Ggra4074.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4074.t1
Unique Name	Ggra4074.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:65442..66644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	716544.wcw_1823
PFAMs	DegT_DnrJ_EryC1
Max annot lvl	204428\|Chlamydiae
KEGG rclass	RC00006,RC00230,RC00781
KEGG ko	ko:K12452,ko:K13017
KEGG Reaction	R03391,R03392,R10141
KEGG Pathway	ko00520,map00520
Evalue	6.19e-93
EggNOG OGs	COG0399@1\|root,COG0399@2\|Bacteria,2JFE1@204428\|Chlamydiae
EC	1.17.1.1,2.6.1.98
Description	DegT/DnrJ/EryC1/StrS aminotransferase family
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01005,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4074	Ggra4074	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 65442..66644 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4074.t1.start1	Ggra4074.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 65442..65444 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4074.t1.CDS1	Ggra4074.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 65442..66644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4074.t1.exon1	Ggra4074.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 65442..66644 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4074.t1.stop1	Ggra4074.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 66642..66644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4074.t1	Ggra4074.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 65442..66644 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:65442..66644+
coding sequence from alignment at tig00000853_pilon:65442..66644+

mRNA sequence

>Ggra4074.t1 ID=Ggra4074.t1|Name=Ggra4074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MTHPEQFTVDTEPIPLVDTVAEFTRHGEELINGIRQVAKSGKFILGPQVK
ELETALGLFVQNDDKEHPKVQCIGVSDGTTALQMCLMGLGIGRGHEVITV
PFTWISSAEVIPLVGATPVFADIEADTFVMDAEQVAPLISANTRAVITVS
LYGIIPDLRRIRQVLDEAQEKFGTDIALIEDGAQSFGSIRQGYRSCGSPH
ATLSTTSFFPTKPLSCYGDGGAVFTRDEKLADRLRAIRVHGKVNGSHVMV
GLNARLDTLQAAVLLSKLTFFQESLSARQKAAEVYTDLFREDERIVVPSY
TRITNDDGMKSAYGVYTIQVQQRDEVVKRMKQAGIGCAVYYSKCCHKQPI
FASPQELPVSESMSSKVLSLPIHPYLNVKQQRRIVQVLRTILDDLGISQR
*

spliced messenger RNA

>Ggra4074.t1 ID=Ggra4074.t1|Name=Ggra4074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000853_pilon:65442..66644+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCATCCGGAACAATTCACCGTTGACACCGAACCTATTCCGCTTGT
GGACACGGTGGCAGAATTCACACGACATGGAGAAGAGCTGATAAACGGGA
TTCGACAGGTTGCTAAGTCAGGAAAGTTTATCCTAGGACCACAGGTGAAG
GAGTTAGAAACTGCATTGGGGTTATTTGTACAAAATGATGACAAAGAACA
CCCTAAAGTCCAGTGTATCGGGGTATCAGATGGTACAACTGCACTACAAA
TGTGTTTGATGGGGCTTGGAATCGGAAGAGGTCACGAAGTAATCACTGTT
CCCTTCACCTGGATCTCCTCGGCTGAGGTAATTCCGTTAGTTGGCGCTAC
GCCGGTCTTTGCTGACATAGAAGCTGATACGTTTGTCATGGATGCTGAAC
AGGTTGCACCCCTAATCTCTGCCAATACACGTGCTGTAATAACGGTCTCA
CTGTATGGCATCATTCCAGATCTCAGACGGATTCGCCAGGTTCTCGACGA
AGCCCAGGAAAAGTTCGGGACAGATATTGCGTTGATTGAGGACGGGGCAC
AGAGTTTCGGTTCAATCCGCCAAGGTTATCGCTCTTGCGGTTCTCCGCAT
GCGACTTTAAGCACCACGTCTTTCTTTCCAACAAAACCACTTTCTTGTTA
CGGAGATGGCGGAGCTGTGTTCACTAGAGACGAAAAGCTCGCGGATCGTT
TGAGAGCAATTCGAGTGCACGGCAAAGTCAATGGCTCACACGTTATGGTT
GGTTTGAATGCCCGATTAGACACGCTTCAAGCAGCCGTCTTACTGTCAAA
GCTGACTTTCTTTCAAGAGTCGCTTAGCGCAAGACAGAAGGCAGCCGAAG
TATATACAGATTTGTTTCGAGAAGACGAAAGAATTGTCGTTCCCTCCTAC
ACCCGGATAACTAATGACGATGGTATGAAGTCAGCATATGGCGTTTATAC
CATTCAAGTTCAACAACGAGATGAAGTGGTGAAAAGAATGAAACAGGCCG
GCATAGGATGTGCAGTTTACTATAGCAAGTGCTGCCATAAGCAGCCAATA
TTTGCGAGCCCGCAGGAGCTCCCAGTTTCCGAGAGTATGAGCAGCAAGGT
GCTATCGCTGCCAATTCATCCGTATTTAAATGTGAAACAGCAGCGAAGAA
TTGTTCAGGTACTAAGGACTATTTTGGATGACTTAGGGATATCTCAACGT
TAG

