTAGGGTCTGG
AATTGGTGCAAGATGTATAACAATATGTGGTGGTGTGGATCAAATGGCCC
AGGCAGTGGCTCTTGCGAAGCGTCCACATATTATTGTTGCAACACCCGGT
CGATTGGTGGATCACCTCGAAAACACAAAAGGCTTTTCCCTTCGTGCTGC
CAAGTTCTTAGTGTTGGATGAAGCAGACCGAATTCTTACAATGGACTTTG
AGAAGGAACTTGAGAAGGTTGTAAGTTGCATGCCTCGAGAACGACGCACG
TATCTTTTCTCCGCGACTATGACTTCCAAGGTGAAAAAACTTCAACGTGC
TTCGCTTTCTAATCCTGTACGAATAGAAGTGTCGAGCAAGTACAAAACAG
TAGATACATTGGTGCAAAACTATCTCTTTATTCCTGAGAAGTTCAAGGAT
TGCTATCTGGTTTTCCTCTTAACCGAGTTTGCGGGAAATTCGGCTATTGT
ATTTGTTGATACGCAACGCCATGCGCAGAGAATAACAATTATGCTCAGGG
CCTTGGGCATAGGAGCCGTGTGCATTCACGGCGGAATGGCACAGCCGAAG
CGATTGGCTGCTCTGACAAAGTTTAAGGCTGGTGACCGTAGCATCCTGGT
AGCAACAGATGTTGCCAGTCGAGGACTTGATATACCGCGTGTTGACATAG
TCGTCAACTATGATATTCCAAACAACGGAAAGGACTATGTGCACAGGGTG
GGTCGAACTGCTCGAGCAGGCCGGGCCGGTAGAGCCCTGAACCTTGTATC
TCAGTACGATTTGCACAACTATCGTGAGGTAGAAGAACTGATAGGGAAGA
AACTCGATGAGTATTGTCTTGAAGAAGCGACAGTGTTATTGATGCTTGAA
CGAGTCGCTGAGGCGCAACGAATAGCTGTGTCTGAGCTTAAGGAACTGAA
CGAAAAGAAGAGGTGGAGGAAGGGTAAACGACGAGAGGCGGCAGATGACG
ACCAGGTAAAGCTTGCCGAGAATATCGGAGAAGGAGCTGCATCATTGGTA
AGTGCAGACACACAAAAACTGAAAGGACCAAGAGCGCGGAAACGACGCCG
AATAACATCATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:159320..160732+

>Ggra4113.t1 ID=Ggra4113.t1|Name=Ggra4113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000853_pilon:159320..160732+ (Gracilaria gracilis GNS1m male)
ATGAGCCCAAGTCCTACAGAAACCAAAACGGCACCAGGCGACGAGGATGA
AGTGCAAAAGAGTTTTGGGGACTTAGGAGTTTGCCCAGAGCTCGTCGAAG
CATGCGAGAAACTTGGATACGTGCGGCCAACACCTGTTCAGGCAGAATCC
ATTCCCCATGCGTTGGAGGGTAAAGACATAATTGGTCTCGCACAAACCGG
CTCGGGCAAAACGGCGGCATTTGCAATTCCAATTCTCCAAGCACTCTTGG
GGGAAAAAGGAAAGCCCCCGTCCCCGTATGCTCTGGTTTTATCCCCAACA
AGAGAACTTGCGTTTCAGATTCATGAGCAGTTTGAGGCTTTAGGGTCTGG
AATTGGTGCAAGATGTATAACAATATGTGGTGGTGTGGATCAAATGGCCC
AGGCAGTGGCTCTTGCGAAGCGTCCACATATTATTGTTGCAACACCCGGT
CGATTGGTGGATCACCTCGAAAACACAAAAGGCTTTTCCCTTCGTGCTGC
CAAGTTCTTAGTGTTGGATGAAGCAGACCGAATTCTTACAATGGACTTTG
AGAAGGAACTTGAGAAGGTTGTAAGTTGCATGCCTCGAGAACGACGCACG
TATCTTTTCTCCGCGACTATGACTTCCAAGGTGAAAAAACTTCAACGTGC
TTCGCTTTCTAATCCTGTACGAATAGAAGTGTCGAGCAAGTACAAAACAG
TAGATACATTGGTGCAAAACTATCTCTTTATTCCTGAGAAGTTCAAGGAT
TGCTATCTGGTTTTCCTCTTAACCGAGTTTGCGGGAAATTCGGCTATTGT
ATTTGTTGATACGCAACGCCATGCGCAGAGAATAACAATTATGCTCAGGG
CCTTGGGCATAGGAGCCGTGTGCATTCACGGCGGAATGGCACAGCCGAAG
CGATTGGCTGCTCTGACAAAGTTTAAGGCTGGTGACCGTAGCATCCTGGT
AGCAACAGATGTTGCCAGTCGAGGACTTGATATACCGCGTGTTGACATAG
TCGTCAACTATGATATTCCAAACAACGGAAAGGACTATGTGCACAGGGTG
GGTCGAACTGCTCGAGCAGGCCGGGCCGGTAGAGCCCTGAACCTTGTATC
TCAGTACGATTTGCACAACTATCGTGAGGTAGAAGAACTGATAGGGAAGA
AACTCGATGAGTATTGTCTTGAAGAAGCGACAGTGTTATTGATGCTTGAA
CGAGTCGCTGAGGCGCAACGAATAGCTGTGTCTGAGCTTAAGGAACTGAA
CGAAAAGAAGAGGTGGAGGAAGGGTAAACGACGAGAGGCGGCAGATGACG
ACCAGGTAAAGCTTGCCGAGAATATCGGAGAAGGAGCTGCATCATTGGTA
AGTGCAGACACACAAAAACTGAAAGGACCAAGAGCGCGGAAACGACGCCG
AATAACATCATGA
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