Ggra409.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra409.t1
Unique Name	Ggra409.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	714

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000928_pilon	contig	tig00000928_pilon:55216..57357 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173025.GEI7407_0504
Preferred name	clpC
PFAMs	AAA,AAA_2,ClpB_D2-small,Clp_N,UVR
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03696
KEGG Pathway	ko01100,map01100
Evalue	0.0
EggNOG OGs	COG0542@1\|root,COG0542@2\|Bacteria,1G0ZH@1117\|Cyanobacteria,1H8UC@1150\|Oscillatoriales
Description	Belongs to the ClpA ClpB family
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra409	Ggra409	Gracilaria gracilis GNS1m male	gene	tig00000928_pilon 55216..57357 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra409.t1.start1	Ggra409.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000928_pilon 55216..55218 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra409.t1.CDS1	Ggra409.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000928_pilon 55216..57357 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra409.t1.exon1	Ggra409.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000928_pilon 55216..57357 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra409.t1.stop1	Ggra409.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000928_pilon 57355..57357 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra409.t1	Ggra409.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000928_pilon 55216..57357 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000928_pilon:55216..57357+
coding sequence from alignment at tig00000928_pilon:55216..57357+

mRNA sequence

>Ggra409.t1 ID=Ggra409.t1|Name=Ggra409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=714bp
MGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEANTNGNNNTQTR
SKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGRRTKNNPVLI
GEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLVAGTKYRGEF
EERLKRIMDEIKSANNIVLVIDEVHTLIGAGAAEGAIDAANLLKPALARG
ELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETIEILFGLRDR
YEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNS
QLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREMEIKAQIAAIA
QSKKNEPNLQMEDPVVTEDDIAEIVAFWTGIPVTKLTKSESEKLMHMEET
LHSRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT
KALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEA
VRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLI
MTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEELKQYFRPEFL
NRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQKIELEVTERFKNRLV
DEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGRIKAGDSAVVDVTDEGKV
TVLLGEQLEILQP*

