Ggra411.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra411.t1
Unique NameGgra411.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:64282..65673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35738
Preferred nameftsH
PFAMsAAA,FtsH_ext,Peptidase_M41
Max annot lvl2759|Eukaryota
KEGG koko:K03798
KEGG ModuleM00742
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010027,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0061024,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0072593,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Evalue1.83e-275
EggNOG OGsCOG0465@1|root,KOG0731@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryO
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra411Ggra411Gracilaria gracilis GNS1m malegenetig00000928_pilon 64282..65673 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra411.t1.stop1Ggra411.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 64282..64284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra411.t1.CDS1Ggra411.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 64282..65673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra411.t1.exon1Ggra411.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 64282..65673 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra411.t1.start1Ggra411.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 65671..65673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra411.t1Ggra411.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 64282..65673 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra411.t1 ID=Ggra411.t1|Name=Ggra411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MEAKTGIVFNDVAGIDEAKEEFEEVVTFLKKPERFTAVGAKIPKGVLLIG
PPGTGKTLLAKAIAGEANVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE
NAPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI
VIAATNRADILDSALLRPGRFDRQVSVEIPDFKGRLDILKVHAKNKKMEK
SISLSIIARRTPGFSGADLANLLNEAAILTARRRKKHITLNEIDASIDRI
VAGMEGTALIDSKSKRLIAYHEIGHAIVGTLLKDHDPVQKVTLIPRGQAK
GLTWFTPGEDQNLISRSQIISRIMGALGGRAAEEVVFGDTEVTTGASNDL
QQVTSMARQMVTRFGMSNIGPLCLENEESNPFLGRSMGSGAEYSDEIAIK
IDKQIYHIVEKCYQDTIKIIQDNRIVIDRLVDLLIEKETIDGQEFQEIIN
EYTPIPEKEVYIT*
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spliced messenger RNA

>Ggra411.t1 ID=Ggra411.t1|Name=Ggra411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:64282..65673- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGAAAACAGGTATAGTGTTTAACGATGTGGCAGGAATTGATGA
AGCTAAAGAAGAATTTGAAGAAGTAGTTACATTCTTAAAAAAACCAGAAA
GATTTACGGCTGTAGGAGCTAAAATACCTAAAGGTGTTTTATTAATAGGA
CCTCCTGGGACAGGAAAAACTTTATTAGCTAAGGCAATTGCAGGGGAAGC
TAATGTACCTTTTTTCAGCATTTCAGGATCTGAATTTGTAGAAATGTTTG
TGGGTGTAGGTGCTTCACGTGTCAGAGATTTATTTAAAAAAGCAAAAGAA
