Ggra4099.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4099.t1
Unique NameGgra4099.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:131696..133230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703106.1
Preferred nameUGDH1
PFAMsUDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00291
KEGG koko:K00012
KEGG ReactionR00286
KEGG Pathwayko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG ModuleM00014,M00129,M00361,M00362
Evalue9.31e-236
EggNOG OGsCOG1004@1|root,KOG2666@2759|Eukaryota
EC1.1.1.22
DescriptionUDP-glucose 6-dehydrogenase activity
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4099Ggra4099Gracilaria gracilis GNS1m malegenetig00000853_pilon 131696..133230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1Ggra4099.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 131696..133230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1.stop1Ggra4099.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 131696..131698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1.CDS1Ggra4099.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 131696..133051 -
Ggra4099.t1.CDS2Ggra4099.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 133162..133230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1.exon1Ggra4099.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 131696..133051 -
Ggra4099.t1.exon2Ggra4099.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 133162..133230 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1.intron1Ggra4099.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 133052..133161 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4099.t1.start1Ggra4099.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 133228..133230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4099.t1 ID=Ggra4099.t1|Name=Ggra4099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MVSIPSQDGLKICCVGAGYVGGPTMSMIALKCPEVQVKIVDISTPRINAW
NSDDLPIYEPGLPKVVAACRGKNLFFSTDIDEAIQEADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVAETPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAITDLDNPDRVLIGGQLDESGQKAMQVLAD
VYAHWVPRDRILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDRRIGPKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SASIDVCRRLIEEKAQVAIYDPKVDEEQMWMDLTYACKMDKTEVQKYVTV
CRDALSACKDAHAMAVATEWDEFKDLDYTQVYDTMVKPSFVFDGRNILDH
AALREIGFVVFAIGKPLDPKLSTA*
back to top

spliced messenger RNA

>Ggra4099.t1 ID=Ggra4099.t1|Name=Ggra4099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000853_pilon:131696..133230- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCTATTCCCTCCCAGGATGGGCTCAAAATCTGCTGCGTTGGCGC
CGGTTACGTCGGTGGACCGACCATGTCCATGATCGCTCTCAAGTGCCCGG
AGGTCCAGGTCAAGATTGTGGATATTTCCACCCCTCGCATCAACGCCTGG
AACAGCGATGACCTGCCCATCTACGAGCCGGGGCTTCCCAAGGTCGTCGC
CGCATGCCGCGGCAAGAACCTCTTCTTCAGCACCGATATCGATGAGGCCA
TTCAGGAGGCTGATATCATTTTTGTCGCCGTCAATACGCCCACCAAGAAG
GTTGGTATTGGCGCCGGTCGCGCCTCGGACCTTACATACTGGGAGCTGGC
CGCTCGCCGCATTGCTCAGGTTGCTGAAACTCCCAAGATTGTAGTTGAGA
AGAGCACGGTGCCTATCAAGACCGCTGAGGCCATCTCTGCTGTGTTGCAC
GGTGCCGGAAAGACACGCTTCGACGTGCTCAGCAACCCGGAGTTTTTGGC
GGAGGGAACGGCCATCACCGATCTGGATAACCCGGACCGTGTTTTGATTG
GAGGCCAATTGGACGAGAGTGGGCAAAAGGCGATGCAGGTGCTGGCTGAT
GTGTACGCGCACTGGGTGCCGCGTGATCGCATTCTGCTGACCAACGTGTG
GTCATCTGAGCTTTCCAAGCTGGTGGCCAACTCGTTCCTTGCTCAGAGAG
TGTCGTCCATCAACGCCATCTCTGCGGTGTGCGAGGCATCTGGGGCAGAT
GTGGACGAAGTGGCGCGTGCGGTGGGAATGGACAGGCGTATCGGCCCCAA
GTTCCTCAAGGCGTCTGTTGGATTTGGAGGCTCTTGCTTCCAGAAGGACA
TTTTGAACCTGGTGTATCTGTGCGAATCGTTTGGGCTGCCGGAGGTGGCG
CACTACTTTCACCAGGTTGTTCACATGAATGACTACCAGAAGGAGCGATT
TGTGCGACGCATCATTCATGGACTGTATAATACTGTGACGGGCAAGAAGA
TTGCTCTGCTTGGGTTCGCGTTCAAGAAGGACACGGGCGACACGCGAGAG
TCGGCGTCGATCGACGTGTGCCGGCGGCTGATCGAGGAGAAGGCGCAGGT
GGCGATCTACGACCCCAAGGTGGACGAGGAGCAGATGTGGATGGATCTGA
CGTACGCGTGCAAGATGGACAAGACGGAGGTGCAGAAGTACGTGACGGTG
TGCCGCGACGCCCTGTCGGCGTGCAAGGATGCGCATGCGATGGCGGTGGC
GACGGAGTGGGACGAGTTCAAGGACTTGGACTACACGCAGGTGTACGACA
CGATGGTGAAGCCGTCGTTTGTGTTTGACGGGCGTAACATTCTGGACCAC
GCGGCGCTGCGCGAGATTGGGTTCGTGGTGTTCGCCATCGGAAAGCCGCT
GGACCCCAAGTTGAGCACGGCTTGA
back to top

