Ggra4096.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4096.t1
Unique NameGgra4096.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:113742..114563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10141.ENSCPOP00000002235
Preferred nameTATDN3
PFAMsTatD_DNase
Max annot lvl33208|Metazoa
KEGG koko:K03424
Evalue1.6e-47
EggNOG OGsCOG0084@1|root,KOG3020@2759|Eukaryota,38GNW@33154|Opisthokonta,3BDHE@33208|Metazoa,3CZ5B@33213|Bilateria,4809E@7711|Chordata,48UZV@7742|Vertebrata,3JDDR@40674|Mammalia,35HDY@314146|Euarchontoglires,4PWHX@9989|Rodentia
DescriptionTatD related DNase
COG categoryL
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4096Ggra4096Gracilaria gracilis GNS1m malegenetig00000853_pilon 113742..114563 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4096.t1.start1Ggra4096.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 113742..113744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4096.t1.CDS1Ggra4096.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 113742..114563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4096.t1.exon1Ggra4096.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 113742..114563 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4096.t1.stop1Ggra4096.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 114561..114563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4096.t1Ggra4096.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 113742..114563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4096.t1 ID=Ggra4096.t1|Name=Ggra4096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MMIDTHAHMTDSQFSLDLDDVIHRAQRAGVAHIVCVSESLCDAKQVLQLS
KQHATIVHAALGLHPEHVTTLSDAQASSELQAITELLPQAAVVAIGEVGL
DFSPRVLAQAADAEQAKRRQRSTFDSFLQLGQQSGLPLSVHSRSAGHHAL
TQICEANAQAPLTAIMHAFDGRAIHAVNALKRMAERLYFSIPPSIARSNS
KVKLVRQVALERLLLESDAPALAAVAQQRNEPAEMVKTVQLIAGIKAQRA
DIVRQQLWYNSVQLFPSFGASTS*
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spliced messenger RNA

>Ggra4096.t1 ID=Ggra4096.t1|Name=Ggra4096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000853_pilon:113742..114563+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATCGATACTCACGCACATATGACCGATTCTCAGTTCTCGTTAGA
TCTAGACGACGTGATCCATCGAGCTCAACGCGCGGGAGTTGCGCACATTG
TGTGCGTGTCAGAATCGCTATGCGATGCGAAACAAGTGCTTCAACTGAGC
AAACAGCACGCCACCATTGTGCACGCCGCGCTGGGGCTGCACCCAGAGCA
CGTGACAACGTTATCCGACGCGCAAGCGTCAAGCGAACTACAGGCAATCA
CAGAGCTGCTACCGCAAGCGGCCGTGGTGGCGATCGGCGAGGTAGGGCTG
GACTTCTCGCCAAGAGTGCTAGCGCAGGCCGCGGACGCCGAGCAAGCAAA
GCGGCGACAACGCAGCACGTTTGATAGCTTCCTGCAGCTGGGTCAACAGA
GCGGGTTGCCACTCAGCGTGCACAGTCGCAGCGCCGGGCACCACGCGCTG
ACTCAAATCTGCGAAGCGAACGCGCAAGCGCCGCTGACGGCCATCATGCA
CGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCGGATGG
CGGAGCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGCTCGAATTCG
AAGGTGAAGCTCGTGCGGCAGGTGGCGCTGGAACGGTTGCTGCTGGAGAG
CGACGCGCCCGCGCTTGCTGCGGTCGCGCAGCAACGGAACGAGCCCGCGG
AAATGGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGCGCAACGCGCT
GACATCGTTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTTCCGTC
ATTCGGCGCAAGCACGTCATGA
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protein sequence of Ggra4096.t1

