Ggra4076.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4076.t1
Unique NameGgra4076.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:69162..70817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708387.1
PFAMsAsp
Max annot lvl2759|Eukaryota
KEGG koko:K04521,ko:K06002,ko:K07747
KEGG Pathwayko04974,ko05010,map04974,map05010
Evalue5.84e-101
EggNOG OGsKOG1339@1|root,KOG1339@2759|Eukaryota
EC3.4.23.1,3.4.23.45,3.4.23.46
Descriptionaspartic-type endopeptidase activity
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4076Ggra4076Gracilaria gracilis GNS1m malegenetig00000853_pilon 69162..70817 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4076.t1.stop1Ggra4076.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 69162..69164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4076.t1.CDS1Ggra4076.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 69162..70817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4076.t1.exon1Ggra4076.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 69162..70817 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4076.t1.start1Ggra4076.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 70815..70817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4076.t1Ggra4076.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 69162..70817 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4076.t1 ID=Ggra4076.t1|Name=Ggra4076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MAVASIILLFLSCLAGSFSAELIHLSLRRKNVSASRVFSHHGRPWAAGSK
AQFPIKLFARNKLPAQEMKGSIVPVGEYYLTLLFGGQPINVQIDTGSSTM
AVPLLQCVNCQPNDHRFDISTARGSAGLISCESQTCRPNSCGAMSQCTKC
SSSRACCSSVEPKACGFFLAYADQSGVAGALAEAMVGIGGMTVPLAFGAV
LRETDDFEAENVDGIFGMAYKALACNPTCVRPLFDTLVANGKVDRDVFSI
CTGASGGTLVLGGSNSNLYEGELQYVPMTHRGIKLFYGVKIHGMKVNDES
LSLPSFSKGIVDSGTTVLVVTTNTYGRLRSYFQSNFCNVPGLCAEGASGY
GRQLGEGNVAHQDSIDMIHRLGNSTERAAGQTWFHPGYCAQLSDEYIAML
PTLTIMLDNGVALELEPDVYMLRYESESRNPFEGRAIYRCLGISYLDNLD
QMNNNVILGDTVLQKYYVEYDRENDRVGFAKARKCYDPDAVRVAEGVRGA
HHRSRGLLPTWLTRTLVFFSIAVWIFILAVCAQDAFNRYRQRGYSNIPTG
Q*
back to top

