Ggra4112.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4112.t1
Unique NameGgra4112.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:157892..158698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX40265
Preferred nameHY2
PFAMsFe_bilin_red
Max annot lvl2759|Eukaryota
KEGG rclassRC01574
KEGG koko:K08101
KEGG ReactionR03678
KEGG Pathwayko00860,ko01110,map00860,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010019,GO:0016491,GO:0016627,GO:0016636,GO:0023052,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050619,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007
Evalue4.8e-127
EggNOG OGs28QRX@1|root,2QXET@2759|Eukaryota
EC1.3.7.4
Descriptionphytochromobilin:ferredoxin oxidoreductase activity
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4112Ggra4112Gracilaria gracilis GNS1m malegenetig00000853_pilon 157892..158698 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4112.t1.stop1Ggra4112.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 157892..157894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4112.t1.CDS1Ggra4112.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 157892..158698 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4112.t1.exon1Ggra4112.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 157892..158698 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4112.t1.start1Ggra4112.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 158696..158698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4112.t1Ggra4112.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 157892..158698 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4112.t1 ID=Ggra4112.t1|Name=Ggra4112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MSAVETSTPQAPKPVKDIYTPFWNHATSVLKARLPDLAPYPIPEGFEHKE
AMVGKGKRENLVTTDSYAYCTPKLRQIRTAHVQGGKALQVLNFVMFPGME
YDLPFFGADLVTLPGGHLIALDMQPLFHNDDYRAKYSKPLETTFQKHQEN
LPWGGDFPEEAARFFSPNFLWSRPSEDDVVETHVFEAFKDYLNKYLDFVE
DAKPVSDPDRLVKIKESQIAYLNYRAEKDPARGMFLRFYGEEWTEEYIHG
FLFDLERKIGNGEYKPPS*
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spliced messenger RNA

>Ggra4112.t1 ID=Ggra4112.t1|Name=Ggra4112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000853_pilon:157892..158698- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGGTCGAGACATCGACTCCGCAAGCACCAAAACCTGTAAAAGA
TATCTACACACCGTTTTGGAATCATGCAACGTCGGTCTTAAAGGCTAGGC
TCCCAGATTTGGCACCATATCCCATCCCGGAAGGTTTCGAACATAAAGAA
GCTATGGTGGGGAAGGGGAAACGGGAAAACCTAGTCACGACAGATTCTTA
TGCATATTGCACCCCAAAGTTAAGACAAATTCGCACAGCTCACGTGCAAG
GGGGAAAAGCGTTGCAGGTTTTGAACTTCGTCATGTTTCCCGGTATGGAG
TACGACCTTCCATTTTTTGGGGCTGATCTTGTTACACTGCCGGGAGGTCA
TTTAATTGCTCTTGATATGCAACCTTTGTTCCATAATGACGATTATCGTG
CCAAATATTCCAAACCCCTAGAAACCACCTTTCAGAAACATCAGGAAAAC
CTACCATGGGGTGGAGACTTTCCTGAAGAGGCAGCTCGTTTCTTTTCCCC
TAATTTCTTATGGAGTCGACCTTCTGAGGACGACGTTGTCGAGACACATG
TGTTTGAAGCTTTCAAAGATTACCTGAACAAGTACTTGGATTTTGTTGAA
GATGCGAAACCAGTTTCTGACCCAGACAGATTGGTGAAGATAAAGGAAAG
TCAGATCGCGTATCTTAATTATCGGGCAGAAAAGGATCCTGCGCGAGGAA
TGTTTCTACGTTTCTACGGAGAAGAATGGACAGAGGAATATATACACGGC
TTCTTGTTCGATCTGGAACGAAAGATTGGGAATGGAGAATATAAGCCTCC
TTCGTAA
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protein sequence of Ggra4112.t1