>Ggra4096.t1 ID=Ggra4096.t1|Name=Ggra4096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MMIDTHAHMTDSQFSLDLDDVIHRAQRAGVAHIVCVSESLCDAKQVLQLS
KQHATIVHAALGLHPEHVTTLSDAQASSELQAITELLPQAAVVAIGEVGL
DFSPRVLAQAADAEQAKRRQRSTFDSFLQLGQQSGLPLSVHSRSAGHHAL
TQICEANAQAPLTAIMHAFDGRAIHAVNALKRMAERLYFSIPPSIARSNS
KVKLVRQVALERLLLESDAPALAAVAQQRNEPAEMVKTVQLIAGIKAQRA
DIVRQQLWYNSVQLFPSFGASTS*
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mRNA from alignment at tig00000853_pilon:113742..114563+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4096.t1 ID=Ggra4096.t1|Name=Ggra4096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000853_pilon:113742..114563+ (Gracilaria gracilis GNS1m male)
ATGATGATCGATACTCACGCACATATGACCGATTCTCAGTTCTCGTTAGA
TCTAGACGACGTGATCCATCGAGCTCAACGCGCGGGAGTTGCGCACATTG
TGTGCGTGTCAGAATCGCTATGCGATGCGAAACAAGTGCTTCAACTGAGC
AAACAGCACGCCACCATTGTGCACGCCGCGCTGGGGCTGCACCCAGAGCA
CGTGACAACGTTATCCGACGCGCAAGCGTCAAGCGAACTACAGGCAATCA
CAGAGCTGCTACCGCAAGCGGCCGTGGTGGCGATCGGCGAGGTAGGGCTG
GACTTCTCGCCAAGAGTGCTAGCGCAGGCCGCGGACGCCGAGCAAGCAAA
GCGGCGACAACGCAGCACGTTTGATAGCTTCCTGCAGCTGGGTCAACAGA
GCGGGTTGCCACTCAGCGTGCACAGTCGCAGCGCCGGGCACCACGCGCTG
ACTCAAATCTGCGAAGCGAACGCGCAAGCGCCGCTGACGGCCATCATGCA
CGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCGGATGG
CGGAGCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGCTCGAATTCG
AAGGTGAAGCTCGTGCGGCAGGTGGCGCTGGAACGGTTGCTGCTGGAGAG
CGACGCGCCCGCGCTTGCTGCGGTCGCGCAGCAACGGAACGAGCCCGCGG
AAATGGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGCGCAACGCGCT
GACATCGTTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTTCCGTC
ATTCGGCGCAAGCACGTCATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:113742..114563+

>Ggra4096.t1 ID=Ggra4096.t1|Name=Ggra4096.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000853_pilon:113742..114563+ (Gracilaria gracilis GNS1m male)
ATGATGATCGATACTCACGCACATATGACCGATTCTCAGTTCTCGTTAGA
TCTAGACGACGTGATCCATCGAGCTCAACGCGCGGGAGTTGCGCACATTG
TGTGCGTGTCAGAATCGCTATGCGATGCGAAACAAGTGCTTCAACTGAGC
AAACAGCACGCCACCATTGTGCACGCCGCGCTGGGGCTGCACCCAGAGCA
CGTGACAACGTTATCCGACGCGCAAGCGTCAAGCGAACTACAGGCAATCA
CAGAGCTGCTACCGCAAGCGGCCGTGGTGGCGATCGGCGAGGTAGGGCTG
GACTTCTCGCCAAGAGTGCTAGCGCAGGCCGCGGACGCCGAGCAAGCAAA
GCGGCGACAACGCAGCACGTTTGATAGCTTCCTGCAGCTGGGTCAACAGA
GCGGGTTGCCACTCAGCGTGCACAGTCGCAGCGCCGGGCACCACGCGCTG
ACTCAAATCTGCGAAGCGAACGCGCAAGCGCCGCTGACGGCCATCATGCA
CGCTTTCGACGGGCGCGCCATACATGCTGTGAACGCGTTGAAGCGGATGG
CGGAGCGTCTGTACTTCTCCATCCCGCCGAGCATTGCGCGCTCGAATTCG
AAGGTGAAGCTCGTGCGGCAGGTGGCGCTGGAACGGTTGCTGCTGGAGAG
CGACGCGCCCGCGCTTGCTGCGGTCGCGCAGCAACGGAACGAGCCCGCGG
AAATGGTGAAGACCGTGCAGTTGATTGCAGGCATCAAAGCGCAACGCGCT
GACATCGTTCGTCAGCAGCTGTGGTACAACAGCGTGCAGCTGTTTCCGTC
ATTCGGCGCAAGCACGTCATGA
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