spliced messenger RNA

>Ggra4076.t1 ID=Ggra4076.t1|Name=Ggra4076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000853_pilon:69162..70817- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGGCATCGATAATCTTACTATTTCTCTCCTGCTTAGCGGGCAG
TTTTAGTGCTGAGCTTATCCATCTTTCACTTCGTCGAAAAAACGTTTCCG
CATCTCGTGTGTTCTCGCATCATGGTCGGCCGTGGGCAGCTGGCTCCAAA
GCCCAATTTCCTATCAAGCTCTTCGCACGCAACAAACTTCCAGCTCAGGA
GATGAAAGGAAGCATAGTTCCCGTTGGAGAATACTATCTCACTTTACTGT
TTGGTGGACAACCTATAAACGTGCAGATCGATACCGGCAGTTCAACGATG
GCAGTACCGCTGTTGCAGTGCGTCAATTGCCAACCCAACGATCATCGCTT
TGACATTTCTACCGCTCGTGGTTCAGCAGGGCTTATTTCGTGTGAATCTC
AGACTTGTAGACCGAACAGTTGCGGGGCAATGAGCCAATGCACCAAATGT
TCTTCCTCTAGAGCATGCTGCTCATCTGTTGAGCCCAAGGCGTGTGGGTT
CTTCCTAGCATACGCTGATCAATCTGGTGTGGCTGGTGCACTTGCAGAGG
CCATGGTTGGAATTGGAGGAATGACTGTTCCTCTTGCTTTTGGAGCGGTT
CTCCGGGAAACTGATGATTTTGAAGCCGAGAATGTTGATGGTATCTTTGG
TATGGCGTATAAAGCTCTAGCCTGCAACCCAACATGTGTGCGTCCCTTAT
TTGATACGCTCGTCGCAAATGGCAAAGTTGATCGAGATGTTTTCTCGATC
TGTACTGGGGCGAGTGGCGGAACTCTTGTTCTTGGAGGCTCGAATTCGAA
TCTTTATGAAGGAGAGTTGCAATACGTGCCAATGACCCACCGGGGCATTA
AACTCTTCTATGGTGTAAAGATACATGGTATGAAGGTGAACGATGAAAGC
TTAAGCCTTCCCAGCTTTTCGAAAGGTATCGTTGATTCTGGTACGACTGT
CTTAGTGGTCACGACAAACACATACGGAAGGCTTCGTAGCTACTTTCAGT
CCAATTTCTGCAATGTCCCCGGGTTGTGCGCTGAAGGCGCGAGTGGTTAT
GGGCGGCAGTTAGGGGAGGGCAATGTCGCTCATCAGGACAGCATCGATAT
GATTCATCGACTTGGAAATTCGACCGAAAGAGCCGCAGGCCAGACATGGT
TTCACCCAGGATACTGTGCCCAACTCAGTGACGAGTATATTGCGATGCTC
CCTACACTGACAATTATGTTAGATAACGGTGTAGCTCTCGAACTGGAGCC
AGATGTTTACATGCTGCGGTATGAGTCGGAGTCCAGAAATCCTTTTGAAG
GAAGAGCCATATATAGGTGCCTCGGCATTTCGTACTTGGATAATCTTGAC
CAGATGAATAATAATGTGATTCTTGGCGATACTGTGCTTCAGAAGTACTA
TGTCGAGTATGACCGCGAGAATGACAGAGTTGGCTTTGCGAAAGCGAGAA
AATGTTATGATCCGGATGCGGTACGAGTCGCAGAAGGTGTTCGCGGCGCC
CACCACCGCAGCAGGGGTTTGCTCCCGACATGGCTCACCCGAACCCTGGT
GTTCTTCTCAATTGCCGTGTGGATCTTCATCCTAGCAGTCTGCGCCCAGG
ATGCGTTCAACCGATACAGACAGAGAGGATACAGTAATATCCCAACGGGC
CAATAG
back to top

protein sequence of Ggra4076.t1

>Ggra4076.t1 ID=Ggra4076.t1|Name=Ggra4076.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MAVASIILLFLSCLAGSFSAELIHLSLRRKNVSASRVFSHHGRPWAAGSK
AQFPIKLFARNKLPAQEMKGSIVPVGEYYLTLLFGGQPINVQIDTGSSTM
AVPLLQCVNCQPNDHRFDISTARGSAGLISCESQTCRPNSCGAMSQCTKC
SSSRACCSSVEPKACGFFLAYADQSGVAGALAEAMVGIGGMTVPLAFGAV
LRETDDFEAENVDGIFGMAYKALACNPTCVRPLFDTLVANGKVDRDVFSI
CTGASGGTLVLGGSNSNLYEGELQYVPMTHRGIKLFYGVKIHGMKVNDES
LSLPSFSKGIVDSGTTVLVVTTNTYGRLRSYFQSNFCNVPGLCAEGASGY
GRQLGEGNVAHQDSIDMIHRLGNSTERAAGQTWFHPGYCAQLSDEYIAML
PTLTIMLDNGVALELEPDVYMLRYESESRNPFEGRAIYRCLGISYLDNLD
QMNNNVILGDTVLQKYYVEYDRENDRVGFAKARKCYDPDAVRVAEGVRGA
HHRSRGLLPTWLTRTLVFFSIAVWIFILAVCAQDAFNRYRQRGYSNIPTG
Q*
back to top