spliced messenger RNA

>Ggra409.t1 ID=Ggra409.t1|Name=Ggra409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00000928_pilon:55216..57357+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTAGTACGTGAAGGTGAAGGTGTAGCTGCAAGAGTACTAGAAAA
CTTAGCTGTTAATGTAGCCTCTATTAGAACAGAAGTCATTCAGATGTTAG
GTGACAATACAGAAGCTAACACAAATGGAAATAATAACACACAAACTAGA
AGCAAAACTCCTACGCTAGAAGAATTTGGATCAAACCTAACAGAATTAGC
TATAGAGGGTATTTTAGATCCTGTAGTTGGAAGACAAAAAGAGATTGAAC
GAGTAATACAAATATTAGGTAGAAGAACAAAAAACAATCCTGTTTTGATT
GGGGAACCAGGAGTAGGAAAAACAGCCATAGCAGAAGGTTTAGCACAAAG
AATCGCAAATAAAGATATACCTTCTATTCTAGAAGACAAACTAGTTGTAA
CCCTAGATGTTGGTTTATTAGTTGCTGGCACAAAGTATAGAGGAGAATTC
GAAGAAAGACTCAAACGAATTATGGATGAAATAAAATCAGCTAATAATAT
AGTACTAGTTATAGATGAAGTACATACTTTAATTGGAGCTGGTGCGGCAG
AAGGAGCTATAGATGCAGCGAATTTACTGAAACCTGCGTTAGCTAGAGGA
GAATTACAATGTATAGGAGCAACTACATTAGAAGAATATCGTAAACATAT
AGAAAAAGATGCAGCACTTGAAAGACGATTTCAGCCCGTTTTAGTTGGAG
AACCAAGTGTAGAAGAAACTATTGAGATCTTATTTGGATTAAGAGATAGA
TATGAAAAACATCACCAGTTAAAAATGTCAGATGCTGCTTTAGCAGCAGC
AGCTAAATACGCCAATCAATACATCTCAGACCGTTTTTTACCTGATAAAG
CCATTGATTTAATCGATGAAGCTGGCTCAAGAGTTAGATTATTAAACTCT
CAACTACCTCCAGCTGCTAGAGAATTAGATAAAGAGCTAAGAAATGTCCT
AAAAACAAAGGATGAAGCAATCAGAGCGCAAAAATATGAAAAAGCAGAAC
AATACAGAACCAGAGAAATGGAAATTAAAGCTCAAATTGCTGCTATTGCA
CAAAGTAAAAAGAATGAGCCTAATTTACAAATGGAAGATCCTGTAGTCAC
AGAAGATGATATTGCAGAAATAGTCGCATTTTGGACAGGTATTCCAGTAA
CAAAATTAACAAAAAGCGAATCAGAAAAATTGATGCACATGGAAGAAACT
CTCCATAGTCGTATTATTGGACAGGATGAAGCTGTAGTAGCTGTTTCTCG
AGCTATCAGAAGAGCAAGAGTTGGGTTAAAAAACCCTAATCGACCTATTG
CAAGTTTTATATTCTCTGGCCCCACAGGAGTAGGAAAAACTGAATTAACT
AAGGCACTAGCTTCTTATTTTTTTGGTTCACAAGAAGCAATGGTTAGGTT
AGACATGTCTGAATATATGGAAAGACATACTGTATCTAAACTAATCGGCT
CACCACCTGGTTATGTTGGCTATAGTGAAGGTGGATACTTAACAGAAGCT
GTCAGAAAGCGTCCTTATACAGTCATTTTATTTGATGAAATTGAAAAAGC
GCATCCAGATATCTTTAACCTTTTATTACAAATTTTAGAAGATGGTAGAC
TAACGGATGCTAAAGGTAGAACAATAGACTTCAAAAACACTTTATTAATC
ATGACATCTAATATAGGATCAAAGGTTATAGAAAAAGGCGGAGGAAGTTT
AGGATTCGAACTAGGGGAATCACAAACAGAGTCACAATACAATCGTATTA
GATCATTAGTGAATGAAGAATTAAAACAATATTTTCGCCCTGAATTTTTA
AATAGATTAGATGAAATTATAGTATTTAGACAACTTACTAAAGATGAAGT
ACGTGAGATAGCAGAAATTATGCTGCAAGAAGTATTTGAACGTATTAAAC
AACAAAAAATAGAACTAGAAGTAACTGAAAGATTTAAAAATCGATTAGTA
GATGAAGGATATAATCCAAGCTATGGAGCAAGACCACTACGTAGAGCTGT
TATGAGACTGCTAGAAGACAGTTTAGCAGAAGAAGTACTATCAGGTAGAA
TTAAAGCTGGCGATAGTGCAGTTGTAGATGTTACTGATGAAGGTAAGGTC
ACAGTATTATTAGGCGAACAACTAGAAATTTTACAACCTTAA

protein sequence of Ggra409.t1

>Ggra409.t1 ID=Ggra409.t1|Name=Ggra409.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=714bp
MGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEANTNGNNNTQTR
SKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGRRTKNNPVLI
GEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLVAGTKYRGEF
EERLKRIMDEIKSANNIVLVIDEVHTLIGAGAAEGAIDAANLLKPALARG
ELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETIEILFGLRDR
YEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNS
QLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREMEIKAQIAAIA
QSKKNEPNLQMEDPVVTEDDIAEIVAFWTGIPVTKLTKSESEKLMHMEET
LHSRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELT
KALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEA
VRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLI
MTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEELKQYFRPEFL
NRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQKIELEVTERFKNRLV
DEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGRIKAGDSAVVDVTDEGKV
TVLLGEQLEILQP*