protein sequence of Ggra4099.t1

>Ggra4099.t1 ID=Ggra4099.t1|Name=Ggra4099.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MVSIPSQDGLKICCVGAGYVGGPTMSMIALKCPEVQVKIVDISTPRINAW
NSDDLPIYEPGLPKVVAACRGKNLFFSTDIDEAIQEADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVAETPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAITDLDNPDRVLIGGQLDESGQKAMQVLAD
VYAHWVPRDRILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDRRIGPKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SASIDVCRRLIEEKAQVAIYDPKVDEEQMWMDLTYACKMDKTEVQKYVTV
CRDALSACKDAHAMAVATEWDEFKDLDYTQVYDTMVKPSFVFDGRNILDH
AALREIGFVVFAIGKPLDPKLSTA*
back to top

mRNA from alignment at tig00000853_pilon:131696..133230-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4099.t1 ID=Ggra4099.t1|Name=Ggra4099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1535bp|location=Sequence derived from alignment at tig00000853_pilon:131696..133230- (Gracilaria gracilis GNS1m male)
ATGGTTTCTATTCCCTCCCAGGATGGGCTCAAAATCTGCTGCGTTGGCGC
CGGTTACGTCGGTGGACCGGTAAGTGCGCCTCATCTCTTATTTTGCTTGC
TTGCCCTCTGAAACTTGGTTCTCCGTCTCGAATCTAACACGTGCCTGTAT
CCAAATATGCTCCACACTCCAACACGTAGACCATGTCCATGATCGCTCTC
AAGTGCCCGGAGGTCCAGGTCAAGATTGTGGATATTTCCACCCCTCGCAT
CAACGCCTGGAACAGCGATGACCTGCCCATCTACGAGCCGGGGCTTCCCA
AGGTCGTCGCCGCATGCCGCGGCAAGAACCTCTTCTTCAGCACCGATATC
GATGAGGCCATTCAGGAGGCTGATATCATTTTTGTCGCCGTCAATACGCC
CACCAAGAAGGTTGGTATTGGCGCCGGTCGCGCCTCGGACCTTACATACT
GGGAGCTGGCCGCTCGCCGCATTGCTCAGGTTGCTGAAACTCCCAAGATT
GTAGTTGAGAAGAGCACGGTGCCTATCAAGACCGCTGAGGCCATCTCTGC
TGTGTTGCACGGTGCCGGAAAGACACGCTTCGACGTGCTCAGCAACCCGG
AGTTTTTGGCGGAGGGAACGGCCATCACCGATCTGGATAACCCGGACCGT
GTTTTGATTGGAGGCCAATTGGACGAGAGTGGGCAAAAGGCGATGCAGGT
GCTGGCTGATGTGTACGCGCACTGGGTGCCGCGTGATCGCATTCTGCTGA
CCAACGTGTGGTCATCTGAGCTTTCCAAGCTGGTGGCCAACTCGTTCCTT
GCTCAGAGAGTGTCGTCCATCAACGCCATCTCTGCGGTGTGCGAGGCATC
TGGGGCAGATGTGGACGAAGTGGCGCGTGCGGTGGGAATGGACAGGCGTA
TCGGCCCCAAGTTCCTCAAGGCGTCTGTTGGATTTGGAGGCTCTTGCTTC
CAGAAGGACATTTTGAACCTGGTGTATCTGTGCGAATCGTTTGGGCTGCC
GGAGGTGGCGCACTACTTTCACCAGGTTGTTCACATGAATGACTACCAGA
AGGAGCGATTTGTGCGACGCATCATTCATGGACTGTATAATACTGTGACG
GGCAAGAAGATTGCTCTGCTTGGGTTCGCGTTCAAGAAGGACACGGGCGA
CACGCGAGAGTCGGCGTCGATCGACGTGTGCCGGCGGCTGATCGAGGAGA
AGGCGCAGGTGGCGATCTACGACCCCAAGGTGGACGAGGAGCAGATGTGG
ATGGATCTGACGTACGCGTGCAAGATGGACAAGACGGAGGTGCAGAAGTA
CGTGACGGTGTGCCGCGACGCCCTGTCGGCGTGCAAGGATGCGCATGCGA
TGGCGGTGGCGACGGAGTGGGACGAGTTCAAGGACTTGGACTACACGCAG
GTGTACGACACGATGGTGAAGCCGTCGTTTGTGTTTGACGGGCGTAACAT
TCTGGACCACGCGGCGCTGCGCGAGATTGGGTTCGTGGTGTTCGCCATCG
GAAAGCCGCTGGACCCCAAGTTGAGCACGGCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000853_pilon:131696..133230-

