Ggra4084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4084.t1
Unique NameGgra4084.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:85164..86399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705709.1
Preferred nameGPAT
PFAMsAcyltransferase,GPAT_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K00630
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
GOsGO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576
Evalue6.09e-83
EggNOG OGs28J58@1|root,2QRHE@2759|Eukaryota
EC2.3.1.15
Descriptionsn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s2_g9657_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4084Ggra4084Gracilaria gracilis GNS1m malegenetig00000853_pilon 85164..86399 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4084.t1.stop1Ggra4084.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 85164..85166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4084.t1.CDS1Ggra4084.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 85164..86399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4084.t1.exon1Ggra4084.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 85164..86399 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4084.t1.start1Ggra4084.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 86397..86399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4084.t1Ggra4084.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 85164..86399 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4084.t1 ID=Ggra4084.t1|Name=Ggra4084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MKNYAFVSPLPVARPVRSLTATSTVRSLQGVGHRFHRSHATALISLHQES
HLSTFEAVSPSRLEGVDGLRFYERADHLVNSRQVPSYIVESLKTWHESYG
VAASKNPFLTEDPDDFTEAMFSTLLELCRRAIEDPLNFSSYHRRIRQPFD
HYKFGFDFSSVLLDRPNSSILGVEHIHEAQNYVRQGHNVIFLSNHQSEGD
PYAIDFMLDWIAGCDRQFCEKLVFMAGDRVRNDPMVAPFSAGRNLLTVYS
KKHINDEPDLLNQKLLHNRRTIAESHRLFKKGGTALWFAPSGGRDRMNAE
TGIVEISPFDVGAVATMRFTAERSGTPCHFYPMAIWTYDMLPPPSSVGGA
EIGEERTVKYTPMRMHFGKEIEWKRSVPSSITDKHEMRKAQCEYIESLVV
DGYRQIGGYEH*
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spliced messenger RNA

>Ggra4084.t1 ID=Ggra4084.t1|Name=Ggra4084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000853_pilon:85164..86399- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAATTACGCCTTTGTATCTCCACTGCCTGTCGCACGTCCTGTGCG
TTCATTGACTGCCACCAGCACAGTACGTTCTTTGCAAGGAGTCGGGCATC
GCTTCCATCGTTCGCATGCTACAGCTTTGATTTCCCTCCACCAGGAGAGC