mRNA from alignment at tig00000928_pilon:55216..57357+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra409.t1 ID=Ggra409.t1|Name=Ggra409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00000928_pilon:55216..57357+ (Gracilaria gracilis GNS1m male)
ATGGGTTTAGTACGTGAAGGTGAAGGTGTAGCTGCAAGAGTACTAGAAAA
CTTAGCTGTTAATGTAGCCTCTATTAGAACAGAAGTCATTCAGATGTTAG
GTGACAATACAGAAGCTAACACAAATGGAAATAATAACACACAAACTAGA
AGCAAAACTCCTACGCTAGAAGAATTTGGATCAAACCTAACAGAATTAGC
TATAGAGGGTATTTTAGATCCTGTAGTTGGAAGACAAAAAGAGATTGAAC
GAGTAATACAAATATTAGGTAGAAGAACAAAAAACAATCCTGTTTTGATT
GGGGAACCAGGAGTAGGAAAAACAGCCATAGCAGAAGGTTTAGCACAAAG
AATCGCAAATAAAGATATACCTTCTATTCTAGAAGACAAACTAGTTGTAA
CCCTAGATGTTGGTTTATTAGTTGCTGGCACAAAGTATAGAGGAGAATTC
GAAGAAAGACTCAAACGAATTATGGATGAAATAAAATCAGCTAATAATAT
AGTACTAGTTATAGATGAAGTACATACTTTAATTGGAGCTGGTGCGGCAG
AAGGAGCTATAGATGCAGCGAATTTACTGAAACCTGCGTTAGCTAGAGGA
GAATTACAATGTATAGGAGCAACTACATTAGAAGAATATCGTAAACATAT
AGAAAAAGATGCAGCACTTGAAAGACGATTTCAGCCCGTTTTAGTTGGAG
AACCAAGTGTAGAAGAAACTATTGAGATCTTATTTGGATTAAGAGATAGA
TATGAAAAACATCACCAGTTAAAAATGTCAGATGCTGCTTTAGCAGCAGC
AGCTAAATACGCCAATCAATACATCTCAGACCGTTTTTTACCTGATAAAG
CCATTGATTTAATCGATGAAGCTGGCTCAAGAGTTAGATTATTAAACTCT
CAACTACCTCCAGCTGCTAGAGAATTAGATAAAGAGCTAAGAAATGTCCT
AAAAACAAAGGATGAAGCAATCAGAGCGCAAAAATATGAAAAAGCAGAAC
AATACAGAACCAGAGAAATGGAAATTAAAGCTCAAATTGCTGCTATTGCA
CAAAGTAAAAAGAATGAGCCTAATTTACAAATGGAAGATCCTGTAGTCAC
AGAAGATGATATTGCAGAAATAGTCGCATTTTGGACAGGTATTCCAGTAA
CAAAATTAACAAAAAGCGAATCAGAAAAATTGATGCACATGGAAGAAACT
CTCCATAGTCGTATTATTGGACAGGATGAAGCTGTAGTAGCTGTTTCTCG
AGCTATCAGAAGAGCAAGAGTTGGGTTAAAAAACCCTAATCGACCTATTG
CAAGTTTTATATTCTCTGGCCCCACAGGAGTAGGAAAAACTGAATTAACT
AAGGCACTAGCTTCTTATTTTTTTGGTTCACAAGAAGCAATGGTTAGGTT
AGACATGTCTGAATATATGGAAAGACATACTGTATCTAAACTAATCGGCT
CACCACCTGGTTATGTTGGCTATAGTGAAGGTGGATACTTAACAGAAGCT
GTCAGAAAGCGTCCTTATACAGTCATTTTATTTGATGAAATTGAAAAAGC
GCATCCAGATATCTTTAACCTTTTATTACAAATTTTAGAAGATGGTAGAC
TAACGGATGCTAAAGGTAGAACAATAGACTTCAAAAACACTTTATTAATC
ATGACATCTAATATAGGATCAAAGGTTATAGAAAAAGGCGGAGGAAGTTT
AGGATTCGAACTAGGGGAATCACAAACAGAGTCACAATACAATCGTATTA
GATCATTAGTGAATGAAGAATTAAAACAATATTTTCGCCCTGAATTTTTA
AATAGATTAGATGAAATTATAGTATTTAGACAACTTACTAAAGATGAAGT
ACGTGAGATAGCAGAAATTATGCTGCAAGAAGTATTTGAACGTATTAAAC
AACAAAAAATAGAACTAGAAGTAACTGAAAGATTTAAAAATCGATTAGTA
GATGAAGGATATAATCCAAGCTATGGAGCAAGACCACTACGTAGAGCTGT
TATGAGACTGCTAGAAGACAGTTTAGCAGAAGAAGTACTATCAGGTAGAA
TTAAAGCTGGCGATAGTGCAGTTGTAGATGTTACTGATGAAGGTAAGGTC
ACAGTATTATTAGGCGAACAACTAGAAATTTTACAACCTTAA

