Ggra4101.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4101.t1
Unique NameGgra4101.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:135103..136392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41431.PCC8801_3422
Preferred nameprfB
PFAMsPCRF,RF-1
Max annot lvl1117|Cyanobacteria
KEGG koko:K02836
Evalue7.15e-139
EggNOG OGsCOG1186@1|root,COG1186@2|Bacteria,1G1QH@1117|Cyanobacteria,3KG2R@43988|Cyanothece
DescriptionPeptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4101Ggra4101Gracilaria gracilis GNS1m malegenetig00000853_pilon 135103..136392 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4101.t1.stop1Ggra4101.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 135103..135105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4101.t1.CDS1Ggra4101.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 135103..136392 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4101.t1.exon1Ggra4101.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 135103..136392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4101.t1.start1Ggra4101.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 136390..136392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4101.t1Ggra4101.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 135103..136392 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4101.t1 ID=Ggra4101.t1|Name=Ggra4101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MAPLITFVSLPFQPSFRNAPRRASINSKRPRNFRSEPFPKVTCSAKPPTE
RASNLHRKLQDLKSRVEANTATEDLDRHVAAVKQLQAESSEPHFWDNSSA
AQQSLRQLALHESVIERLKKWGTQADDAGAFLELAREAEAEETDLAMLEE
AESIIASLNTDVDKFETQQLLDGPYDTYGAILTITAGAGGTDAQDWAEML
LRMYTRWAVECQYKVSILDMSEGDEAGLKSVTVEIDGDYACGYLSGEKGT
HRLVRISPFNAQGKRQTSFAGVEVMPVLKEEDANKVEVAESDVEVTTMRA
GGKGGQNVNKVETAVRMTHIPTGISVRCAEQRSQAQNKIKAMEILKAKLA
VVAEEQRVKELADIRGDAVDAAWGMQIRNYVLHPYKVVKDLRTEHEEGDT
GAVLDGKLDEFIASWLRWRKANANEGSNG*
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spliced messenger RNA

>Ggra4101.t1 ID=Ggra4101.t1|Name=Ggra4101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000853_pilon:135103..136392- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCTCTGATAACTTTCGTTTCTCTGCCCTTCCAACCGTCTTTTCG
CAATGCGCCTCGAAGGGCGTCCATAAATTCAAAGCGGCCACGAAACTTTC
GCTCAGAGCCGTTTCCAAAAGTGACATGCTCCGCCAAACCTCCCACAGAA
AGAGCGAGTAACCTTCACCGGAAGCTCCAGGATCTGAAAAGTCGTGTTGA
GGCGAACACAGCCACAGAGGACCTTGATCGCCATGTCGCAGCCGTAAAGC
AACTGCAAGCTGAGTCTTCAGAACCTCACTTTTGGGACAACTCCAGCGCC