>Ggra4099.t1 ID=Ggra4099.t1|Name=Ggra4099.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000853_pilon:131696..133230- (Gracilaria gracilis GNS1m male)
ATGGTTTCTATTCCCTCCCAGGATGGGCTCAAAATCTGCTGCGTTGGCGC
CGGTTACGTCGGTGGACCGACCATGTCCATGATCGCTCTCAAGTGCCCGG
AGGTCCAGGTCAAGATTGTGGATATTTCCACCCCTCGCATCAACGCCTGG
AACAGCGATGACCTGCCCATCTACGAGCCGGGGCTTCCCAAGGTCGTCGC
CGCATGCCGCGGCAAGAACCTCTTCTTCAGCACCGATATCGATGAGGCCA
TTCAGGAGGCTGATATCATTTTTGTCGCCGTCAATACGCCCACCAAGAAG
GTTGGTATTGGCGCCGGTCGCGCCTCGGACCTTACATACTGGGAGCTGGC
CGCTCGCCGCATTGCTCAGGTTGCTGAAACTCCCAAGATTGTAGTTGAGA
AGAGCACGGTGCCTATCAAGACCGCTGAGGCCATCTCTGCTGTGTTGCAC
GGTGCCGGAAAGACACGCTTCGACGTGCTCAGCAACCCGGAGTTTTTGGC
GGAGGGAACGGCCATCACCGATCTGGATAACCCGGACCGTGTTTTGATTG
GAGGCCAATTGGACGAGAGTGGGCAAAAGGCGATGCAGGTGCTGGCTGAT
GTGTACGCGCACTGGGTGCCGCGTGATCGCATTCTGCTGACCAACGTGTG
GTCATCTGAGCTTTCCAAGCTGGTGGCCAACTCGTTCCTTGCTCAGAGAG
TGTCGTCCATCAACGCCATCTCTGCGGTGTGCGAGGCATCTGGGGCAGAT
GTGGACGAAGTGGCGCGTGCGGTGGGAATGGACAGGCGTATCGGCCCCAA
GTTCCTCAAGGCGTCTGTTGGATTTGGAGGCTCTTGCTTCCAGAAGGACA
TTTTGAACCTGGTGTATCTGTGCGAATCGTTTGGGCTGCCGGAGGTGGCG
CACTACTTTCACCAGGTTGTTCACATGAATGACTACCAGAAGGAGCGATT
TGTGCGACGCATCATTCATGGACTGTATAATACTGTGACGGGCAAGAAGA
TTGCTCTGCTTGGGTTCGCGTTCAAGAAGGACACGGGCGACACGCGAGAG
TCGGCGTCGATCGACGTGTGCCGGCGGCTGATCGAGGAGAAGGCGCAGGT
GGCGATCTACGACCCCAAGGTGGACGAGGAGCAGATGTGGATGGATCTGA
CGTACGCGTGCAAGATGGACAAGACGGAGGTGCAGAAGTACGTGACGGTG
TGCCGCGACGCCCTGTCGGCGTGCAAGGATGCGCATGCGATGGCGGTGGC
GACGGAGTGGGACGAGTTCAAGGACTTGGACTACACGCAGGTGTACGACA
CGATGGTGAAGCCGTCGTTTGTGTTTGACGGGCGTAACATTCTGGACCAC
GCGGCGCTGCGCGAGATTGGGTTCGTGGTGTTCGCCATCGGAAAGCCGCT
GGACCCCAAGTTGAGCACGGCTTGA
back to top