AATGCTCCATGTATTGTATTCATAGATGAAATAGATGCTGTTGGTAGACA
AAGAGGAACAGGTATTGGTGGTGGCAACGATGAACGAGAACAAACATTAA
ATCAATTATTAACAGAAATGGATGGCTTTGAAGGAAATACAGGAGTCATA
GTAATTGCAGCAACAAACCGAGCTGATATACTTGATTCTGCCTTATTAAG
GCCTGGCCGTTTCGATCGGCAAGTATCTGTCGAAATACCAGATTTTAAAG
GTAGATTAGATATACTAAAAGTGCATGCAAAAAACAAAAAAATGGAAAAG
AGCATATCGTTATCCATTATAGCTAGGCGAACTCCTGGATTTTCAGGTGC
GGATTTAGCAAATTTACTAAATGAAGCAGCGATCCTAACAGCTAGAAGGA
GAAAAAAACACATCACACTTAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCTGGCATGGAAGGAACTGCACTAATCGATAGTAAAAGCAAACGCTT
AATTGCATATCATGAGATCGGACATGCAATAGTGGGAACACTTCTTAAGG
ATCATGATCCTGTACAAAAAGTAACTTTAATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACTCCAGGAGAGGACCAAAATTTAATATCAAGATC
TCAAATTATATCGCGTATTATGGGAGCTTTAGGTGGTAGAGCTGCAGAAG
AAGTTGTATTTGGAGATACAGAAGTTACAACTGGAGCTAGCAATGATTTA
CAACAAGTAACATCTATGGCCCGTCAAATGGTTACAAGATTTGGTATGTC
CAATATAGGACCATTATGTCTAGAAAATGAAGAATCAAATCCATTTTTAG
GAAGAAGCATGGGTAGTGGAGCAGAATATTCCGATGAAATTGCAATTAAA
ATTGATAAACAAATATATCACATAGTAGAAAAATGCTATCAAGATACAAT
CAAAATTATTCAAGATAACAGAATTGTTATTGATAGATTAGTAGACTTAC
TAATCGAAAAAGAAACGATCGACGGACAAGAATTTCAAGAAATCATCAAT
GAATATACACCTATTCCAGAAAAGGAAGTATATATAACATAG
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protein sequence of Ggra411.t1

>Ggra411.t1 ID=Ggra411.t1|Name=Ggra411.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MEAKTGIVFNDVAGIDEAKEEFEEVVTFLKKPERFTAVGAKIPKGVLLIG
PPGTGKTLLAKAIAGEANVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE
NAPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI
VIAATNRADILDSALLRPGRFDRQVSVEIPDFKGRLDILKVHAKNKKMEK
SISLSIIARRTPGFSGADLANLLNEAAILTARRRKKHITLNEIDASIDRI
VAGMEGTALIDSKSKRLIAYHEIGHAIVGTLLKDHDPVQKVTLIPRGQAK
GLTWFTPGEDQNLISRSQIISRIMGALGGRAAEEVVFGDTEVTTGASNDL
QQVTSMARQMVTRFGMSNIGPLCLENEESNPFLGRSMGSGAEYSDEIAIK
IDKQIYHIVEKCYQDTIKIIQDNRIVIDRLVDLLIEKETIDGQEFQEIIN
EYTPIPEKEVYIT*
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mRNA from alignment at tig00000928_pilon:64282..65673-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra411.t1 ID=Ggra411.t1|Name=Ggra411.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:64282..65673- (Gracilaria gracilis GNS1m male)
ATGGAAGCGAAAACAGGTATAGTGTTTAACGATGTGGCAGGAATTGATGA
AGCTAAAGAAGAATTTGAAGAAGTAGTTACATTCTTAAAAAAACCAGAAA
GATTTACGGCTGTAGGAGCTAAAATACCTAAAGGTGTTTTATTAATAGGA
CCTCCTGGGACAGGAAAAACTTTATTAGCTAAGGCAATTGCAGGGGAAGC
TAATGTACCTTTTTTCAGCATTTCAGGATCTGAATTTGTAGAAATGTTTG
TGGGTGTAGGTGCTTCACGTGTCAGAGATTTATTTAAAAAAGCAAAAGAA
AATGCTCCATGTATTGTATTCATAGATGAAATAGATGCTGTTGGTAGACA
AAGAGGAACAGGTATTGGTGGTGGCAACGATGAACGAGAACAAACATTAA
ATCAATTATTAACAGAAATGGATGGCTTTGAAGGAAATACAGGAGTCATA
GTAATTGCAGCAACAAACCGAGCTGATATACTTGATTCTGCCTTATTAAG
GCCTGGCCGTTTCGATCGGCAAGTATCTGTCGAAATACCAGATTTTAAAG
