Ggra4066.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4066.t1
Unique NameGgra4066.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:47197..48630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706258.1
Preferred nameRIB3
PFAMsDHBP_synthase,GTP_cyclohydro2
Max annot lvl2759|Eukaryota
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02858,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110
KEGG ModuleM00125,M00840
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009060,GO:0009110,GO:0009231,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0015980,GO:0016020,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0031012,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0055114,GO:0062039,GO:0062040,GO:0070013,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.37e-203
EggNOG OGsCOG0807@1|root,KOG1284@2759|Eukaryota
EC3.5.4.25,4.1.99.12
Description3,4-dihydroxy-2-butanone-4-phosphate synthase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4066Ggra4066Gracilaria gracilis GNS1m malegenetig00000853_pilon 47197..48630 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4066.t1.start1Ggra4066.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 47197..47199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4066.t1.CDS1Ggra4066.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 47197..48630 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4066.t1.exon1Ggra4066.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 47197..48630 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4066.t1.stop1Ggra4066.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 48628..48630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4066.t1Ggra4066.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 47197..48630 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4066.t1 ID=Ggra4066.t1|Name=Ggra4066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MAFVHTPSPLLNRSSLPSTRASRAASRFTVKAVAPPQRRTASFSGWLPES
PPSNTASLLLSDDGWCFGRESVEAALEAMAQGKFIVVTDDENRENEGDLI
IAADKVTPEAIAFMVRYTSGVICCAMEGHDLDRLQLQQMVANNTDPKNTA
FTITCDFKDGTSTGISAADRAKTLRALADPNSHPDQFHRPGHIFPLRYRE
GGVLRRAGHTEASVDFSRLAGSAPVGVLSEIVNDSDGSMARLPQLRKFAK
EHDLVLTSIADLVKYRRMQEKLVTRIAGTPARLPTRYGTFDAHAYRSVLD
DVDHLALVVGGGDDPQNPNFEGPVLVRVHSECCTGDVFGSLRCDCGPQLD
FAMREISAAGRGVLVYLRGQEGRGIGLGHKMRAYALQDQGRDTVEANEDL
GFPVDSREYGIGAQILTDLNVKEIILMTNNPAKYSGLTGYGLSIVERLPV
QVSPNPENLAYLTTKKEKMGHWLNITS*
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spliced messenger RNA

>Ggra4066.t1 ID=Ggra4066.t1|Name=Ggra4066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000853_pilon:47197..48630+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTTCACACCCCGTCGCCTCTTCTCAACCGCTCCTCTCTCCC
ATCCACTCGTGCATCTCGCGCTGCTTCGCGCTTCACAGTCAAAGCCGTCG
