Ggra4077.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4077.t1
Unique NameGgra4077.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:73027..73558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4077Ggra4077Gracilaria gracilis GNS1m malegenetig00000853_pilon 73027..73558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1Ggra4077.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 73027..73558 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1.stop1Ggra4077.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 73027..73029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1.CDS1Ggra4077.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 73027..73138 -
Ggra4077.t1.CDS2Ggra4077.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 73266..73360 -
Ggra4077.t1.CDS3Ggra4077.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 73529..73558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1.exon1Ggra4077.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 73027..73138 -
Ggra4077.t1.exon2Ggra4077.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 73266..73360 -
Ggra4077.t1.exon3Ggra4077.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 73529..73558 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1.intron1Ggra4077.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 73139..73265 -
Ggra4077.t1.intron2Ggra4077.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 73361..73528 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4077.t1.start1Ggra4077.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 73556..73558 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4077.t1 ID=Ggra4077.t1|Name=Ggra4077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=79bp
MDTNLSTATTGPVLEESNGSFSVVIRHDCKTNQSVLRALNSRLIWPSFTP
SMESDYKDTTTGNTDSMYSTDSIYLLCS*
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spliced messenger RNA

>Ggra4077.t1 ID=Ggra4077.t1|Name=Ggra4077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00000853_pilon:73027..73558- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGAATTTGTCAACGGCAACAACGGGGCCTGTTCTGGAGGAATC
AAATGGATCCTTTTCGGTTGTTATCAGGCATGACTGCAAAACCAATCAAT
CAGTCTTACGAGCCTTGAACTCAAGACTAATCTGGCCGAGTTTCACGCCT
TCGATGGAGAGTGATTACAAAGATACAACGACAGGTAACACTGATTCTAT
GTACTCCACTGATTCTATATATCTACTCTGTAGTTGA
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protein sequence of Ggra4077.t1

>Ggra4077.t1 ID=Ggra4077.t1|Name=Ggra4077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=79bp
MDTNLSTATTGPVLEESNGSFSVVIRHDCKTNQSVLRALNSRLIWPSFTP
SMESDYKDTTTGNTDSMYSTDSIYLLCS*
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mRNA from alignment at tig00000853_pilon:73027..73558-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4077.t1 ID=Ggra4077.t1|Name=Ggra4077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp|location=Sequence derived from alignment at tig00000853_pilon:73027..73558- (Gracilaria gracilis GNS1m male)
ATGGATACGAATTTGTCAACGGCAACAACGGTACGTTCTTGCTGGCGCTC
CTTGACGCGTTAATGATTTGGCGACGATGCGTTATCCTCTTTAAGCCTTG
TACCTACACGGGAATCAGAGGATTGTATGGGTTGCTTGTGTTGAAAAGGC
GGGAAAGTTTCTGATTCGAAAACATATTTTTGGAAAACTGAGACCCAGGG
GCCTGTTCTGGAGGAATCAAATGGATCCTTTTCGGTTGTTATCAGGCATG
ACTGCAAAACCAATCAATCAGTCTTACGAGCCTTGAACTCAAGGTAAGCT
TCTTTGCCGTGCATCCACTGTAGCTCTACTGTATCTACAACTCCTTCCTT
CCCCTGCCGCTGACTGGGCCTATTTCAAAACGTGATACCGCTCATCGAAA
CCGGAATGGCCAAGATCAAGACTAATCTGGCCGAGTTTCACGCCTTCGAT
GGAGAGTGATTACAAAGATACAACGACAGGTAACACTGATTCTATGTACT
CCACTGATTCTATATATCTACTCTGTAGTTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:73027..73558-

>Ggra4077.t1 ID=Ggra4077.t1|Name=Ggra4077.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00000853_pilon:73027..73558- (Gracilaria gracilis GNS1m male)
ATGGATACGAATTTGTCAACGGCAACAACGGGGCCTGTTCTGGAGGAATC
AAATGGATCCTTTTCGGTTGTTATCAGGCATGACTGCAAAACCAATCAAT
CAGTCTTACGAGCCTTGAACTCAAGACTAATCTGGCCGAGTTTCACGCCT
TCGATGGAGAGTGATTACAAAGATACAACGACAGGTAACACTGATTCTAT
GTACTCCACTGATTCTATATATCTACTCTGTAGTTGA
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