Ggra4102.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4102.t1
Unique NameGgra4102.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:137550..138779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr8926
PFAMsFDX-ACB,Phe_tRNA-synt_N,tRNA-synt_2d
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue1.16e-133
EggNOG OGsCOG0016@1|root,KOG2783@2759|Eukaryota
EC6.1.1.20
Descriptionphenylalanyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4102Ggra4102Gracilaria gracilis GNS1m malegenetig00000853_pilon 137550..138779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4102.t1.stop1Ggra4102.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 137550..137552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4102.t1.CDS1Ggra4102.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 137550..138779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4102.t1.exon1Ggra4102.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 137550..138779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4102.t1.start1Ggra4102.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 138777..138779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4102.t1Ggra4102.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 137550..138779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4102.t1 ID=Ggra4102.t1|Name=Ggra4102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MDPVELAFVGSLAAGARHCINRQNLRCSTFIKQPLRPGAATNRRAFSHVH
TIRACASSVAQSLVESEAKIKKEVGKALQAIGEAKDEKEVEKLRVAYLGK
KGSVTVMLKIIGKLPATDRPKYGAAVNKAKQEVAKAIEERKKFFKENDQE
EEEDWIDVTMPGIRPRNTVGRIHPVNSTMDIALEIFQRLGYEVVDDPELN
REIETDYYCFEALNCPADHPAREMQDTFYLNEEKTLLLRTQTSSVQIRYM
EKNKPPFRIIAPGRVFRRDSVDATHSPIFHQIEILAIEKMGNLTLGHLKG
TIEHFLKKMLGDNIETRFRASYFPFTEPSMEVDVFFRGKWMEVLGCGMVD
PAVLENVGIDPDEWCGFAAGFGVERFAMAMHGITDIREFYKNDLRFLRQG
LIDIDKGIL*
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spliced messenger RNA

>Ggra4102.t1 ID=Ggra4102.t1|Name=Ggra4102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000853_pilon:137550..138779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCGTTGAACTTGCTTTCGTGGGGAGTTTAGCTGCGGGCGCACG
CCACTGTATCAACAGACAGAACTTGAGATGCTCAACTTTCATCAAACAAC
CGCTGCGGCCTGGCGCTGCGACGAATCGAAGAGCTTTTTCGCATGTTCAC
ACAATAAGGGCTTGTGCGTCTTCAGTGGCACAATCATTGGTAGAATCCGA
GGCCAAGATAAAGAAAGAGGTAGGCAAAGCGCTACAAGCTATCGGTGAAG
CCAAAGACGAGAAGGAAGTTGAAAAGCTCAGGGTTGCGTATCTGGGGAAA
