Ggra4060.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4060.t1
Unique NameGgra4060.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000173_piloncontigtig00000173_pilon:152289..153653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LMF4
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue5.66e-20
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4060Ggra4060Gracilaria gracilis GNS1m malegenetig00000173_pilon 152289..153653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4060.t1.stop1Ggra4060.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000173_pilon 152289..152291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4060.t1.CDS1Ggra4060.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000173_pilon 152289..153653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4060.t1.exon1Ggra4060.t1.exon1Gracilaria gracilis GNS1m maleexontig00000173_pilon 152289..153653 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4060.t1.start1Ggra4060.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000173_pilon 153651..153653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4060.t1Ggra4060.t1Gracilaria gracilis GNS1m malepolypeptidetig00000173_pilon 152289..153653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4060.t1 ID=Ggra4060.t1|Name=Ggra4060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MSQLAVLVALALLCYMLPVAHSHGAMVLPRQRGLLGKTRFVPTTLDENAP
KDYYPHFPSGVKTDTPGIGKLSQEMAAGSRGWYPYDPYDPNFVWRAGVCG
DTVTGDQQHLQGGKFYNNGKIVGRYRQGATIGIGTSIVAHHNGFMEAHLC
DMSKCPGGDISKECFLAGACIQLNRAVNPECDSGMSMRCGPIDRKYPGRW
YLPCSYIDSPAGFDSYPPEYATFQLPKDFFCEHCVLQWYWAAANNCNPPG
VLDYFDGPDRPSWQQCPGQGDARGGVTRNKKPCGGTQYFAEEYYQCADIQ
VVPLGGGRSRSAPPAVSAEELELGASPSASPEPLLQQNEGRNYPRMRQFG
DGVFSALMFWADSIPSRALQDDSIVDISAYKRVGVEAVVTGSVGKVEFFV
DGEMVDMKTSAPYFMYGANGAVPGYWDDVPVNRPLTIAAYANGEMAEVTV
TFVR*
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spliced messenger RNA

>Ggra4060.t1 ID=Ggra4060.t1|Name=Ggra4060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000173_pilon:152289..153653- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAGCTCGCTGTGCTTGTTGCCCTCGCGCTGTTGTGCTACATGCT
GCCCGTCGCCCACTCGCATGGCGCCATGGTGCTGCCCCGCCAGCGCGGCC
TGCTCGGCAAGACGCGATTCGTGCCCACCACGCTTGACGAAAATGCGCCC
AAGGACTACTATCCGCACTTTCCGTCCGGCGTCAAGACCGACACGCCCGG
CATCGGTAAACTGTCGCAGGAGATGGCCGCCGGCTCGCGCGGCTGGTACC
CGTACGACCCGTACGACCCCAACTTTGTGTGGCGCGCCGGCGTGTGCGGC
GACACCGTCACCGGCGACCAGCAGCACCTCCAGGGCGGCAAGTTCTACAA
CAACGGCAAGATTGTGGGCCGCTACCGTCAGGGCGCCACCATCGGCATCG
GCACCTCCATCGTCGCGCACCACAACGGCTTCATGGAGGCGCATCTGTGC