GTAGATTAGATATACTAAAAGTGCATGCAAAAAACAAAAAAATGGAAAAG
AGCATATCGTTATCCATTATAGCTAGGCGAACTCCTGGATTTTCAGGTGC
GGATTTAGCAAATTTACTAAATGAAGCAGCGATCCTAACAGCTAGAAGGA
GAAAAAAACACATCACACTTAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCTGGCATGGAAGGAACTGCACTAATCGATAGTAAAAGCAAACGCTT
AATTGCATATCATGAGATCGGACATGCAATAGTGGGAACACTTCTTAAGG
ATCATGATCCTGTACAAAAAGTAACTTTAATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACTCCAGGAGAGGACCAAAATTTAATATCAAGATC
TCAAATTATATCGCGTATTATGGGAGCTTTAGGTGGTAGAGCTGCAGAAG
AAGTTGTATTTGGAGATACAGAAGTTACAACTGGAGCTAGCAATGATTTA
CAACAAGTAACATCTATGGCCCGTCAAATGGTTACAAGATTTGGTATGTC
CAATATAGGACCATTATGTCTAGAAAATGAAGAATCAAATCCATTTTTAG
GAAGAAGCATGGGTAGTGGAGCAGAATATTCCGATGAAATTGCAATTAAA
ATTGATAAACAAATATATCACATAGTAGAAAAATGCTATCAAGATACAAT
CAAAATTATTCAAGATAACAGAATTGTTATTGATAGATTAGTAGACTTAC
TAATCGAAAAAGAAACGATCGACGGACAAGAATTTCAAGAAATCATCAAT
GAATATACACCTATTCCAGAAAAGGAAGTATATATAACATAG
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Coding sequence (CDS) from alignment at tig00000928_pilon:64282..65673-

>Ggra411.t1 ID=Ggra411.t1|Name=Ggra411.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000928_pilon:64282..65673- (Gracilaria gracilis GNS1m male)
ATGGAAGCGAAAACAGGTATAGTGTTTAACGATGTGGCAGGAATTGATGA
AGCTAAAGAAGAATTTGAAGAAGTAGTTACATTCTTAAAAAAACCAGAAA
GATTTACGGCTGTAGGAGCTAAAATACCTAAAGGTGTTTTATTAATAGGA
CCTCCTGGGACAGGAAAAACTTTATTAGCTAAGGCAATTGCAGGGGAAGC
TAATGTACCTTTTTTCAGCATTTCAGGATCTGAATTTGTAGAAATGTTTG
TGGGTGTAGGTGCTTCACGTGTCAGAGATTTATTTAAAAAAGCAAAAGAA
AATGCTCCATGTATTGTATTCATAGATGAAATAGATGCTGTTGGTAGACA
AAGAGGAACAGGTATTGGTGGTGGCAACGATGAACGAGAACAAACATTAA
ATCAATTATTAACAGAAATGGATGGCTTTGAAGGAAATACAGGAGTCATA
GTAATTGCAGCAACAAACCGAGCTGATATACTTGATTCTGCCTTATTAAG
GCCTGGCCGTTTCGATCGGCAAGTATCTGTCGAAATACCAGATTTTAAAG
GTAGATTAGATATACTAAAAGTGCATGCAAAAAACAAAAAAATGGAAAAG
AGCATATCGTTATCCATTATAGCTAGGCGAACTCCTGGATTTTCAGGTGC
GGATTTAGCAAATTTACTAAATGAAGCAGCGATCCTAACAGCTAGAAGGA
GAAAAAAACACATCACACTTAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCTGGCATGGAAGGAACTGCACTAATCGATAGTAAAAGCAAACGCTT
AATTGCATATCATGAGATCGGACATGCAATAGTGGGAACACTTCTTAAGG
ATCATGATCCTGTACAAAAAGTAACTTTAATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACTCCAGGAGAGGACCAAAATTTAATATCAAGATC
TCAAATTATATCGCGTATTATGGGAGCTTTAGGTGGTAGAGCTGCAGAAG
AAGTTGTATTTGGAGATACAGAAGTTACAACTGGAGCTAGCAATGATTTA
CAACAAGTAACATCTATGGCCCGTCAAATGGTTACAAGATTTGGTATGTC
CAATATAGGACCATTATGTCTAGAAAATGAAGAATCAAATCCATTTTTAG
GAAGAAGCATGGGTAGTGGAGCAGAATATTCCGATGAAATTGCAATTAAA
ATTGATAAACAAATATATCACATAGTAGAAAAATGCTATCAAGATACAAT
CAAAATTATTCAAGATAACAGAATTGTTATTGATAGATTAGTAGACTTAC
TAATCGAAAAAGAAACGATCGACGGACAAGAATTTCAAGAAATCATCAAT
GAATATACACCTATTCCAGAAAAGGAAGTATATATAACATAG
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