Ggra4110.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4110.t1
Unique NameGgra4110.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:156162..156482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1561998.Csp11.Scaffold629.g14869.t1
Preferred nameRPLP2
PFAMsRibosomal_60s
Max annot lvl33208|Metazoa
KEGG koko:K02943
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042886,GO:0043021,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045727,GO:0046483,GO:0046683,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904400,GO:1904401,GO:1904587,GO:1904588,GO:1990904,GO:2000112
Evalue4e-18
EggNOG OGsCOG2058@1|root,KOG3449@2759|Eukaryota,3A5KC@33154|Opisthokonta,3BRFB@33208|Metazoa,3D8BP@33213|Bilateria,40GRH@6231|Nematoda,1KZM1@119089|Chromadorea,415UG@6236|Rhabditida
DescriptionBelongs to the eukaryotic ribosomal protein P1 P2 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4110Ggra4110Gracilaria gracilis GNS1m malegenetig00000853_pilon 156162..156482 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4110.t1.stop1Ggra4110.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 156162..156164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4110.t1.CDS1Ggra4110.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 156162..156482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4110.t1.exon1Ggra4110.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 156162..156482 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4110.t1.start1Ggra4110.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 156480..156482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4110.t1Ggra4110.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 156162..156482 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4110.t1 ID=Ggra4110.t1|Name=Ggra4110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=107bp
MKYLGAYMLAYLGGNTSPSSDDIKKILESAGVDIDEDVLSKVMTQFQEKS
IMDCMEEGKSKLASVPSGGAASGGGGAAAEEAPQEEEQKEESEEEEEEEM
DFDLFD*
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spliced messenger RNA

>Ggra4110.t1 ID=Ggra4110.t1|Name=Ggra4110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000853_pilon:156162..156482- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTATCTCGGTGCTTACATGCTTGCCTATTTGGGCGGTAACACATC
CCCGTCTAGCGACGACATTAAGAAGATTCTTGAATCCGCCGGTGTCGACA
TTGATGAAGATGTGCTTAGCAAAGTGATGACGCAGTTCCAAGAGAAGAGC
ATTATGGATTGCATGGAAGAAGGTAAATCAAAGCTTGCATCAGTGCCTTC
CGGGGGAGCTGCCTCAGGAGGTGGTGGCGCTGCGGCGGAAGAAGCACCGC
AAGAGGAGGAACAAAAGGAAGAATCAGAAGAGGAAGAAGAGGAGGAAATG
GACTTCGATCTGTTCGATTAG
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protein sequence of Ggra4110.t1

>Ggra4110.t1 ID=Ggra4110.t1|Name=Ggra4110.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=107bp
MKYLGAYMLAYLGGNTSPSSDDIKKILESAGVDIDEDVLSKVMTQFQEKS
IMDCMEEGKSKLASVPSGGAASGGGGAAAEEAPQEEEQKEESEEEEEEEM
DFDLFD*
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mRNA from alignment at tig00000853_pilon:156162..156482-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4110.t1 ID=Ggra4110.t1|Name=Ggra4110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00000853_pilon:156162..156482- (Gracilaria gracilis GNS1m male)
ATGAAGTATCTCGGTGCTTACATGCTTGCCTATTTGGGCGGTAACACATC
CCCGTCTAGCGACGACATTAAGAAGATTCTTGAATCCGCCGGTGTCGACA
TTGATGAAGATGTGCTTAGCAAAGTGATGACGCAGTTCCAAGAGAAGAGC
ATTATGGATTGCATGGAAGAAGGTAAATCAAAGCTTGCATCAGTGCCTTC
CGGGGGAGCTGCCTCAGGAGGTGGTGGCGCTGCGGCGGAAGAAGCACCGC
AAGAGGAGGAACAAAAGGAAGAATCAGAAGAGGAAGAAGAGGAGGAAATG
GACTTCGATCTGTTCGATTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:156162..156482-

>Ggra4110.t1 ID=Ggra4110.t1|Name=Ggra4110.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=321bp|location=Sequence derived from alignment at tig00000853_pilon:156162..156482- (Gracilaria gracilis GNS1m male)
ATGAAGTATCTCGGTGCTTACATGCTTGCCTATTTGGGCGGTAACACATC
CCCGTCTAGCGACGACATTAAGAAGATTCTTGAATCCGCCGGTGTCGACA
TTGATGAAGATGTGCTTAGCAAAGTGATGACGCAGTTCCAAGAGAAGAGC
ATTATGGATTGCATGGAAGAAGGTAAATCAAAGCTTGCATCAGTGCCTTC
CGGGGGAGCTGCCTCAGGAGGTGGTGGCGCTGCGGCGGAAGAAGCACCGC
AAGAGGAGGAACAAAAGGAAGAATCAGAAGAGGAAGAAGAGGAGGAAATG
GACTTCGATCTGTTCGATTAG
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