Ggra4085.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4085.t1
Unique NameGgra4085.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:86975..87349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4085Ggra4085Gracilaria gracilis GNS1m malegenetig00000853_pilon 86975..87349 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4085.t1.stop1Ggra4085.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 86975..86977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4085.t1.CDS1Ggra4085.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 86975..87349 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4085.t1.exon1Ggra4085.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 86975..87349 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4085.t1.start1Ggra4085.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 87347..87349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4085.t1Ggra4085.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 86975..87349 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4085.t1 ID=Ggra4085.t1|Name=Ggra4085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=125bp
MTENAALRAAVCFIRNGLGTRAHQKVRRKATTATVMAMMGTRAMVAVAAA
EARRRRGDEYLQTQLWKTLALWKITERVEGNQGKAGIAETKLSEGKEMEA
DMRMMRDYGYMGIPLNQALKAREA*
back to top

spliced messenger RNA

>Ggra4085.t1 ID=Ggra4085.t1|Name=Ggra4085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000853_pilon:86975..87349- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAAAACGCAGCTCTAAGAGCTGCTGTGTGTTTCATAAGAAACGG
GCTTGGGACGAGAGCTCATCAGAAAGTGAGGCGGAAGGCGACCACGGCAA
CAGTGATGGCGATGATGGGAACAAGAGCGATGGTAGCAGTAGCAGCAGCG
GAGGCCCGGCGACGACGAGGAGACGAGTACCTTCAAACGCAATTGTGGAA
GACTCTGGCCCTATGGAAGATCACGGAGAGGGTGGAGGGGAACCAGGGCA
AGGCGGGGATAGCCGAAACCAAGTTGAGTGAGGGAAAGGAAATGGAAGCT
GACATGCGCATGATGAGGGATTACGGGTATATGGGCATTCCGTTAAACCA
GGCTCTGAAGGCCAGGGAAGCTTAA
back to top

protein sequence of Ggra4085.t1

>Ggra4085.t1 ID=Ggra4085.t1|Name=Ggra4085.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MTENAALRAAVCFIRNGLGTRAHQKVRRKATTATVMAMMGTRAMVAVAAA
EARRRRGDEYLQTQLWKTLALWKITERVEGNQGKAGIAETKLSEGKEMEA
DMRMMRDYGYMGIPLNQALKAREA*
back to top

mRNA from alignment at tig00000853_pilon:86975..87349-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4085.t1 ID=Ggra4085.t1|Name=Ggra4085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000853_pilon:86975..87349- (Gracilaria gracilis GNS1m male)
ATGACGGAAAACGCAGCTCTAAGAGCTGCTGTGTGTTTCATAAGAAACGG
GCTTGGGACGAGAGCTCATCAGAAAGTGAGGCGGAAGGCGACCACGGCAA
CAGTGATGGCGATGATGGGAACAAGAGCGATGGTAGCAGTAGCAGCAGCG
GAGGCCCGGCGACGACGAGGAGACGAGTACCTTCAAACGCAATTGTGGAA
GACTCTGGCCCTATGGAAGATCACGGAGAGGGTGGAGGGGAACCAGGGCA
AGGCGGGGATAGCCGAAACCAAGTTGAGTGAGGGAAAGGAAATGGAAGCT
GACATGCGCATGATGAGGGATTACGGGTATATGGGCATTCCGTTAAACCA
GGCTCTGAAGGCCAGGGAAGCTTAA
back to top

Coding sequence (CDS) from alignment at tig00000853_pilon:86975..87349-

>Ggra4085.t1 ID=Ggra4085.t1|Name=Ggra4085.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000853_pilon:86975..87349- (Gracilaria gracilis GNS1m male)
ATGACGGAAAACGCAGCTCTAAGAGCTGCTGTGTGTTTCATAAGAAACGG
GCTTGGGACGAGAGCTCATCAGAAAGTGAGGCGGAAGGCGACCACGGCAA
CAGTGATGGCGATGATGGGAACAAGAGCGATGGTAGCAGTAGCAGCAGCG
GAGGCCCGGCGACGACGAGGAGACGAGTACCTTCAAACGCAATTGTGGAA
GACTCTGGCCCTATGGAAGATCACGGAGAGGGTGGAGGGGAACCAGGGCA
AGGCGGGGATAGCCGAAACCAAGTTGAGTGAGGGAAAGGAAATGGAAGCT
GACATGCGCATGATGAGGGATTACGGGTATATGGGCATTCCGTTAAACCA
GGCTCTGAAGGCCAGGGAAGCTTAA
back to top