mRNA from alignment at tig00000853_pilon:69162..70817-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4076.t1 ID=Ggra4076.t1|Name=Ggra4076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000853_pilon:69162..70817- (Gracilaria gracilis GNS1m male)
ATGGCTGTGGCATCGATAATCTTACTATTTCTCTCCTGCTTAGCGGGCAG
TTTTAGTGCTGAGCTTATCCATCTTTCACTTCGTCGAAAAAACGTTTCCG
CATCTCGTGTGTTCTCGCATCATGGTCGGCCGTGGGCAGCTGGCTCCAAA
GCCCAATTTCCTATCAAGCTCTTCGCACGCAACAAACTTCCAGCTCAGGA
GATGAAAGGAAGCATAGTTCCCGTTGGAGAATACTATCTCACTTTACTGT
TTGGTGGACAACCTATAAACGTGCAGATCGATACCGGCAGTTCAACGATG
GCAGTACCGCTGTTGCAGTGCGTCAATTGCCAACCCAACGATCATCGCTT
TGACATTTCTACCGCTCGTGGTTCAGCAGGGCTTATTTCGTGTGAATCTC
AGACTTGTAGACCGAACAGTTGCGGGGCAATGAGCCAATGCACCAAATGT
TCTTCCTCTAGAGCATGCTGCTCATCTGTTGAGCCCAAGGCGTGTGGGTT
CTTCCTAGCATACGCTGATCAATCTGGTGTGGCTGGTGCACTTGCAGAGG
CCATGGTTGGAATTGGAGGAATGACTGTTCCTCTTGCTTTTGGAGCGGTT
CTCCGGGAAACTGATGATTTTGAAGCCGAGAATGTTGATGGTATCTTTGG
TATGGCGTATAAAGCTCTAGCCTGCAACCCAACATGTGTGCGTCCCTTAT
TTGATACGCTCGTCGCAAATGGCAAAGTTGATCGAGATGTTTTCTCGATC
TGTACTGGGGCGAGTGGCGGAACTCTTGTTCTTGGAGGCTCGAATTCGAA
TCTTTATGAAGGAGAGTTGCAATACGTGCCAATGACCCACCGGGGCATTA
AACTCTTCTATGGTGTAAAGATACATGGTATGAAGGTGAACGATGAAAGC
TTAAGCCTTCCCAGCTTTTCGAAAGGTATCGTTGATTCTGGTACGACTGT
CTTAGTGGTCACGACAAACACATACGGAAGGCTTCGTAGCTACTTTCAGT
CCAATTTCTGCAATGTCCCCGGGTTGTGCGCTGAAGGCGCGAGTGGTTAT
GGGCGGCAGTTAGGGGAGGGCAATGTCGCTCATCAGGACAGCATCGATAT
GATTCATCGACTTGGAAATTCGACCGAAAGAGCCGCAGGCCAGACATGGT
TTCACCCAGGATACTGTGCCCAACTCAGTGACGAGTATATTGCGATGCTC
CCTACACTGACAATTATGTTAGATAACGGTGTAGCTCTCGAACTGGAGCC
AGATGTTTACATGCTGCGGTATGAGTCGGAGTCCAGAAATCCTTTTGAAG
GAAGAGCCATATATAGGTGCCTCGGCATTTCGTACTTGGATAATCTTGAC
CAGATGAATAATAATGTGATTCTTGGCGATACTGTGCTTCAGAAGTACTA
TGTCGAGTATGACCGCGAGAATGACAGAGTTGGCTTTGCGAAAGCGAGAA
AATGTTATGATCCGGATGCGGTACGAGTCGCAGAAGGTGTTCGCGGCGCC
CACCACCGCAGCAGGGGTTTGCTCCCGACATGGCTCACCCGAACCCTGGT
GTTCTTCTCAATTGCCGTGTGGATCTTCATCCTAGCAGTCTGCGCCCAGG
ATGCGTTCAACCGATACAGACAGAGAGGATACAGTAATATCCCAACGGGC
CAATAG
back to top