CCCCTCCTCAGCGAAGGACAGCCTCCTTCAGTGGCTGGCTGCCCGAGTCC
CCTCCGTCAAACACTGCCAGCCTGCTACTCTCTGACGATGGCTGGTGCTT
CGGTCGCGAGTCCGTCGAGGCGGCGCTGGAAGCCATGGCTCAAGGCAAGT
TCATCGTTGTGACAGACGACGAAAATCGCGAGAACGAGGGTGATCTCATC
ATCGCAGCCGACAAGGTCACTCCGGAGGCCATTGCATTCATGGTCCGGTA
CACCTCTGGCGTTATCTGCTGCGCCATGGAAGGCCATGACCTCGATCGCC
TCCAACTTCAACAGATGGTTGCTAACAACACCGACCCAAAGAATACAGCC
TTCACCATTACCTGCGACTTCAAAGACGGTACCTCGACTGGTATCTCTGC
TGCTGATCGCGCAAAGACGCTCCGTGCCCTAGCCGATCCAAATTCGCACC
CCGACCAATTCCACCGCCCGGGCCACATCTTCCCGCTGCGCTACCGGGAA
GGCGGAGTGCTCAGGCGCGCTGGACACACGGAGGCTTCCGTTGATTTTTC
GCGCTTGGCTGGTTCCGCTCCGGTCGGTGTCCTCAGCGAGATTGTCAATG
ACAGTGACGGATCTATGGCCCGTCTCCCGCAATTACGCAAGTTTGCGAAG
GAACATGATTTAGTCCTCACTTCCATTGCCGATCTCGTCAAGTACCGTCG
TATGCAAGAGAAGCTTGTGACTCGTATCGCAGGTACTCCAGCACGTTTAC
CTACCCGCTACGGGACATTTGACGCGCATGCCTACCGTTCAGTGCTCGAC
GATGTTGACCATCTTGCCCTTGTCGTGGGAGGCGGCGATGATCCGCAAAA
TCCAAACTTTGAAGGCCCTGTACTCGTCAGAGTGCATTCTGAGTGCTGTA
CTGGGGATGTTTTCGGTTCCTTGCGGTGCGATTGCGGCCCTCAGCTGGAT
TTCGCTATGCGTGAAATTTCTGCAGCAGGTCGTGGCGTTCTTGTGTACCT
ACGTGGCCAGGAAGGCCGTGGTATTGGCCTGGGGCACAAGATGAGGGCAT
ATGCGTTGCAAGATCAAGGTAGAGACACAGTTGAGGCCAACGAAGATCTA
GGTTTCCCTGTTGACAGCAGAGAGTACGGCATCGGTGCGCAGATTCTCAC
TGATCTTAACGTCAAGGAAATAATTCTAATGACTAATAATCCAGCAAAGT
ACTCTGGTCTCACTGGGTACGGACTTTCCATTGTTGAGAGATTACCAGTT
CAGGTGTCGCCAAATCCAGAGAACCTGGCATATCTCACCACGAAGAAAGA
AAAGATGGGACATTGGCTGAATATAACTTCCTAG
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protein sequence of Ggra4066.t1

>Ggra4066.t1 ID=Ggra4066.t1|Name=Ggra4066.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MAFVHTPSPLLNRSSLPSTRASRAASRFTVKAVAPPQRRTASFSGWLPES
PPSNTASLLLSDDGWCFGRESVEAALEAMAQGKFIVVTDDENRENEGDLI
IAADKVTPEAIAFMVRYTSGVICCAMEGHDLDRLQLQQMVANNTDPKNTA
FTITCDFKDGTSTGISAADRAKTLRALADPNSHPDQFHRPGHIFPLRYRE
GGVLRRAGHTEASVDFSRLAGSAPVGVLSEIVNDSDGSMARLPQLRKFAK
EHDLVLTSIADLVKYRRMQEKLVTRIAGTPARLPTRYGTFDAHAYRSVLD
DVDHLALVVGGGDDPQNPNFEGPVLVRVHSECCTGDVFGSLRCDCGPQLD
FAMREISAAGRGVLVYLRGQEGRGIGLGHKMRAYALQDQGRDTVEANEDL
GFPVDSREYGIGAQILTDLNVKEIILMTNNPAKYSGLTGYGLSIVERLPV
QVSPNPENLAYLTTKKEKMGHWLNITS*
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mRNA from alignment at tig00000853_pilon:47197..48630+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4066.t1 ID=Ggra4066.t1|Name=Ggra4066.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000853_pilon:47197..48630+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTCACACCCCGTCGCCTCTTCTCAACCGCTCCTCTCTCCC
ATCCACTCGTGCATCTCGCGCTGCTTCGCGCTTCACAGTCAAAGCCGTCG
CCCCTCCTCAGCGAAGGACAGCCTCCTTCAGTGGCTGGCTGCCCGAGTCC
CCTCCGTCAAACACTGCCAGCCTGCTACTCTCTGACGATGGCTGGTGCTT
CGGTCGCGAGTCCGTCGAGGCGGCGCTGGAAGCCATGGCTCAAGGCAAGT
TCATCGTTGTGACAGACGACGAAAATCGCGAGAACGAGGGTGATCTCATC
ATCGCAGCCGACAAGGTCACTCCGGAGGCCATTGCATTCATGGTCCGGTA
CACCTCTGGCGTTATCTGCTGCGCCATGGAAGGCCATGACCTCGATCGCC
TCCAACTTCAACAGATGGTTGCTAACAACACCGACCCAAAGAATACAGCC