CATCTATCAACCTTTGAAGCCGTCAGTCCCAGTCGCTTGGAAGGCGTGGA
TGGACTTAGGTTCTATGAACGCGCAGATCATCTCGTCAACTCACGCCAGG
TTCCCTCGTACATCGTCGAAAGTTTGAAGACGTGGCATGAGTCTTATGGT
GTCGCCGCTTCGAAGAACCCGTTCTTGACAGAAGATCCAGATGATTTTAC
GGAGGCTATGTTCTCAACCCTACTAGAGCTCTGTCGAAGAGCAATAGAGG
ACCCATTGAATTTCTCTTCGTATCATCGGCGAATCCGTCAACCGTTCGAC
CATTACAAGTTCGGTTTTGACTTCTCTAGCGTTCTTCTTGATCGACCCAA
TAGTTCTATCCTCGGAGTTGAACACATCCATGAAGCGCAGAATTATGTGC
GACAAGGTCACAACGTCATATTCTTGTCTAACCATCAATCCGAGGGCGAC
CCCTATGCCATTGATTTCATGCTGGATTGGATTGCAGGCTGCGACAGACA
GTTTTGCGAGAAACTAGTGTTCATGGCAGGCGACCGTGTACGGAACGACC
CTATGGTGGCTCCGTTCTCAGCGGGTCGTAATTTGCTCACCGTGTATTCG
AAGAAACATATTAACGACGAGCCAGATCTTTTGAATCAAAAACTGCTCCA
CAATAGACGAACGATTGCGGAGTCACACCGCCTGTTTAAGAAGGGTGGAA
CCGCGCTATGGTTTGCTCCCTCAGGAGGACGAGATAGAATGAATGCAGAA
ACGGGAATTGTTGAGATTTCACCTTTCGATGTGGGGGCCGTAGCCACGAT
GCGATTCACTGCAGAGAGGAGTGGAACCCCGTGTCATTTTTATCCAATGG
CAATTTGGACGTACGATATGCTTCCACCACCATCGAGCGTCGGCGGTGCC
GAAATTGGGGAAGAAAGAACTGTCAAATACACACCAATGCGTATGCATTT
CGGCAAAGAAATCGAATGGAAGCGATCTGTCCCGTCAAGTATTACGGACA
AACACGAGATGAGAAAAGCCCAATGTGAATACATTGAGAGTCTTGTTGTG
GATGGGTATAGACAAATTGGTGGGTATGAACATTGA
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protein sequence of Ggra4084.t1

>Ggra4084.t1 ID=Ggra4084.t1|Name=Ggra4084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MKNYAFVSPLPVARPVRSLTATSTVRSLQGVGHRFHRSHATALISLHQES
HLSTFEAVSPSRLEGVDGLRFYERADHLVNSRQVPSYIVESLKTWHESYG
VAASKNPFLTEDPDDFTEAMFSTLLELCRRAIEDPLNFSSYHRRIRQPFD
HYKFGFDFSSVLLDRPNSSILGVEHIHEAQNYVRQGHNVIFLSNHQSEGD
PYAIDFMLDWIAGCDRQFCEKLVFMAGDRVRNDPMVAPFSAGRNLLTVYS
KKHINDEPDLLNQKLLHNRRTIAESHRLFKKGGTALWFAPSGGRDRMNAE
TGIVEISPFDVGAVATMRFTAERSGTPCHFYPMAIWTYDMLPPPSSVGGA
EIGEERTVKYTPMRMHFGKEIEWKRSVPSSITDKHEMRKAQCEYIESLVV
DGYRQIGGYEH*
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mRNA from alignment at tig00000853_pilon:85164..86399-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4084.t1 ID=Ggra4084.t1|Name=Ggra4084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000853_pilon:85164..86399- (Gracilaria gracilis GNS1m male)
ATGAAAAATTACGCCTTTGTATCTCCACTGCCTGTCGCACGTCCTGTGCG
TTCATTGACTGCCACCAGCACAGTACGTTCTTTGCAAGGAGTCGGGCATC
GCTTCCATCGTTCGCATGCTACAGCTTTGATTTCCCTCCACCAGGAGAGC
CATCTATCAACCTTTGAAGCCGTCAGTCCCAGTCGCTTGGAAGGCGTGGA
TGGACTTAGGTTCTATGAACGCGCAGATCATCTCGTCAACTCACGCCAGG
TTCCCTCGTACATCGTCGAAAGTTTGAAGACGTGGCATGAGTCTTATGGT
GTCGCCGCTTCGAAGAACCCGTTCTTGACAGAAGATCCAGATGATTTTAC
GGAGGCTATGTTCTCAACCCTACTAGAGCTCTGTCGAAGAGCAATAGAGG