Coding sequence (CDS) from alignment at tig00000853_pilon:69162..70817-

>Ggra4076.t1 ID=Ggra4076.t1|Name=Ggra4076.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000853_pilon:69162..70817- (Gracilaria gracilis GNS1m male)
ATGGCTGTGGCATCGATAATCTTACTATTTCTCTCCTGCTTAGCGGGCAG
TTTTAGTGCTGAGCTTATCCATCTTTCACTTCGTCGAAAAAACGTTTCCG
CATCTCGTGTGTTCTCGCATCATGGTCGGCCGTGGGCAGCTGGCTCCAAA
GCCCAATTTCCTATCAAGCTCTTCGCACGCAACAAACTTCCAGCTCAGGA
GATGAAAGGAAGCATAGTTCCCGTTGGAGAATACTATCTCACTTTACTGT
TTGGTGGACAACCTATAAACGTGCAGATCGATACCGGCAGTTCAACGATG
GCAGTACCGCTGTTGCAGTGCGTCAATTGCCAACCCAACGATCATCGCTT
TGACATTTCTACCGCTCGTGGTTCAGCAGGGCTTATTTCGTGTGAATCTC
AGACTTGTAGACCGAACAGTTGCGGGGCAATGAGCCAATGCACCAAATGT
TCTTCCTCTAGAGCATGCTGCTCATCTGTTGAGCCCAAGGCGTGTGGGTT
CTTCCTAGCATACGCTGATCAATCTGGTGTGGCTGGTGCACTTGCAGAGG
CCATGGTTGGAATTGGAGGAATGACTGTTCCTCTTGCTTTTGGAGCGGTT
CTCCGGGAAACTGATGATTTTGAAGCCGAGAATGTTGATGGTATCTTTGG
TATGGCGTATAAAGCTCTAGCCTGCAACCCAACATGTGTGCGTCCCTTAT
TTGATACGCTCGTCGCAAATGGCAAAGTTGATCGAGATGTTTTCTCGATC
TGTACTGGGGCGAGTGGCGGAACTCTTGTTCTTGGAGGCTCGAATTCGAA
TCTTTATGAAGGAGAGTTGCAATACGTGCCAATGACCCACCGGGGCATTA
AACTCTTCTATGGTGTAAAGATACATGGTATGAAGGTGAACGATGAAAGC
TTAAGCCTTCCCAGCTTTTCGAAAGGTATCGTTGATTCTGGTACGACTGT
CTTAGTGGTCACGACAAACACATACGGAAGGCTTCGTAGCTACTTTCAGT
CCAATTTCTGCAATGTCCCCGGGTTGTGCGCTGAAGGCGCGAGTGGTTAT
GGGCGGCAGTTAGGGGAGGGCAATGTCGCTCATCAGGACAGCATCGATAT
GATTCATCGACTTGGAAATTCGACCGAAAGAGCCGCAGGCCAGACATGGT
TTCACCCAGGATACTGTGCCCAACTCAGTGACGAGTATATTGCGATGCTC
CCTACACTGACAATTATGTTAGATAACGGTGTAGCTCTCGAACTGGAGCC
AGATGTTTACATGCTGCGGTATGAGTCGGAGTCCAGAAATCCTTTTGAAG
GAAGAGCCATATATAGGTGCCTCGGCATTTCGTACTTGGATAATCTTGAC
CAGATGAATAATAATGTGATTCTTGGCGATACTGTGCTTCAGAAGTACTA
TGTCGAGTATGACCGCGAGAATGACAGAGTTGGCTTTGCGAAAGCGAGAA
AATGTTATGATCCGGATGCGGTACGAGTCGCAGAAGGTGTTCGCGGCGCC
CACCACCGCAGCAGGGGTTTGCTCCCGACATGGCTCACCCGAACCCTGGT
GTTCTTCTCAATTGCCGTGTGGATCTTCATCCTAGCAGTCTGCGCCCAGG
ATGCGTTCAACCGATACAGACAGAGAGGATACAGTAATATCCCAACGGGC
CAATAG
back to top