TTCACCATTACCTGCGACTTCAAAGACGGTACCTCGACTGGTATCTCTGC
TGCTGATCGCGCAAAGACGCTCCGTGCCCTAGCCGATCCAAATTCGCACC
CCGACCAATTCCACCGCCCGGGCCACATCTTCCCGCTGCGCTACCGGGAA
GGCGGAGTGCTCAGGCGCGCTGGACACACGGAGGCTTCCGTTGATTTTTC
GCGCTTGGCTGGTTCCGCTCCGGTCGGTGTCCTCAGCGAGATTGTCAATG
ACAGTGACGGATCTATGGCCCGTCTCCCGCAATTACGCAAGTTTGCGAAG
GAACATGATTTAGTCCTCACTTCCATTGCCGATCTCGTCAAGTACCGTCG
TATGCAAGAGAAGCTTGTGACTCGTATCGCAGGTACTCCAGCACGTTTAC
CTACCCGCTACGGGACATTTGACGCGCATGCCTACCGTTCAGTGCTCGAC
GATGTTGACCATCTTGCCCTTGTCGTGGGAGGCGGCGATGATCCGCAAAA
TCCAAACTTTGAAGGCCCTGTACTCGTCAGAGTGCATTCTGAGTGCTGTA
CTGGGGATGTTTTCGGTTCCTTGCGGTGCGATTGCGGCCCTCAGCTGGAT
TTCGCTATGCGTGAAATTTCTGCAGCAGGTCGTGGCGTTCTTGTGTACCT
ACGTGGCCAGGAAGGCCGTGGTATTGGCCTGGGGCACAAGATGAGGGCAT
ATGCGTTGCAAGATCAAGGTAGAGACACAGTTGAGGCCAACGAAGATCTA
GGTTTCCCTGTTGACAGCAGAGAGTACGGCATCGGTGCGCAGATTCTCAC
TGATCTTAACGTCAAGGAAATAATTCTAATGACTAATAATCCAGCAAAGT
ACTCTGGTCTCACTGGGTACGGACTTTCCATTGTTGAGAGATTACCAGTT
CAGGTGTCGCCAAATCCAGAGAACCTGGCATATCTCACCACGAAGAAAGA
AAAGATGGGACATTGGCTGAATATAACTTCCTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:47197..48630+

>Ggra4066.t1 ID=Ggra4066.t1|Name=Ggra4066.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000853_pilon:47197..48630+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTCACACCCCGTCGCCTCTTCTCAACCGCTCCTCTCTCCC
ATCCACTCGTGCATCTCGCGCTGCTTCGCGCTTCACAGTCAAAGCCGTCG
CCCCTCCTCAGCGAAGGACAGCCTCCTTCAGTGGCTGGCTGCCCGAGTCC
CCTCCGTCAAACACTGCCAGCCTGCTACTCTCTGACGATGGCTGGTGCTT
CGGTCGCGAGTCCGTCGAGGCGGCGCTGGAAGCCATGGCTCAAGGCAAGT
TCATCGTTGTGACAGACGACGAAAATCGCGAGAACGAGGGTGATCTCATC
ATCGCAGCCGACAAGGTCACTCCGGAGGCCATTGCATTCATGGTCCGGTA
CACCTCTGGCGTTATCTGCTGCGCCATGGAAGGCCATGACCTCGATCGCC
TCCAACTTCAACAGATGGTTGCTAACAACACCGACCCAAAGAATACAGCC
TTCACCATTACCTGCGACTTCAAAGACGGTACCTCGACTGGTATCTCTGC
TGCTGATCGCGCAAAGACGCTCCGTGCCCTAGCCGATCCAAATTCGCACC
CCGACCAATTCCACCGCCCGGGCCACATCTTCCCGCTGCGCTACCGGGAA
GGCGGAGTGCTCAGGCGCGCTGGACACACGGAGGCTTCCGTTGATTTTTC
GCGCTTGGCTGGTTCCGCTCCGGTCGGTGTCCTCAGCGAGATTGTCAATG
ACAGTGACGGATCTATGGCCCGTCTCCCGCAATTACGCAAGTTTGCGAAG
GAACATGATTTAGTCCTCACTTCCATTGCCGATCTCGTCAAGTACCGTCG
TATGCAAGAGAAGCTTGTGACTCGTATCGCAGGTACTCCAGCACGTTTAC
CTACCCGCTACGGGACATTTGACGCGCATGCCTACCGTTCAGTGCTCGAC
GATGTTGACCATCTTGCCCTTGTCGTGGGAGGCGGCGATGATCCGCAAAA
TCCAAACTTTGAAGGCCCTGTACTCGTCAGAGTGCATTCTGAGTGCTGTA
CTGGGGATGTTTTCGGTTCCTTGCGGTGCGATTGCGGCCCTCAGCTGGAT
TTCGCTATGCGTGAAATTTCTGCAGCAGGTCGTGGCGTTCTTGTGTACCT
ACGTGGCCAGGAAGGCCGTGGTATTGGCCTGGGGCACAAGATGAGGGCAT
ATGCGTTGCAAGATCAAGGTAGAGACACAGTTGAGGCCAACGAAGATCTA
GGTTTCCCTGTTGACAGCAGAGAGTACGGCATCGGTGCGCAGATTCTCAC
TGATCTTAACGTCAAGGAAATAATTCTAATGACTAATAATCCAGCAAAGT
ACTCTGGTCTCACTGGGTACGGACTTTCCATTGTTGAGAGATTACCAGTT
CAGGTGTCGCCAAATCCAGAGAACCTGGCATATCTCACCACGAAGAAAGA
AAAGATGGGACATTGGCTGAATATAACTTCCTAG
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