Coding sequence (CDS) from alignment at tig00000928_pilon:55216..57357+

>Ggra409.t1 ID=Ggra409.t1|Name=Ggra409.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2142bp|location=Sequence derived from alignment at tig00000928_pilon:55216..57357+ (Gracilaria gracilis GNS1m male)
ATGGGTTTAGTACGTGAAGGTGAAGGTGTAGCTGCAAGAGTACTAGAAAA
CTTAGCTGTTAATGTAGCCTCTATTAGAACAGAAGTCATTCAGATGTTAG
GTGACAATACAGAAGCTAACACAAATGGAAATAATAACACACAAACTAGA
AGCAAAACTCCTACGCTAGAAGAATTTGGATCAAACCTAACAGAATTAGC
TATAGAGGGTATTTTAGATCCTGTAGTTGGAAGACAAAAAGAGATTGAAC
GAGTAATACAAATATTAGGTAGAAGAACAAAAAACAATCCTGTTTTGATT
GGGGAACCAGGAGTAGGAAAAACAGCCATAGCAGAAGGTTTAGCACAAAG
AATCGCAAATAAAGATATACCTTCTATTCTAGAAGACAAACTAGTTGTAA
CCCTAGATGTTGGTTTATTAGTTGCTGGCACAAAGTATAGAGGAGAATTC
GAAGAAAGACTCAAACGAATTATGGATGAAATAAAATCAGCTAATAATAT
AGTACTAGTTATAGATGAAGTACATACTTTAATTGGAGCTGGTGCGGCAG
AAGGAGCTATAGATGCAGCGAATTTACTGAAACCTGCGTTAGCTAGAGGA
GAATTACAATGTATAGGAGCAACTACATTAGAAGAATATCGTAAACATAT
AGAAAAAGATGCAGCACTTGAAAGACGATTTCAGCCCGTTTTAGTTGGAG
AACCAAGTGTAGAAGAAACTATTGAGATCTTATTTGGATTAAGAGATAGA
TATGAAAAACATCACCAGTTAAAAATGTCAGATGCTGCTTTAGCAGCAGC
AGCTAAATACGCCAATCAATACATCTCAGACCGTTTTTTACCTGATAAAG
CCATTGATTTAATCGATGAAGCTGGCTCAAGAGTTAGATTATTAAACTCT
CAACTACCTCCAGCTGCTAGAGAATTAGATAAAGAGCTAAGAAATGTCCT
AAAAACAAAGGATGAAGCAATCAGAGCGCAAAAATATGAAAAAGCAGAAC
AATACAGAACCAGAGAAATGGAAATTAAAGCTCAAATTGCTGCTATTGCA
CAAAGTAAAAAGAATGAGCCTAATTTACAAATGGAAGATCCTGTAGTCAC
AGAAGATGATATTGCAGAAATAGTCGCATTTTGGACAGGTATTCCAGTAA
CAAAATTAACAAAAAGCGAATCAGAAAAATTGATGCACATGGAAGAAACT
CTCCATAGTCGTATTATTGGACAGGATGAAGCTGTAGTAGCTGTTTCTCG
AGCTATCAGAAGAGCAAGAGTTGGGTTAAAAAACCCTAATCGACCTATTG
CAAGTTTTATATTCTCTGGCCCCACAGGAGTAGGAAAAACTGAATTAACT
AAGGCACTAGCTTCTTATTTTTTTGGTTCACAAGAAGCAATGGTTAGGTT
AGACATGTCTGAATATATGGAAAGACATACTGTATCTAAACTAATCGGCT
CACCACCTGGTTATGTTGGCTATAGTGAAGGTGGATACTTAACAGAAGCT
GTCAGAAAGCGTCCTTATACAGTCATTTTATTTGATGAAATTGAAAAAGC
GCATCCAGATATCTTTAACCTTTTATTACAAATTTTAGAAGATGGTAGAC
TAACGGATGCTAAAGGTAGAACAATAGACTTCAAAAACACTTTATTAATC
ATGACATCTAATATAGGATCAAAGGTTATAGAAAAAGGCGGAGGAAGTTT
AGGATTCGAACTAGGGGAATCACAAACAGAGTCACAATACAATCGTATTA
GATCATTAGTGAATGAAGAATTAAAACAATATTTTCGCCCTGAATTTTTA
AATAGATTAGATGAAATTATAGTATTTAGACAACTTACTAAAGATGAAGT
ACGTGAGATAGCAGAAATTATGCTGCAAGAAGTATTTGAACGTATTAAAC
AACAAAAAATAGAACTAGAAGTAACTGAAAGATTTAAAAATCGATTAGTA
GATGAAGGATATAATCCAAGCTATGGAGCAAGACCACTACGTAGAGCTGT
TATGAGACTGCTAGAAGACAGTTTAGCAGAAGAAGTACTATCAGGTAGAA
TTAAAGCTGGCGATAGTGCAGTTGTAGATGTTACTGATGAAGGTAAGGTC
ACAGTATTATTAGGCGAACAACTAGAAATTTTACAACCTTAA