protein sequence of Ggra4074.t1

>Ggra4074.t1 ID=Ggra4074.t1|Name=Ggra4074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MTHPEQFTVDTEPIPLVDTVAEFTRHGEELINGIRQVAKSGKFILGPQVK
ELETALGLFVQNDDKEHPKVQCIGVSDGTTALQMCLMGLGIGRGHEVITV
PFTWISSAEVIPLVGATPVFADIEADTFVMDAEQVAPLISANTRAVITVS
LYGIIPDLRRIRQVLDEAQEKFGTDIALIEDGAQSFGSIRQGYRSCGSPH
ATLSTTSFFPTKPLSCYGDGGAVFTRDEKLADRLRAIRVHGKVNGSHVMV
GLNARLDTLQAAVLLSKLTFFQESLSARQKAAEVYTDLFREDERIVVPSY
TRITNDDGMKSAYGVYTIQVQQRDEVVKRMKQAGIGCAVYYSKCCHKQPI
FASPQELPVSESMSSKVLSLPIHPYLNVKQQRRIVQVLRTILDDLGISQR
*

mRNA from alignment at tig00000853_pilon:65442..66644+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4074.t1 ID=Ggra4074.t1|Name=Ggra4074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000853_pilon:65442..66644+ (Gracilaria gracilis GNS1m male)
ATGACCCATCCGGAACAATTCACCGTTGACACCGAACCTATTCCGCTTGT
GGACACGGTGGCAGAATTCACACGACATGGAGAAGAGCTGATAAACGGGA
TTCGACAGGTTGCTAAGTCAGGAAAGTTTATCCTAGGACCACAGGTGAAG
GAGTTAGAAACTGCATTGGGGTTATTTGTACAAAATGATGACAAAGAACA
CCCTAAAGTCCAGTGTATCGGGGTATCAGATGGTACAACTGCACTACAAA
TGTGTTTGATGGGGCTTGGAATCGGAAGAGGTCACGAAGTAATCACTGTT
CCCTTCACCTGGATCTCCTCGGCTGAGGTAATTCCGTTAGTTGGCGCTAC
GCCGGTCTTTGCTGACATAGAAGCTGATACGTTTGTCATGGATGCTGAAC
AGGTTGCACCCCTAATCTCTGCCAATACACGTGCTGTAATAACGGTCTCA
CTGTATGGCATCATTCCAGATCTCAGACGGATTCGCCAGGTTCTCGACGA
AGCCCAGGAAAAGTTCGGGACAGATATTGCGTTGATTGAGGACGGGGCAC
AGAGTTTCGGTTCAATCCGCCAAGGTTATCGCTCTTGCGGTTCTCCGCAT
GCGACTTTAAGCACCACGTCTTTCTTTCCAACAAAACCACTTTCTTGTTA
CGGAGATGGCGGAGCTGTGTTCACTAGAGACGAAAAGCTCGCGGATCGTT
TGAGAGCAATTCGAGTGCACGGCAAAGTCAATGGCTCACACGTTATGGTT
GGTTTGAATGCCCGATTAGACACGCTTCAAGCAGCCGTCTTACTGTCAAA
GCTGACTTTCTTTCAAGAGTCGCTTAGCGCAAGACAGAAGGCAGCCGAAG
TATATACAGATTTGTTTCGAGAAGACGAAAGAATTGTCGTTCCCTCCTAC
ACCCGGATAACTAATGACGATGGTATGAAGTCAGCATATGGCGTTTATAC
CATTCAAGTTCAACAACGAGATGAAGTGGTGAAAAGAATGAAACAGGCCG
GCATAGGATGTGCAGTTTACTATAGCAAGTGCTGCCATAAGCAGCCAATA
TTTGCGAGCCCGCAGGAGCTCCCAGTTTCCGAGAGTATGAGCAGCAAGGT
GCTATCGCTGCCAATTCATCCGTATTTAAATGTGAAACAGCAGCGAAGAA
TTGTTCAGGTACTAAGGACTATTTTGGATGACTTAGGGATATCTCAACGT
TAG