ACCCATTGAATTTCTCTTCGTATCATCGGCGAATCCGTCAACCGTTCGAC
CATTACAAGTTCGGTTTTGACTTCTCTAGCGTTCTTCTTGATCGACCCAA
TAGTTCTATCCTCGGAGTTGAACACATCCATGAAGCGCAGAATTATGTGC
GACAAGGTCACAACGTCATATTCTTGTCTAACCATCAATCCGAGGGCGAC
CCCTATGCCATTGATTTCATGCTGGATTGGATTGCAGGCTGCGACAGACA
GTTTTGCGAGAAACTAGTGTTCATGGCAGGCGACCGTGTACGGAACGACC
CTATGGTGGCTCCGTTCTCAGCGGGTCGTAATTTGCTCACCGTGTATTCG
AAGAAACATATTAACGACGAGCCAGATCTTTTGAATCAAAAACTGCTCCA
CAATAGACGAACGATTGCGGAGTCACACCGCCTGTTTAAGAAGGGTGGAA
CCGCGCTATGGTTTGCTCCCTCAGGAGGACGAGATAGAATGAATGCAGAA
ACGGGAATTGTTGAGATTTCACCTTTCGATGTGGGGGCCGTAGCCACGAT
GCGATTCACTGCAGAGAGGAGTGGAACCCCGTGTCATTTTTATCCAATGG
CAATTTGGACGTACGATATGCTTCCACCACCATCGAGCGTCGGCGGTGCC
GAAATTGGGGAAGAAAGAACTGTCAAATACACACCAATGCGTATGCATTT
CGGCAAAGAAATCGAATGGAAGCGATCTGTCCCGTCAAGTATTACGGACA
AACACGAGATGAGAAAAGCCCAATGTGAATACATTGAGAGTCTTGTTGTG
GATGGGTATAGACAAATTGGTGGGTATGAACATTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:85164..86399-

>Ggra4084.t1 ID=Ggra4084.t1|Name=Ggra4084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000853_pilon:85164..86399- (Gracilaria gracilis GNS1m male)
ATGAAAAATTACGCCTTTGTATCTCCACTGCCTGTCGCACGTCCTGTGCG
TTCATTGACTGCCACCAGCACAGTACGTTCTTTGCAAGGAGTCGGGCATC
GCTTCCATCGTTCGCATGCTACAGCTTTGATTTCCCTCCACCAGGAGAGC
CATCTATCAACCTTTGAAGCCGTCAGTCCCAGTCGCTTGGAAGGCGTGGA
TGGACTTAGGTTCTATGAACGCGCAGATCATCTCGTCAACTCACGCCAGG
TTCCCTCGTACATCGTCGAAAGTTTGAAGACGTGGCATGAGTCTTATGGT
GTCGCCGCTTCGAAGAACCCGTTCTTGACAGAAGATCCAGATGATTTTAC
GGAGGCTATGTTCTCAACCCTACTAGAGCTCTGTCGAAGAGCAATAGAGG
ACCCATTGAATTTCTCTTCGTATCATCGGCGAATCCGTCAACCGTTCGAC
CATTACAAGTTCGGTTTTGACTTCTCTAGCGTTCTTCTTGATCGACCCAA
TAGTTCTATCCTCGGAGTTGAACACATCCATGAAGCGCAGAATTATGTGC
GACAAGGTCACAACGTCATATTCTTGTCTAACCATCAATCCGAGGGCGAC
CCCTATGCCATTGATTTCATGCTGGATTGGATTGCAGGCTGCGACAGACA
GTTTTGCGAGAAACTAGTGTTCATGGCAGGCGACCGTGTACGGAACGACC
CTATGGTGGCTCCGTTCTCAGCGGGTCGTAATTTGCTCACCGTGTATTCG
AAGAAACATATTAACGACGAGCCAGATCTTTTGAATCAAAAACTGCTCCA
CAATAGACGAACGATTGCGGAGTCACACCGCCTGTTTAAGAAGGGTGGAA
CCGCGCTATGGTTTGCTCCCTCAGGAGGACGAGATAGAATGAATGCAGAA
ACGGGAATTGTTGAGATTTCACCTTTCGATGTGGGGGCCGTAGCCACGAT
GCGATTCACTGCAGAGAGGAGTGGAACCCCGTGTCATTTTTATCCAATGG
CAATTTGGACGTACGATATGCTTCCACCACCATCGAGCGTCGGCGGTGCC
GAAATTGGGGAAGAAAGAACTGTCAAATACACACCAATGCGTATGCATTT
CGGCAAAGAAATCGAATGGAAGCGATCTGTCCCGTCAAGTATTACGGACA
AACACGAGATGAGAAAAGCCCAATGTGAATACATTGAGAGTCTTGTTGTG
GATGGGTATAGACAAATTGGTGGGTATGAACATTGA
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