Ggra4083.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4083.t1
Unique NameGgra4083.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:83546..84574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703841.1
Preferred namecit-1.2
PFAMsBTB,Cyclin_C,Cyclin_N
Max annot lvl2759|Eukaryota
KEGG koko:K15188
KEGG Pathwayko05202,map05202
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue2.78e-53
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4083Ggra4083Gracilaria gracilis GNS1m malegenetig00000853_pilon 83546..84574 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4083.t1.start1Ggra4083.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 83546..83548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4083.t1.CDS1Ggra4083.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 83546..84574 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4083.t1.exon1Ggra4083.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 83546..84574 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4083.t1.stop1Ggra4083.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 84572..84574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4083.t1Ggra4083.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 83546..84574 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4083.t1 ID=Ggra4083.t1|Name=Ggra4083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MSRPHNSSLDDSKRGIKRPNQHIGGVSSPVQTSEDNSWLFTEEEVTETPS
RVQGLPEQAELKVIAKTAQFIQECGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LFENSPGYYEEKNHILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGSD
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSAKLHNRPLPDG
TTRERATGKRILAWHEFFKTNLNRVEEICKILLDMYELEDKASTLFKHGA
GVLDSIPASHPAKRRKTESVKLESTPIENDSRTRIETYTAYR*
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spliced messenger RNA

>Ggra4083.t1 ID=Ggra4083.t1|Name=Ggra4083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000853_pilon:83546..84574+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGACCACACAATTCTTCCCTTGATGACTCCAAGCGAGGAATAAA
ACGCCCGAATCAACACATCGGTGGAGTTTCTTCCCCCGTTCAGACATCGG
AAGATAATTCCTGGTTATTTACTGAGGAAGAGGTAACAGAAACTCCGTCG
AGAGTACAAGGACTTCCTGAACAGGCAGAGCTCAAAGTTATAGCAAAAAC
CGCACAGTTTATTCAAGAATGCGGACGTGAACTTCAAGTCCCTCAGCTCA
CGATGTCCGTCGCCGTCAAATTCTTTCAGCGCTTCTTCATGTTGGAAAGC
ATGCTCAATCATCCACCACCGCTTGTGGCCGCCGCTTGCCTGTTCCTCTC
TTGTAAGGTACAGGAAACACATAAACGTCTTAAGGATATTATCTACTGGA
CTGTTAAAGTGCGAACAAGAAACACCAAGGATTTTCCTGAAGGTATGGAT
TTGTTCGAGAATTCTCCCGGATACTATGAGGAGAAGAATCATATTCTTGA
CAAGGAACGTGAAGTGCTGCGCGTTCTAAACTTTGATCTCACAGTTGACC
ATCCGTACAAACATTTATGGACTCTGACAAAGTCATATCTCGGGAGTGAT
CAAGTCCAGAAATCGATCACCCAAGCCGGCTGGAATTTTTTGAATGACTC
ATTTAGAACATATCTGCACGTTAGATACGACGCGAAGGAAGTCGCGACAG
CAGCTTTCTTCATGTCTGCCAAACTCCACAATCGTCCTCTGCCGGACGGT
ACCACGAGGGAACGCGCAACAGGCAAGCGAATCCTGGCTTGGCATGAGTT
CTTCAAGACCAACCTCAATCGCGTTGAAGAGATTTGTAAGATTCTTCTTG
ATATGTATGAACTGGAAGACAAAGCTTCTACTCTTTTTAAACATGGGGCC
GGTGTTTTGGATTCCATTCCGGCCAGCCATCCTGCGAAGCGTCGAAAGAC
CGAATCAGTCAAACTGGAATCAACCCCAATTGAGAATGATTCTCGAACAA
GAATCGAGACTTACACCGCTTATCGTTAA
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protein sequence of Ggra4083.t1

