Ggra4093.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4093.t1
Unique NameGgra4093.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:103168..103782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4093Ggra4093Gracilaria gracilis GNS1m malegenetig00000853_pilon 103168..103782 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4093.t1.start1Ggra4093.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 103168..103170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4093.t1.CDS1Ggra4093.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 103168..103782 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4093.t1.exon1Ggra4093.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 103168..103782 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4093.t1.stop1Ggra4093.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 103780..103782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4093.t1Ggra4093.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 103168..103782 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4093.t1 ID=Ggra4093.t1|Name=Ggra4093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MQHEQIDSSQPQTDAPAPPPILTQLVSIPPIGSRDKTEDRKTPKRSGVLS
PGRAFVNPLYFRRITGSSTSSENESPPFRRVASAVSNPDDKSTTKYLIRT
PKALDSDSDPAWLSKRVMSELSKEAQEGGRAPSPRPADAVQLCVEHNKQM
QVWEDYMALTHGVYENETSSFSFKRTDTLSAPEALPKALEPQDMEDSDVD
DEFF*
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spliced messenger RNA

>Ggra4093.t1 ID=Ggra4093.t1|Name=Ggra4093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000853_pilon:103168..103782+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACATGAACAGATTGATTCCTCTCAACCGCAAACCGACGCCCCTGC
CCCACCGCCAATTCTCACCCAGTTGGTATCCATACCACCAATAGGCTCTC
GCGATAAAACCGAGGATAGAAAGACTCCCAAGAGATCTGGAGTGCTCAGC
CCCGGACGTGCCTTTGTGAATCCGCTATACTTTCGAAGGATTACTGGCAG
TTCTACCAGCTCCGAAAATGAGAGCCCTCCGTTTCGTCGCGTAGCGAGTG
CTGTAAGCAATCCCGACGACAAGTCAACAACAAAGTACCTCATCCGAACG
CCCAAGGCTCTGGACAGTGACTCAGACCCAGCATGGTTGTCAAAGAGGGT
CATGAGCGAATTATCCAAAGAAGCGCAAGAAGGCGGCCGCGCTCCGTCGC
CAAGACCCGCCGATGCGGTTCAACTCTGTGTCGAGCATAACAAGCAAATG
CAGGTATGGGAGGACTACATGGCTCTGACACACGGTGTTTACGAAAACGA
AACAAGCTCCTTCAGTTTCAAAAGAACCGATACGCTCAGTGCACCAGAAG
CCTTACCAAAGGCGCTCGAACCTCAAGATATGGAGGACTCAGACGTCGAT
GATGAGTTCTTTTGA
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protein sequence of Ggra4093.t1

>Ggra4093.t1 ID=Ggra4093.t1|Name=Ggra4093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MQHEQIDSSQPQTDAPAPPPILTQLVSIPPIGSRDKTEDRKTPKRSGVLS
PGRAFVNPLYFRRITGSSTSSENESPPFRRVASAVSNPDDKSTTKYLIRT
PKALDSDSDPAWLSKRVMSELSKEAQEGGRAPSPRPADAVQLCVEHNKQM
QVWEDYMALTHGVYENETSSFSFKRTDTLSAPEALPKALEPQDMEDSDVD
DEFF*
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mRNA from alignment at tig00000853_pilon:103168..103782+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4093.t1 ID=Ggra4093.t1|Name=Ggra4093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000853_pilon:103168..103782+ (Gracilaria gracilis GNS1m male)
ATGCAACATGAACAGATTGATTCCTCTCAACCGCAAACCGACGCCCCTGC
CCCACCGCCAATTCTCACCCAGTTGGTATCCATACCACCAATAGGCTCTC
GCGATAAAACCGAGGATAGAAAGACTCCCAAGAGATCTGGAGTGCTCAGC
CCCGGACGTGCCTTTGTGAATCCGCTATACTTTCGAAGGATTACTGGCAG
TTCTACCAGCTCCGAAAATGAGAGCCCTCCGTTTCGTCGCGTAGCGAGTG
CTGTAAGCAATCCCGACGACAAGTCAACAACAAAGTACCTCATCCGAACG
CCCAAGGCTCTGGACAGTGACTCAGACCCAGCATGGTTGTCAAAGAGGGT
CATGAGCGAATTATCCAAAGAAGCGCAAGAAGGCGGCCGCGCTCCGTCGC
CAAGACCCGCCGATGCGGTTCAACTCTGTGTCGAGCATAACAAGCAAATG
CAGGTATGGGAGGACTACATGGCTCTGACACACGGTGTTTACGAAAACGA
AACAAGCTCCTTCAGTTTCAAAAGAACCGATACGCTCAGTGCACCAGAAG
CCTTACCAAAGGCGCTCGAACCTCAAGATATGGAGGACTCAGACGTCGAT
GATGAGTTCTTTTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:103168..103782+

>Ggra4093.t1 ID=Ggra4093.t1|Name=Ggra4093.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000853_pilon:103168..103782+ (Gracilaria gracilis GNS1m male)
ATGCAACATGAACAGATTGATTCCTCTCAACCGCAAACCGACGCCCCTGC
CCCACCGCCAATTCTCACCCAGTTGGTATCCATACCACCAATAGGCTCTC
GCGATAAAACCGAGGATAGAAAGACTCCCAAGAGATCTGGAGTGCTCAGC
CCCGGACGTGCCTTTGTGAATCCGCTATACTTTCGAAGGATTACTGGCAG
TTCTACCAGCTCCGAAAATGAGAGCCCTCCGTTTCGTCGCGTAGCGAGTG
CTGTAAGCAATCCCGACGACAAGTCAACAACAAAGTACCTCATCCGAACG
CCCAAGGCTCTGGACAGTGACTCAGACCCAGCATGGTTGTCAAAGAGGGT
CATGAGCGAATTATCCAAAGAAGCGCAAGAAGGCGGCCGCGCTCCGTCGC
CAAGACCCGCCGATGCGGTTCAACTCTGTGTCGAGCATAACAAGCAAATG
CAGGTATGGGAGGACTACATGGCTCTGACACACGGTGTTTACGAAAACGA
AACAAGCTCCTTCAGTTTCAAAAGAACCGATACGCTCAGTGCACCAGAAG
CCTTACCAAAGGCGCTCGAACCTCAAGATATGGAGGACTCAGACGTCGAT
GATGAGTTCTTTTGA
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