Ggra4081.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4081.t1
Unique NameGgra4081.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:78828..79493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4081Ggra4081Gracilaria gracilis GNS1m malegenetig00000853_pilon 78828..79493 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4081.t1.stop1Ggra4081.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 78828..78830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4081.t1.CDS1Ggra4081.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 78828..79493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4081.t1.exon1Ggra4081.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 78828..79493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4081.t1.start1Ggra4081.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 79491..79493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4081.t1Ggra4081.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 78828..79493 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4081.t1 ID=Ggra4081.t1|Name=Ggra4081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MSTHVSETEQTHAFVHPMDGEGLPSLLRRCVPKVQEKRANAYNRLNEALR
DSTVINARPKPSGGDSKVNDPFHVFDQTALHSKEYPVVCAHVTEDLKLCS
EAIMRLRDLLSDYKSLKEPIGNTPESEVSTALKWLDTLQDLEEQKLVTTV
SVHAISRSNAERKKSQVESTPTPSTSLFASSDPEVKRKLAGYAKQLNKID
TDINFLMQEIMEYWLECEETR*
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spliced messenger RNA

>Ggra4081.t1 ID=Ggra4081.t1|Name=Ggra4081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000853_pilon:78828..79493- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACTCATGTTTCAGAGACCGAACAGACACACGCTTTTGTGCATCC
CATGGATGGGGAGGGATTACCGTCGTTACTTCGGAGGTGCGTCCCAAAAG
TGCAGGAAAAGAGAGCCAATGCTTATAACAGGCTGAACGAGGCTCTGCGG
GACAGCACTGTGATAAATGCTAGGCCAAAACCTTCAGGCGGGGATTCAAA
AGTGAACGATCCCTTCCATGTTTTTGACCAGACGGCATTGCATTCGAAGG
AATATCCTGTCGTATGTGCTCACGTTACTGAAGATTTAAAGCTATGCAGT
GAAGCCATAATGAGATTAAGAGATTTGCTTTCTGATTACAAGAGCCTCAA
AGAACCAATCGGTAATACGCCAGAATCAGAGGTTTCGACGGCCCTTAAAT
GGCTCGATACGCTGCAAGATTTGGAAGAACAAAAGCTGGTGACTACCGTA
TCTGTACATGCAATATCTAGGAGCAATGCAGAAAGGAAGAAGTCTCAGGT
GGAAAGTACACCAACGCCTTCAACTTCGTTGTTTGCCTCAAGCGATCCAG
AAGTAAAACGAAAACTAGCTGGATATGCCAAACAGCTGAACAAGATCGAT
ACAGATATAAACTTCCTAATGCAGGAAATCATGGAGTATTGGTTGGAATG
CGAAGAAACTCGATAA
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protein sequence of Ggra4081.t1

>Ggra4081.t1 ID=Ggra4081.t1|Name=Ggra4081.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MSTHVSETEQTHAFVHPMDGEGLPSLLRRCVPKVQEKRANAYNRLNEALR
DSTVINARPKPSGGDSKVNDPFHVFDQTALHSKEYPVVCAHVTEDLKLCS
EAIMRLRDLLSDYKSLKEPIGNTPESEVSTALKWLDTLQDLEEQKLVTTV
SVHAISRSNAERKKSQVESTPTPSTSLFASSDPEVKRKLAGYAKQLNKID
TDINFLMQEIMEYWLECEETR*
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mRNA from alignment at tig00000853_pilon:78828..79493-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4081.t1 ID=Ggra4081.t1|Name=Ggra4081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000853_pilon:78828..79493- (Gracilaria gracilis GNS1m male)
ATGAGCACTCATGTTTCAGAGACCGAACAGACACACGCTTTTGTGCATCC
CATGGATGGGGAGGGATTACCGTCGTTACTTCGGAGGTGCGTCCCAAAAG
TGCAGGAAAAGAGAGCCAATGCTTATAACAGGCTGAACGAGGCTCTGCGG
GACAGCACTGTGATAAATGCTAGGCCAAAACCTTCAGGCGGGGATTCAAA
AGTGAACGATCCCTTCCATGTTTTTGACCAGACGGCATTGCATTCGAAGG
AATATCCTGTCGTATGTGCTCACGTTACTGAAGATTTAAAGCTATGCAGT
GAAGCCATAATGAGATTAAGAGATTTGCTTTCTGATTACAAGAGCCTCAA
AGAACCAATCGGTAATACGCCAGAATCAGAGGTTTCGACGGCCCTTAAAT
GGCTCGATACGCTGCAAGATTTGGAAGAACAAAAGCTGGTGACTACCGTA
TCTGTACATGCAATATCTAGGAGCAATGCAGAAAGGAAGAAGTCTCAGGT
GGAAAGTACACCAACGCCTTCAACTTCGTTGTTTGCCTCAAGCGATCCAG
AAGTAAAACGAAAACTAGCTGGATATGCCAAACAGCTGAACAAGATCGAT
ACAGATATAAACTTCCTAATGCAGGAAATCATGGAGTATTGGTTGGAATG
CGAAGAAACTCGATAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:78828..79493-

>Ggra4081.t1 ID=Ggra4081.t1|Name=Ggra4081.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000853_pilon:78828..79493- (Gracilaria gracilis GNS1m male)
ATGAGCACTCATGTTTCAGAGACCGAACAGACACACGCTTTTGTGCATCC
CATGGATGGGGAGGGATTACCGTCGTTACTTCGGAGGTGCGTCCCAAAAG
TGCAGGAAAAGAGAGCCAATGCTTATAACAGGCTGAACGAGGCTCTGCGG
GACAGCACTGTGATAAATGCTAGGCCAAAACCTTCAGGCGGGGATTCAAA
AGTGAACGATCCCTTCCATGTTTTTGACCAGACGGCATTGCATTCGAAGG
AATATCCTGTCGTATGTGCTCACGTTACTGAAGATTTAAAGCTATGCAGT
GAAGCCATAATGAGATTAAGAGATTTGCTTTCTGATTACAAGAGCCTCAA
AGAACCAATCGGTAATACGCCAGAATCAGAGGTTTCGACGGCCCTTAAAT
GGCTCGATACGCTGCAAGATTTGGAAGAACAAAAGCTGGTGACTACCGTA
TCTGTACATGCAATATCTAGGAGCAATGCAGAAAGGAAGAAGTCTCAGGT
GGAAAGTACACCAACGCCTTCAACTTCGTTGTTTGCCTCAAGCGATCCAG
AAGTAAAACGAAAACTAGCTGGATATGCCAAACAGCTGAACAAGATCGAT
ACAGATATAAACTTCCTAATGCAGGAAATCATGGAGTATTGGTTGGAATG
CGAAGAAACTCGATAA
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