>Ggra4083.t1 ID=Ggra4083.t1|Name=Ggra4083.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MSRPHNSSLDDSKRGIKRPNQHIGGVSSPVQTSEDNSWLFTEEEVTETPS
RVQGLPEQAELKVIAKTAQFIQECGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LFENSPGYYEEKNHILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGSD
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSAKLHNRPLPDG
TTRERATGKRILAWHEFFKTNLNRVEEICKILLDMYELEDKASTLFKHGA
GVLDSIPASHPAKRRKTESVKLESTPIENDSRTRIETYTAYR*
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mRNA from alignment at tig00000853_pilon:83546..84574+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4083.t1 ID=Ggra4083.t1|Name=Ggra4083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000853_pilon:83546..84574+ (Gracilaria gracilis GNS1m male)
ATGTCGCGACCACACAATTCTTCCCTTGATGACTCCAAGCGAGGAATAAA
ACGCCCGAATCAACACATCGGTGGAGTTTCTTCCCCCGTTCAGACATCGG
AAGATAATTCCTGGTTATTTACTGAGGAAGAGGTAACAGAAACTCCGTCG
AGAGTACAAGGACTTCCTGAACAGGCAGAGCTCAAAGTTATAGCAAAAAC
CGCACAGTTTATTCAAGAATGCGGACGTGAACTTCAAGTCCCTCAGCTCA
CGATGTCCGTCGCCGTCAAATTCTTTCAGCGCTTCTTCATGTTGGAAAGC
ATGCTCAATCATCCACCACCGCTTGTGGCCGCCGCTTGCCTGTTCCTCTC
TTGTAAGGTACAGGAAACACATAAACGTCTTAAGGATATTATCTACTGGA
CTGTTAAAGTGCGAACAAGAAACACCAAGGATTTTCCTGAAGGTATGGAT
TTGTTCGAGAATTCTCCCGGATACTATGAGGAGAAGAATCATATTCTTGA
CAAGGAACGTGAAGTGCTGCGCGTTCTAAACTTTGATCTCACAGTTGACC
ATCCGTACAAACATTTATGGACTCTGACAAAGTCATATCTCGGGAGTGAT
CAAGTCCAGAAATCGATCACCCAAGCCGGCTGGAATTTTTTGAATGACTC
ATTTAGAACATATCTGCACGTTAGATACGACGCGAAGGAAGTCGCGACAG
CAGCTTTCTTCATGTCTGCCAAACTCCACAATCGTCCTCTGCCGGACGGT
ACCACGAGGGAACGCGCAACAGGCAAGCGAATCCTGGCTTGGCATGAGTT
CTTCAAGACCAACCTCAATCGCGTTGAAGAGATTTGTAAGATTCTTCTTG
ATATGTATGAACTGGAAGACAAAGCTTCTACTCTTTTTAAACATGGGGCC
GGTGTTTTGGATTCCATTCCGGCCAGCCATCCTGCGAAGCGTCGAAAGAC
CGAATCAGTCAAACTGGAATCAACCCCAATTGAGAATGATTCTCGAACAA
GAATCGAGACTTACACCGCTTATCGTTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:83546..84574+

>Ggra4083.t1 ID=Ggra4083.t1|Name=Ggra4083.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000853_pilon:83546..84574+ (Gracilaria gracilis GNS1m male)
ATGTCGCGACCACACAATTCTTCCCTTGATGACTCCAAGCGAGGAATAAA
ACGCCCGAATCAACACATCGGTGGAGTTTCTTCCCCCGTTCAGACATCGG
AAGATAATTCCTGGTTATTTACTGAGGAAGAGGTAACAGAAACTCCGTCG
AGAGTACAAGGACTTCCTGAACAGGCAGAGCTCAAAGTTATAGCAAAAAC
CGCACAGTTTATTCAAGAATGCGGACGTGAACTTCAAGTCCCTCAGCTCA
CGATGTCCGTCGCCGTCAAATTCTTTCAGCGCTTCTTCATGTTGGAAAGC
ATGCTCAATCATCCACCACCGCTTGTGGCCGCCGCTTGCCTGTTCCTCTC
TTGTAAGGTACAGGAAACACATAAACGTCTTAAGGATATTATCTACTGGA
CTGTTAAAGTGCGAACAAGAAACACCAAGGATTTTCCTGAAGGTATGGAT
TTGTTCGAGAATTCTCCCGGATACTATGAGGAGAAGAATCATATTCTTGA
CAAGGAACGTGAAGTGCTGCGCGTTCTAAACTTTGATCTCACAGTTGACC
ATCCGTACAAACATTTATGGACTCTGACAAAGTCATATCTCGGGAGTGAT
CAAGTCCAGAAATCGATCACCCAAGCCGGCTGGAATTTTTTGAATGACTC
ATTTAGAACATATCTGCACGTTAGATACGACGCGAAGGAAGTCGCGACAG
CAGCTTTCTTCATGTCTGCCAAACTCCACAATCGTCCTCTGCCGGACGGT
ACCACGAGGGAACGCGCAACAGGCAAGCGAATCCTGGCTTGGCATGAGTT
CTTCAAGACCAACCTCAATCGCGTTGAAGAGATTTGTAAGATTCTTCTTG
ATATGTATGAACTGGAAGACAAAGCTTCTACTCTTTTTAAACATGGGGCC
GGTGTTTTGGATTCCATTCCGGCCAGCCATCCTGCGAAGCGTCGAAAGAC
CGAATCAGTCAAACTGGAATCAACCCCAATTGAGAATGATTCTCGAACAA
GAATCGAGACTTACACCGCTTATCGTTAA
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