AAGGGTTCAGTAACAGTAATGTTAAAGATAATAGGCAAATTGCCAGCGAC
TGATAGACCCAAATACGGAGCAGCTGTGAACAAGGCGAAGCAAGAAGTTG
CAAAGGCTATTGAAGAAAGGAAAAAGTTCTTCAAAGAAAACGACCAGGAA
GAAGAAGAAGACTGGATTGATGTTACTATGCCAGGAATAAGACCACGCAA
TACTGTTGGTAGGATACACCCTGTGAACAGTACGATGGACATTGCTCTCG
AGATTTTCCAGCGTCTCGGATACGAAGTTGTTGATGACCCCGAACTTAAC
CGCGAAATCGAAACAGATTATTACTGCTTTGAGGCTCTCAACTGTCCTGC
CGACCACCCCGCTCGAGAAATGCAGGACACGTTTTACCTAAACGAAGAGA
AGACATTATTGCTGCGAACTCAGACGTCATCTGTGCAGATAAGATACATG
GAGAAGAACAAGCCACCATTTCGTATAATTGCCCCAGGCAGAGTTTTCCG
AAGAGATTCGGTTGATGCCACTCACTCTCCAATTTTCCATCAGATTGAAA
TTCTTGCTATAGAGAAAATGGGGAACTTGACGTTAGGCCACTTGAAGGGA
ACAATTGAGCATTTCTTAAAAAAAATGCTTGGAGACAATATTGAGACTCG
TTTCCGGGCGTCATACTTCCCATTCACAGAACCTAGTATGGAAGTGGACG
TCTTCTTCCGTGGAAAGTGGATGGAAGTGTTGGGATGCGGTATGGTGGAT
CCTGCAGTTCTGGAAAATGTTGGCATAGACCCTGATGAATGGTGTGGCTT
TGCAGCTGGTTTTGGAGTTGAACGGTTCGCAATGGCAATGCATGGAATTA
CGGACATTCGCGAATTCTACAAGAATGATTTGCGATTCCTTCGACAAGGT
CTGATTGACATAGACAAAGGCATTTTGTAA
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protein sequence of Ggra4102.t1

>Ggra4102.t1 ID=Ggra4102.t1|Name=Ggra4102.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MDPVELAFVGSLAAGARHCINRQNLRCSTFIKQPLRPGAATNRRAFSHVH
TIRACASSVAQSLVESEAKIKKEVGKALQAIGEAKDEKEVEKLRVAYLGK
KGSVTVMLKIIGKLPATDRPKYGAAVNKAKQEVAKAIEERKKFFKENDQE
EEEDWIDVTMPGIRPRNTVGRIHPVNSTMDIALEIFQRLGYEVVDDPELN
REIETDYYCFEALNCPADHPAREMQDTFYLNEEKTLLLRTQTSSVQIRYM
EKNKPPFRIIAPGRVFRRDSVDATHSPIFHQIEILAIEKMGNLTLGHLKG
TIEHFLKKMLGDNIETRFRASYFPFTEPSMEVDVFFRGKWMEVLGCGMVD
PAVLENVGIDPDEWCGFAAGFGVERFAMAMHGITDIREFYKNDLRFLRQG
LIDIDKGIL*
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mRNA from alignment at tig00000853_pilon:137550..138779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4102.t1 ID=Ggra4102.t1|Name=Ggra4102.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000853_pilon:137550..138779- (Gracilaria gracilis GNS1m male)
ATGGACCCCGTTGAACTTGCTTTCGTGGGGAGTTTAGCTGCGGGCGCACG
CCACTGTATCAACAGACAGAACTTGAGATGCTCAACTTTCATCAAACAAC
CGCTGCGGCCTGGCGCTGCGACGAATCGAAGAGCTTTTTCGCATGTTCAC
ACAATAAGGGCTTGTGCGTCTTCAGTGGCACAATCATTGGTAGAATCCGA
GGCCAAGATAAAGAAAGAGGTAGGCAAAGCGCTACAAGCTATCGGTGAAG
CCAAAGACGAGAAGGAAGTTGAAAAGCTCAGGGTTGCGTATCTGGGGAAA
AAGGGTTCAGTAACAGTAATGTTAAAGATAATAGGCAAATTGCCAGCGAC
TGATAGACCCAAATACGGAGCAGCTGTGAACAAGGCGAAGCAAGAAGTTG
CAAAGGCTATTGAAGAAAGGAAAAAGTTCTTCAAAGAAAACGACCAGGAA