Coding sequence (CDS) from alignment at tig00000853_pilon:65442..66644+

>Ggra4074.t1 ID=Ggra4074.t1|Name=Ggra4074.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000853_pilon:65442..66644+ (Gracilaria gracilis GNS1m male)
ATGACCCATCCGGAACAATTCACCGTTGACACCGAACCTATTCCGCTTGT
GGACACGGTGGCAGAATTCACACGACATGGAGAAGAGCTGATAAACGGGA
TTCGACAGGTTGCTAAGTCAGGAAAGTTTATCCTAGGACCACAGGTGAAG
GAGTTAGAAACTGCATTGGGGTTATTTGTACAAAATGATGACAAAGAACA
CCCTAAAGTCCAGTGTATCGGGGTATCAGATGGTACAACTGCACTACAAA
TGTGTTTGATGGGGCTTGGAATCGGAAGAGGTCACGAAGTAATCACTGTT
CCCTTCACCTGGATCTCCTCGGCTGAGGTAATTCCGTTAGTTGGCGCTAC
GCCGGTCTTTGCTGACATAGAAGCTGATACGTTTGTCATGGATGCTGAAC
AGGTTGCACCCCTAATCTCTGCCAATACACGTGCTGTAATAACGGTCTCA
CTGTATGGCATCATTCCAGATCTCAGACGGATTCGCCAGGTTCTCGACGA
AGCCCAGGAAAAGTTCGGGACAGATATTGCGTTGATTGAGGACGGGGCAC
AGAGTTTCGGTTCAATCCGCCAAGGTTATCGCTCTTGCGGTTCTCCGCAT
GCGACTTTAAGCACCACGTCTTTCTTTCCAACAAAACCACTTTCTTGTTA
CGGAGATGGCGGAGCTGTGTTCACTAGAGACGAAAAGCTCGCGGATCGTT
TGAGAGCAATTCGAGTGCACGGCAAAGTCAATGGCTCACACGTTATGGTT
GGTTTGAATGCCCGATTAGACACGCTTCAAGCAGCCGTCTTACTGTCAAA
GCTGACTTTCTTTCAAGAGTCGCTTAGCGCAAGACAGAAGGCAGCCGAAG
TATATACAGATTTGTTTCGAGAAGACGAAAGAATTGTCGTTCCCTCCTAC
ACCCGGATAACTAATGACGATGGTATGAAGTCAGCATATGGCGTTTATAC
CATTCAAGTTCAACAACGAGATGAAGTGGTGAAAAGAATGAAACAGGCCG
GCATAGGATGTGCAGTTTACTATAGCAAGTGCTGCCATAAGCAGCCAATA
TTTGCGAGCCCGCAGGAGCTCCCAGTTTCCGAGAGTATGAGCAGCAAGGT
GCTATCGCTGCCAATTCATCCGTATTTAAATGTGAAACAGCAGCGAAGAA
TTGTTCAGGTACTAAGGACTATTTTGGATGACTTAGGGATATCTCAACGT
TAG