Ggra4111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4111.t1
Unique NameGgra4111.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:156900..157612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705340.1
Preferred namerpl12
PFAMsRibosomal_L11,Ribosomal_L11_N
Max annot lvl2759|Eukaryota
KEGG koko:K02870,ko:K14006
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG ModuleM00177,M00404
GOsGO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030054,GO:0030684,GO:0030687,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
Evalue1.31e-86
EggNOG OGsCOG0080@1|root,KOG0886@2759|Eukaryota
Descriptionribosomal large subunit assembly
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4111Ggra4111Gracilaria gracilis GNS1m malegenetig00000853_pilon 156900..157612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1Ggra4111.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 156900..157612 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1.start1Ggra4111.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 156900..156902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1.CDS1Ggra4111.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 156900..157010 +
Ggra4111.t1.CDS2Ggra4111.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 157196..157612 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1.exon1Ggra4111.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 156900..157010 +
Ggra4111.t1.exon2Ggra4111.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 157196..157612 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1.intron1Ggra4111.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 157011..157195 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4111.t1.stop1Ggra4111.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 157610..157612 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4111.t1 ID=Ggra4111.t1|Name=Ggra4111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MPPKFDPNSVTVIYVRTTGGEVGAVASLAPKIGPLGLSPKKIGDQLAKAT
KDWKGLRVMCKLAVQNRQATVTVTPSAASMIIKALKEPPRDRKKVKDVPH
DGNLTLDAVIEIAKQCRGRSLAKHMKGTVKEVLGTAQSVGCTVDGQPPHD
IIDQINDGSMEIDDYEAPKQEEEES*
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spliced messenger RNA

>Ggra4111.t1 ID=Ggra4111.t1|Name=Ggra4111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000853_pilon:156900..157612+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGAAGTTTGATCCTAACTCAGTCACCGTCATTTATGTGCGAAC
AACCGGTGGTGAAGTTGGTGCTGTTGCATCTCTTGCCCCCAAGATTGGTC
CGCTCGGTCTGAGTCCTAAGAAGATCGGTGATCAACTAGCGAAAGCAACG
AAAGACTGGAAGGGTCTTCGCGTAATGTGCAAGCTGGCCGTACAGAACAG
ACAAGCAACCGTAACCGTAACCCCTTCTGCTGCATCTATGATCATTAAAG
CTTTGAAGGAGCCCCCACGCGATCGGAAAAAGGTTAAGGACGTTCCTCAT
GACGGAAATCTCACTCTGGATGCCGTCATTGAGATTGCGAAGCAATGTCG
TGGACGCTCTCTCGCTAAGCACATGAAGGGTACAGTCAAGGAAGTCTTGG
GCACAGCCCAAAGTGTTGGGTGCACGGTTGACGGCCAGCCACCACACGAC
ATCATCGATCAGATCAATGATGGTTCAATGGAAATCGATGACTATGAGGC
ACCCAAACAAGAAGAAGAAGAGTCTTGA
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protein sequence of Ggra4111.t1

>Ggra4111.t1 ID=Ggra4111.t1|Name=Ggra4111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MPPKFDPNSVTVIYVRTTGGEVGAVASLAPKIGPLGLSPKKIGDQLAKAT
KDWKGLRVMCKLAVQNRQATVTVTPSAASMIIKALKEPPRDRKKVKDVPH
DGNLTLDAVIEIAKQCRGRSLAKHMKGTVKEVLGTAQSVGCTVDGQPPHD
IIDQINDGSMEIDDYEAPKQEEEES*
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mRNA from alignment at tig00000853_pilon:156900..157612+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4111.t1 ID=Ggra4111.t1|Name=Ggra4111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=713bp|location=Sequence derived from alignment at tig00000853_pilon:156900..157612+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGAAGTTTGATCCTAACTCAGTCACCGTCATTTATGTGCGAAC
AACCGGTGGTGAAGTTGGTGCTGTTGCATCTCTTGCCCCCAAGATTGGTC
CGCTCGGTCTGGTAAGTTTTCTTCGCGCTCAGCGGACGTTTGTGGGACAT
CGCAAGCTTCATGTCGAGCAAAAGTGGTGAGAGGATGAATACCCTTCTTC
ACTTGTCTATCGGGATGGCATGGTTTCTAACATTAGGGTCGTATTTCTAT
CTTAACTTAATCGTTTTAATCTCTAATTGCGGCTGCGTGGAATCAGAGTC
CTAAGAAGATCGGTGATCAACTAGCGAAAGCAACGAAAGACTGGAAGGGT
CTTCGCGTAATGTGCAAGCTGGCCGTACAGAACAGACAAGCAACCGTAAC
CGTAACCCCTTCTGCTGCATCTATGATCATTAAAGCTTTGAAGGAGCCCC
CACGCGATCGGAAAAAGGTTAAGGACGTTCCTCATGACGGAAATCTCACT
CTGGATGCCGTCATTGAGATTGCGAAGCAATGTCGTGGACGCTCTCTCGC
TAAGCACATGAAGGGTACAGTCAAGGAAGTCTTGGGCACAGCCCAAAGTG
TTGGGTGCACGGTTGACGGCCAGCCACCACACGACATCATCGATCAGATC
AATGATGGTTCAATGGAAATCGATGACTATGAGGCACCCAAACAAGAAGA
AGAAGAGTCTTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:156900..157612+

>Ggra4111.t1 ID=Ggra4111.t1|Name=Ggra4111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000853_pilon:156900..157612+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGAAGTTTGATCCTAACTCAGTCACCGTCATTTATGTGCGAAC
AACCGGTGGTGAAGTTGGTGCTGTTGCATCTCTTGCCCCCAAGATTGGTC
CGCTCGGTCTGAGTCCTAAGAAGATCGGTGATCAACTAGCGAAAGCAACG
AAAGACTGGAAGGGTCTTCGCGTAATGTGCAAGCTGGCCGTACAGAACAG
ACAAGCAACCGTAACCGTAACCCCTTCTGCTGCATCTATGATCATTAAAG
CTTTGAAGGAGCCCCCACGCGATCGGAAAAAGGTTAAGGACGTTCCTCAT
GACGGAAATCTCACTCTGGATGCCGTCATTGAGATTGCGAAGCAATGTCG
TGGACGCTCTCTCGCTAAGCACATGAAGGGTACAGTCAAGGAAGTCTTGG
GCACAGCCCAAAGTGTTGGGTGCACGGTTGACGGCCAGCCACCACACGAC
ATCATCGATCAGATCAATGATGGTTCAATGGAAATCGATGACTATGAGGC
ACCCAAACAAGAAGAAGAAGAGTCTTGA
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