GAAGAAGAAGACTGGATTGATGTTACTATGCCAGGAATAAGACCACGCAA
TACTGTTGGTAGGATACACCCTGTGAACAGTACGATGGACATTGCTCTCG
AGATTTTCCAGCGTCTCGGATACGAAGTTGTTGATGACCCCGAACTTAAC
CGCGAAATCGAAACAGATTATTACTGCTTTGAGGCTCTCAACTGTCCTGC
CGACCACCCCGCTCGAGAAATGCAGGACACGTTTTACCTAAACGAAGAGA
AGACATTATTGCTGCGAACTCAGACGTCATCTGTGCAGATAAGATACATG
GAGAAGAACAAGCCACCATTTCGTATAATTGCCCCAGGCAGAGTTTTCCG
AAGAGATTCGGTTGATGCCACTCACTCTCCAATTTTCCATCAGATTGAAA
TTCTTGCTATAGAGAAAATGGGGAACTTGACGTTAGGCCACTTGAAGGGA
ACAATTGAGCATTTCTTAAAAAAAATGCTTGGAGACAATATTGAGACTCG
TTTCCGGGCGTCATACTTCCCATTCACAGAACCTAGTATGGAAGTGGACG
TCTTCTTCCGTGGAAAGTGGATGGAAGTGTTGGGATGCGGTATGGTGGAT
CCTGCAGTTCTGGAAAATGTTGGCATAGACCCTGATGAATGGTGTGGCTT
TGCAGCTGGTTTTGGAGTTGAACGGTTCGCAATGGCAATGCATGGAATTA
CGGACATTCGCGAATTCTACAAGAATGATTTGCGATTCCTTCGACAAGGT
CTGATTGACATAGACAAAGGCATTTTGTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:137550..138779-

>Ggra4102.t1 ID=Ggra4102.t1|Name=Ggra4102.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000853_pilon:137550..138779- (Gracilaria gracilis GNS1m male)
ATGGACCCCGTTGAACTTGCTTTCGTGGGGAGTTTAGCTGCGGGCGCACG
CCACTGTATCAACAGACAGAACTTGAGATGCTCAACTTTCATCAAACAAC
CGCTGCGGCCTGGCGCTGCGACGAATCGAAGAGCTTTTTCGCATGTTCAC
ACAATAAGGGCTTGTGCGTCTTCAGTGGCACAATCATTGGTAGAATCCGA
GGCCAAGATAAAGAAAGAGGTAGGCAAAGCGCTACAAGCTATCGGTGAAG
CCAAAGACGAGAAGGAAGTTGAAAAGCTCAGGGTTGCGTATCTGGGGAAA
AAGGGTTCAGTAACAGTAATGTTAAAGATAATAGGCAAATTGCCAGCGAC
TGATAGACCCAAATACGGAGCAGCTGTGAACAAGGCGAAGCAAGAAGTTG
CAAAGGCTATTGAAGAAAGGAAAAAGTTCTTCAAAGAAAACGACCAGGAA
GAAGAAGAAGACTGGATTGATGTTACTATGCCAGGAATAAGACCACGCAA
TACTGTTGGTAGGATACACCCTGTGAACAGTACGATGGACATTGCTCTCG
AGATTTTCCAGCGTCTCGGATACGAAGTTGTTGATGACCCCGAACTTAAC
CGCGAAATCGAAACAGATTATTACTGCTTTGAGGCTCTCAACTGTCCTGC
CGACCACCCCGCTCGAGAAATGCAGGACACGTTTTACCTAAACGAAGAGA
AGACATTATTGCTGCGAACTCAGACGTCATCTGTGCAGATAAGATACATG
GAGAAGAACAAGCCACCATTTCGTATAATTGCCCCAGGCAGAGTTTTCCG
AAGAGATTCGGTTGATGCCACTCACTCTCCAATTTTCCATCAGATTGAAA
TTCTTGCTATAGAGAAAATGGGGAACTTGACGTTAGGCCACTTGAAGGGA
ACAATTGAGCATTTCTTAAAAAAAATGCTTGGAGACAATATTGAGACTCG
TTTCCGGGCGTCATACTTCCCATTCACAGAACCTAGTATGGAAGTGGACG
TCTTCTTCCGTGGAAAGTGGATGGAAGTGTTGGGATGCGGTATGGTGGAT
CCTGCAGTTCTGGAAAATGTTGGCATAGACCCTGATGAATGGTGTGGCTT
TGCAGCTGGTTTTGGAGTTGAACGGTTCGCAATGGCAATGCATGGAATTA
CGGACATTCGCGAATTCTACAAGAATGATTTGCGATTCCTTCGACAAGGT
CTGATTGACATAGACAAAGGCATTTTGTAA
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