GACATGAGCAAGTGCCCCGGCGGCGACATCTCCAAGGAGTGCTTCCTGGC
CGGCGCCTGCATCCAGCTGAATCGCGCGGTGAACCCCGAGTGCGACTCGG
GCATGTCCATGAGGTGCGGCCCCATCGACCGCAAGTACCCCGGCCGCTGG
TACCTGCCGTGCTCGTACATCGACTCGCCGGCCGGCTTCGACTCGTACCC
GCCCGAGTACGCCACGTTCCAGCTTCCCAAGGACTTTTTCTGCGAGCACT
GCGTGCTGCAGTGGTACTGGGCGGCCGCCAACAACTGCAACCCGCCGGGC
GTGTTGGACTACTTTGACGGCCCGGACCGCCCCAGCTGGCAGCAGTGCCC
CGGGCAGGGCGACGCGCGCGGCGGCGTGACGCGCAACAAGAAACCGTGCG
GCGGCACGCAGTACTTTGCCGAGGAGTACTACCAGTGCGCCGACATCCAG
GTGGTGCCGCTTGGCGGCGGGCGCTCGCGCAGCGCGCCGCCCGCCGTGTC
GGCGGAGGAGCTGGAGCTGGGCGCGTCGCCGTCGGCGTCGCCAGAGCCGC
TGCTGCAGCAGAACGAGGGGCGCAACTACCCGCGCATGAGGCAGTTTGGC
GACGGCGTGTTCAGCGCGCTCATGTTTTGGGCGGATAGCATCCCCAGCCG
CGCGCTGCAGGACGACAGCATTGTGGACATCAGCGCGTACAAGCGCGTGG
GCGTGGAGGCGGTGGTGACCGGCTCGGTGGGCAAGGTGGAGTTCTTTGTG
GACGGCGAGATGGTGGACATGAAGACGTCCGCGCCGTACTTTATGTACGG
CGCCAACGGCGCCGTGCCCGGCTACTGGGACGACGTGCCGGTGAACAGGC
CGCTGACGATTGCGGCGTACGCCAACGGCGAGATGGCCGAGGTGACGGTG
ACGTTTGTGAGGTAA
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protein sequence of Ggra4060.t1

>Ggra4060.t1 ID=Ggra4060.t1|Name=Ggra4060.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MSQLAVLVALALLCYMLPVAHSHGAMVLPRQRGLLGKTRFVPTTLDENAP
KDYYPHFPSGVKTDTPGIGKLSQEMAAGSRGWYPYDPYDPNFVWRAGVCG
DTVTGDQQHLQGGKFYNNGKIVGRYRQGATIGIGTSIVAHHNGFMEAHLC
DMSKCPGGDISKECFLAGACIQLNRAVNPECDSGMSMRCGPIDRKYPGRW
YLPCSYIDSPAGFDSYPPEYATFQLPKDFFCEHCVLQWYWAAANNCNPPG
VLDYFDGPDRPSWQQCPGQGDARGGVTRNKKPCGGTQYFAEEYYQCADIQ
VVPLGGGRSRSAPPAVSAEELELGASPSASPEPLLQQNEGRNYPRMRQFG
DGVFSALMFWADSIPSRALQDDSIVDISAYKRVGVEAVVTGSVGKVEFFV
DGEMVDMKTSAPYFMYGANGAVPGYWDDVPVNRPLTIAAYANGEMAEVTV
TFVR*
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mRNA from alignment at tig00000173_pilon:152289..153653-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4060.t1 ID=Ggra4060.t1|Name=Ggra4060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000173_pilon:152289..153653- (Gracilaria gracilis GNS1m male)
ATGTCTCAGCTCGCTGTGCTTGTTGCCCTCGCGCTGTTGTGCTACATGCT
GCCCGTCGCCCACTCGCATGGCGCCATGGTGCTGCCCCGCCAGCGCGGCC
TGCTCGGCAAGACGCGATTCGTGCCCACCACGCTTGACGAAAATGCGCCC
AAGGACTACTATCCGCACTTTCCGTCCGGCGTCAAGACCGACACGCCCGG
CATCGGTAAACTGTCGCAGGAGATGGCCGCCGGCTCGCGCGGCTGGTACC
CGTACGACCCGTACGACCCCAACTTTGTGTGGCGCGCCGGCGTGTGCGGC
GACACCGTCACCGGCGACCAGCAGCACCTCCAGGGCGGCAAGTTCTACAA
CAACGGCAAGATTGTGGGCCGCTACCGTCAGGGCGCCACCATCGGCATCG
GCACCTCCATCGTCGCGCACCACAACGGCTTCATGGAGGCGCATCTGTGC
GACATGAGCAAGTGCCCCGGCGGCGACATCTCCAAGGAGTGCTTCCTGGC
CGGCGCCTGCATCCAGCTGAATCGCGCGGTGAACCCCGAGTGCGACTCGG
GCATGTCCATGAGGTGCGGCCCCATCGACCGCAAGTACCCCGGCCGCTGG