GCACAACAATCGCTTCGACAACTAGCCCTCCATGAGTCGGTCATCGAACG
CCTCAAGAAATGGGGCACCCAAGCTGACGACGCTGGTGCATTTCTCGAAC
TTGCAAGGGAAGCGGAAGCAGAAGAGACAGACTTGGCCATGCTGGAAGAA
GCGGAGAGCATTATCGCAAGCTTGAACACAGATGTCGATAAGTTCGAGAC
GCAACAGTTGCTCGACGGTCCGTACGATACATACGGCGCGATTTTGACGA
TAACGGCCGGTGCGGGTGGAACAGATGCTCAAGATTGGGCTGAAATGCTG
CTCCGAATGTACACGAGATGGGCCGTCGAGTGCCAATACAAGGTTAGCAT
TCTCGACATGAGTGAAGGCGACGAAGCAGGGCTCAAGTCCGTTACTGTCG
AAATTGACGGTGATTATGCGTGCGGGTATCTTAGCGGCGAGAAGGGTACG
CATCGACTGGTGCGCATCAGTCCATTCAACGCACAAGGGAAGCGGCAGAC
AAGCTTTGCTGGTGTGGAAGTGATGCCCGTGCTCAAAGAGGAAGATGCCA
ACAAGGTTGAAGTGGCAGAATCCGACGTTGAAGTGACGACGATGAGAGCG
GGCGGTAAAGGCGGGCAGAACGTGAACAAGGTGGAAACGGCTGTACGCAT
GACACACATTCCGACAGGCATAAGCGTGCGATGCGCCGAGCAACGGAGCC
AGGCGCAGAACAAGATAAAGGCGATGGAGATACTCAAGGCGAAGCTGGCG
GTGGTCGCGGAGGAACAGCGAGTGAAGGAACTGGCCGACATTCGCGGAGA
TGCGGTGGACGCGGCATGGGGGATGCAGATCCGCAACTACGTTTTGCACC
CGTACAAAGTGGTGAAGGATCTACGCACGGAGCATGAGGAAGGGGACACG
GGGGCGGTATTGGACGGAAAGCTTGACGAATTTATTGCAAGTTGGCTGCG
ATGGCGGAAGGCAAACGCAAACGAAGGCAGCAATGGGTGA
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protein sequence of Ggra4101.t1

>Ggra4101.t1 ID=Ggra4101.t1|Name=Ggra4101.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MAPLITFVSLPFQPSFRNAPRRASINSKRPRNFRSEPFPKVTCSAKPPTE
RASNLHRKLQDLKSRVEANTATEDLDRHVAAVKQLQAESSEPHFWDNSSA
AQQSLRQLALHESVIERLKKWGTQADDAGAFLELAREAEAEETDLAMLEE
AESIIASLNTDVDKFETQQLLDGPYDTYGAILTITAGAGGTDAQDWAEML
LRMYTRWAVECQYKVSILDMSEGDEAGLKSVTVEIDGDYACGYLSGEKGT
HRLVRISPFNAQGKRQTSFAGVEVMPVLKEEDANKVEVAESDVEVTTMRA
GGKGGQNVNKVETAVRMTHIPTGISVRCAEQRSQAQNKIKAMEILKAKLA
VVAEEQRVKELADIRGDAVDAAWGMQIRNYVLHPYKVVKDLRTEHEEGDT
GAVLDGKLDEFIASWLRWRKANANEGSNG*
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mRNA from alignment at tig00000853_pilon:135103..136392-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4101.t1 ID=Ggra4101.t1|Name=Ggra4101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000853_pilon:135103..136392- (Gracilaria gracilis GNS1m male)
ATGGCACCTCTGATAACTTTCGTTTCTCTGCCCTTCCAACCGTCTTTTCG
CAATGCGCCTCGAAGGGCGTCCATAAATTCAAAGCGGCCACGAAACTTTC
GCTCAGAGCCGTTTCCAAAAGTGACATGCTCCGCCAAACCTCCCACAGAA
AGAGCGAGTAACCTTCACCGGAAGCTCCAGGATCTGAAAAGTCGTGTTGA
GGCGAACACAGCCACAGAGGACCTTGATCGCCATGTCGCAGCCGTAAAGC
AACTGCAAGCTGAGTCTTCAGAACCTCACTTTTGGGACAACTCCAGCGCC
GCACAACAATCGCTTCGACAACTAGCCCTCCATGAGTCGGTCATCGAACG
CCTCAAGAAATGGGGCACCCAAGCTGACGACGCTGGTGCATTTCTCGAAC
TTGCAAGGGAAGCGGAAGCAGAAGAGACAGACTTGGCCATGCTGGAAGAA
GCGGAGAGCATTATCGCAAGCTTGAACACAGATGTCGATAAGTTCGAGAC