>Ggra4112.t1 ID=Ggra4112.t1|Name=Ggra4112.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MSAVETSTPQAPKPVKDIYTPFWNHATSVLKARLPDLAPYPIPEGFEHKE
AMVGKGKRENLVTTDSYAYCTPKLRQIRTAHVQGGKALQVLNFVMFPGME
YDLPFFGADLVTLPGGHLIALDMQPLFHNDDYRAKYSKPLETTFQKHQEN
LPWGGDFPEEAARFFSPNFLWSRPSEDDVVETHVFEAFKDYLNKYLDFVE
DAKPVSDPDRLVKIKESQIAYLNYRAEKDPARGMFLRFYGEEWTEEYIHG
FLFDLERKIGNGEYKPPS*
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mRNA from alignment at tig00000853_pilon:157892..158698-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4112.t1 ID=Ggra4112.t1|Name=Ggra4112.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000853_pilon:157892..158698- (Gracilaria gracilis GNS1m male)
ATGTCTGCGGTCGAGACATCGACTCCGCAAGCACCAAAACCTGTAAAAGA
TATCTACACACCGTTTTGGAATCATGCAACGTCGGTCTTAAAGGCTAGGC
TCCCAGATTTGGCACCATATCCCATCCCGGAAGGTTTCGAACATAAAGAA
GCTATGGTGGGGAAGGGGAAACGGGAAAACCTAGTCACGACAGATTCTTA
TGCATATTGCACCCCAAAGTTAAGACAAATTCGCACAGCTCACGTGCAAG
GGGGAAAAGCGTTGCAGGTTTTGAACTTCGTCATGTTTCCCGGTATGGAG
TACGACCTTCCATTTTTTGGGGCTGATCTTGTTACACTGCCGGGAGGTCA
TTTAATTGCTCTTGATATGCAACCTTTGTTCCATAATGACGATTATCGTG
CCAAATATTCCAAACCCCTAGAAACCACCTTTCAGAAACATCAGGAAAAC
CTACCATGGGGTGGAGACTTTCCTGAAGAGGCAGCTCGTTTCTTTTCCCC
TAATTTCTTATGGAGTCGACCTTCTGAGGACGACGTTGTCGAGACACATG
TGTTTGAAGCTTTCAAAGATTACCTGAACAAGTACTTGGATTTTGTTGAA
GATGCGAAACCAGTTTCTGACCCAGACAGATTGGTGAAGATAAAGGAAAG
TCAGATCGCGTATCTTAATTATCGGGCAGAAAAGGATCCTGCGCGAGGAA
TGTTTCTACGTTTCTACGGAGAAGAATGGACAGAGGAATATATACACGGC
TTCTTGTTCGATCTGGAACGAAAGATTGGGAATGGAGAATATAAGCCTCC
TTCGTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:157892..158698-

>Ggra4112.t1 ID=Ggra4112.t1|Name=Ggra4112.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000853_pilon:157892..158698- (Gracilaria gracilis GNS1m male)
ATGTCTGCGGTCGAGACATCGACTCCGCAAGCACCAAAACCTGTAAAAGA
TATCTACACACCGTTTTGGAATCATGCAACGTCGGTCTTAAAGGCTAGGC
TCCCAGATTTGGCACCATATCCCATCCCGGAAGGTTTCGAACATAAAGAA
GCTATGGTGGGGAAGGGGAAACGGGAAAACCTAGTCACGACAGATTCTTA
TGCATATTGCACCCCAAAGTTAAGACAAATTCGCACAGCTCACGTGCAAG
GGGGAAAAGCGTTGCAGGTTTTGAACTTCGTCATGTTTCCCGGTATGGAG
TACGACCTTCCATTTTTTGGGGCTGATCTTGTTACACTGCCGGGAGGTCA
TTTAATTGCTCTTGATATGCAACCTTTGTTCCATAATGACGATTATCGTG
CCAAATATTCCAAACCCCTAGAAACCACCTTTCAGAAACATCAGGAAAAC
CTACCATGGGGTGGAGACTTTCCTGAAGAGGCAGCTCGTTTCTTTTCCCC
TAATTTCTTATGGAGTCGACCTTCTGAGGACGACGTTGTCGAGACACATG
TGTTTGAAGCTTTCAAAGATTACCTGAACAAGTACTTGGATTTTGTTGAA
GATGCGAAACCAGTTTCTGACCCAGACAGATTGGTGAAGATAAAGGAAAG
TCAGATCGCGTATCTTAATTATCGGGCAGAAAAGGATCCTGCGCGAGGAA
TGTTTCTACGTTTCTACGGAGAAGAATGGACAGAGGAATATATACACGGC
TTCTTGTTCGATCTGGAACGAAAGATTGGGAATGGAGAATATAAGCCTCC
TTCGTAA
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