TACCTGCCGTGCTCGTACATCGACTCGCCGGCCGGCTTCGACTCGTACCC
GCCCGAGTACGCCACGTTCCAGCTTCCCAAGGACTTTTTCTGCGAGCACT
GCGTGCTGCAGTGGTACTGGGCGGCCGCCAACAACTGCAACCCGCCGGGC
GTGTTGGACTACTTTGACGGCCCGGACCGCCCCAGCTGGCAGCAGTGCCC
CGGGCAGGGCGACGCGCGCGGCGGCGTGACGCGCAACAAGAAACCGTGCG
GCGGCACGCAGTACTTTGCCGAGGAGTACTACCAGTGCGCCGACATCCAG
GTGGTGCCGCTTGGCGGCGGGCGCTCGCGCAGCGCGCCGCCCGCCGTGTC
GGCGGAGGAGCTGGAGCTGGGCGCGTCGCCGTCGGCGTCGCCAGAGCCGC
TGCTGCAGCAGAACGAGGGGCGCAACTACCCGCGCATGAGGCAGTTTGGC
GACGGCGTGTTCAGCGCGCTCATGTTTTGGGCGGATAGCATCCCCAGCCG
CGCGCTGCAGGACGACAGCATTGTGGACATCAGCGCGTACAAGCGCGTGG
GCGTGGAGGCGGTGGTGACCGGCTCGGTGGGCAAGGTGGAGTTCTTTGTG
GACGGCGAGATGGTGGACATGAAGACGTCCGCGCCGTACTTTATGTACGG
CGCCAACGGCGCCGTGCCCGGCTACTGGGACGACGTGCCGGTGAACAGGC
CGCTGACGATTGCGGCGTACGCCAACGGCGAGATGGCCGAGGTGACGGTG
ACGTTTGTGAGGTAA
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Coding sequence (CDS) from alignment at tig00000173_pilon:152289..153653-

>Ggra4060.t1 ID=Ggra4060.t1|Name=Ggra4060.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000173_pilon:152289..153653- (Gracilaria gracilis GNS1m male)
ATGTCTCAGCTCGCTGTGCTTGTTGCCCTCGCGCTGTTGTGCTACATGCT
GCCCGTCGCCCACTCGCATGGCGCCATGGTGCTGCCCCGCCAGCGCGGCC
TGCTCGGCAAGACGCGATTCGTGCCCACCACGCTTGACGAAAATGCGCCC
AAGGACTACTATCCGCACTTTCCGTCCGGCGTCAAGACCGACACGCCCGG
CATCGGTAAACTGTCGCAGGAGATGGCCGCCGGCTCGCGCGGCTGGTACC
CGTACGACCCGTACGACCCCAACTTTGTGTGGCGCGCCGGCGTGTGCGGC
GACACCGTCACCGGCGACCAGCAGCACCTCCAGGGCGGCAAGTTCTACAA
CAACGGCAAGATTGTGGGCCGCTACCGTCAGGGCGCCACCATCGGCATCG
GCACCTCCATCGTCGCGCACCACAACGGCTTCATGGAGGCGCATCTGTGC
GACATGAGCAAGTGCCCCGGCGGCGACATCTCCAAGGAGTGCTTCCTGGC
CGGCGCCTGCATCCAGCTGAATCGCGCGGTGAACCCCGAGTGCGACTCGG
GCATGTCCATGAGGTGCGGCCCCATCGACCGCAAGTACCCCGGCCGCTGG
TACCTGCCGTGCTCGTACATCGACTCGCCGGCCGGCTTCGACTCGTACCC
GCCCGAGTACGCCACGTTCCAGCTTCCCAAGGACTTTTTCTGCGAGCACT
GCGTGCTGCAGTGGTACTGGGCGGCCGCCAACAACTGCAACCCGCCGGGC
GTGTTGGACTACTTTGACGGCCCGGACCGCCCCAGCTGGCAGCAGTGCCC
CGGGCAGGGCGACGCGCGCGGCGGCGTGACGCGCAACAAGAAACCGTGCG
GCGGCACGCAGTACTTTGCCGAGGAGTACTACCAGTGCGCCGACATCCAG
GTGGTGCCGCTTGGCGGCGGGCGCTCGCGCAGCGCGCCGCCCGCCGTGTC
GGCGGAGGAGCTGGAGCTGGGCGCGTCGCCGTCGGCGTCGCCAGAGCCGC
TGCTGCAGCAGAACGAGGGGCGCAACTACCCGCGCATGAGGCAGTTTGGC
GACGGCGTGTTCAGCGCGCTCATGTTTTGGGCGGATAGCATCCCCAGCCG
CGCGCTGCAGGACGACAGCATTGTGGACATCAGCGCGTACAAGCGCGTGG
GCGTGGAGGCGGTGGTGACCGGCTCGGTGGGCAAGGTGGAGTTCTTTGTG
GACGGCGAGATGGTGGACATGAAGACGTCCGCGCCGTACTTTATGTACGG
CGCCAACGGCGCCGTGCCCGGCTACTGGGACGACGTGCCGGTGAACAGGC
CGCTGACGATTGCGGCGTACGCCAACGGCGAGATGGCCGAGGTGACGGTG
ACGTTTGTGAGGTAA
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