GCAACAGTTGCTCGACGGTCCGTACGATACATACGGCGCGATTTTGACGA
TAACGGCCGGTGCGGGTGGAACAGATGCTCAAGATTGGGCTGAAATGCTG
CTCCGAATGTACACGAGATGGGCCGTCGAGTGCCAATACAAGGTTAGCAT
TCTCGACATGAGTGAAGGCGACGAAGCAGGGCTCAAGTCCGTTACTGTCG
AAATTGACGGTGATTATGCGTGCGGGTATCTTAGCGGCGAGAAGGGTACG
CATCGACTGGTGCGCATCAGTCCATTCAACGCACAAGGGAAGCGGCAGAC
AAGCTTTGCTGGTGTGGAAGTGATGCCCGTGCTCAAAGAGGAAGATGCCA
ACAAGGTTGAAGTGGCAGAATCCGACGTTGAAGTGACGACGATGAGAGCG
GGCGGTAAAGGCGGGCAGAACGTGAACAAGGTGGAAACGGCTGTACGCAT
GACACACATTCCGACAGGCATAAGCGTGCGATGCGCCGAGCAACGGAGCC
AGGCGCAGAACAAGATAAAGGCGATGGAGATACTCAAGGCGAAGCTGGCG
GTGGTCGCGGAGGAACAGCGAGTGAAGGAACTGGCCGACATTCGCGGAGA
TGCGGTGGACGCGGCATGGGGGATGCAGATCCGCAACTACGTTTTGCACC
CGTACAAAGTGGTGAAGGATCTACGCACGGAGCATGAGGAAGGGGACACG
GGGGCGGTATTGGACGGAAAGCTTGACGAATTTATTGCAAGTTGGCTGCG
ATGGCGGAAGGCAAACGCAAACGAAGGCAGCAATGGGTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:135103..136392-

>Ggra4101.t1 ID=Ggra4101.t1|Name=Ggra4101.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000853_pilon:135103..136392- (Gracilaria gracilis GNS1m male)
ATGGCACCTCTGATAACTTTCGTTTCTCTGCCCTTCCAACCGTCTTTTCG
CAATGCGCCTCGAAGGGCGTCCATAAATTCAAAGCGGCCACGAAACTTTC
GCTCAGAGCCGTTTCCAAAAGTGACATGCTCCGCCAAACCTCCCACAGAA
AGAGCGAGTAACCTTCACCGGAAGCTCCAGGATCTGAAAAGTCGTGTTGA
GGCGAACACAGCCACAGAGGACCTTGATCGCCATGTCGCAGCCGTAAAGC
AACTGCAAGCTGAGTCTTCAGAACCTCACTTTTGGGACAACTCCAGCGCC
GCACAACAATCGCTTCGACAACTAGCCCTCCATGAGTCGGTCATCGAACG
CCTCAAGAAATGGGGCACCCAAGCTGACGACGCTGGTGCATTTCTCGAAC
TTGCAAGGGAAGCGGAAGCAGAAGAGACAGACTTGGCCATGCTGGAAGAA
GCGGAGAGCATTATCGCAAGCTTGAACACAGATGTCGATAAGTTCGAGAC
GCAACAGTTGCTCGACGGTCCGTACGATACATACGGCGCGATTTTGACGA
TAACGGCCGGTGCGGGTGGAACAGATGCTCAAGATTGGGCTGAAATGCTG
CTCCGAATGTACACGAGATGGGCCGTCGAGTGCCAATACAAGGTTAGCAT
TCTCGACATGAGTGAAGGCGACGAAGCAGGGCTCAAGTCCGTTACTGTCG
AAATTGACGGTGATTATGCGTGCGGGTATCTTAGCGGCGAGAAGGGTACG
CATCGACTGGTGCGCATCAGTCCATTCAACGCACAAGGGAAGCGGCAGAC
AAGCTTTGCTGGTGTGGAAGTGATGCCCGTGCTCAAAGAGGAAGATGCCA
ACAAGGTTGAAGTGGCAGAATCCGACGTTGAAGTGACGACGATGAGAGCG
GGCGGTAAAGGCGGGCAGAACGTGAACAAGGTGGAAACGGCTGTACGCAT
GACACACATTCCGACAGGCATAAGCGTGCGATGCGCCGAGCAACGGAGCC
AGGCGCAGAACAAGATAAAGGCGATGGAGATACTCAAGGCGAAGCTGGCG
GTGGTCGCGGAGGAACAGCGAGTGAAGGAACTGGCCGACATTCGCGGAGA
TGCGGTGGACGCGGCATGGGGGATGCAGATCCGCAACTACGTTTTGCACC
CGTACAAAGTGGTGAAGGATCTACGCACGGAGCATGAGGAAGGGGACACG
GGGGCGGTATTGGACGGAAAGCTTGACGAATTTATTGCAAGTTGGCTGCG
ATGGCGGAAGGCAAACGCAAACGAAGGCAGCAATGGGTGA
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