Ggra4057.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4057.t1
Unique NameGgra4057.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000173_piloncontigtig00000173_pilon:52972..53822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4057Ggra4057Gracilaria gracilis GNS1m malegenetig00000173_pilon 52972..53822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1Ggra4057.t1Gracilaria gracilis GNS1m malepolypeptidetig00000173_pilon 52972..53822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1.start1Ggra4057.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000173_pilon 52972..52974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1.CDS1Ggra4057.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000173_pilon 52972..53671 +
Ggra4057.t1.CDS2Ggra4057.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000173_pilon 53797..53822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1.exon1Ggra4057.t1.exon1Gracilaria gracilis GNS1m maleexontig00000173_pilon 52972..53671 +
Ggra4057.t1.exon2Ggra4057.t1.exon2Gracilaria gracilis GNS1m maleexontig00000173_pilon 53797..53822 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1.intron1Ggra4057.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000173_pilon 53672..53796 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4057.t1.stop1Ggra4057.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000173_pilon 53820..53822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4057.t1 ID=Ggra4057.t1|Name=Ggra4057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MIIKSVTLEVVNLISDPKIFTKSPGQIVEEVTTILPSKDQTGSFSLMNEA
LYVSRSGTIAAYIAEHLAILKKQVIANAPGIQSEAFTVNFTIQGLIPYQR
FGTQATTMLLNSQPTTINEFQLNLKEYERLLQWQSQQVSSSPSGCSFKKR
YSGRGHGRSRGRGQGHRYQYRQVTEMLSNISNKIEEMQSDNKARKLRGRA
RANAAHGQPEISEETLRDLMEVADSADVDAEPQLGNTSDQN*
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spliced messenger RNA

>Ggra4057.t1 ID=Ggra4057.t1|Name=Ggra4057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000173_pilon:52972..53822+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATTAAGAGCGTAACTCTAGAAGTGGTCAACCTCATTTCTGATCC
AAAAATCTTCACCAAATCCCCTGGTCAAATTGTTGAAGAAGTTACGACCA
TTCTCCCCAGCAAAGACCAAACTGGTTCGTTTTCCCTAATGAACGAAGCA
CTATATGTTTCTCGCTCCGGAACCATCGCCGCCTACATTGCGGAGCACTT
GGCCATTCTAAAGAAACAAGTCATAGCTAATGCCCCAGGTATTCAATCAG
AAGCATTCACCGTCAACTTCACCATCCAAGGACTAATACCGTACCAACGA
TTTGGAACTCAAGCCACAACTATGCTATTGAACTCCCAGCCGACTACAAT
CAATGAATTTCAGCTTAACCTCAAAGAATATGAGCGTTTACTACAATGGC
AATCACAGCAAGTCTCTTCTTCGCCTTCCGGTTGCTCTTTCAAAAAGCGT
TATAGTGGCAGGGGACATGGTCGTAGCCGTGGCAGAGGCCAAGGCCACCG
TTACCAATACAGGCAAGTGACTGAAATGCTGTCAAATATATCCAACAAAA
TAGAGGAGATGCAGTCCGATAACAAAGCTCGCAAGCTTCGCGGCAGGGCA
CGTGCTAATGCCGCTCATGGGCAACCCGAAATATCGGAAGAGACCCTCCG
GGATCTCATGGAAGTGGCAGACTCGGCAGATGTGGATGCAGAACCGCAGC
TGGGGAACACCTCTGATCAGAACTAA
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protein sequence of Ggra4057.t1

>Ggra4057.t1 ID=Ggra4057.t1|Name=Ggra4057.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MIIKSVTLEVVNLISDPKIFTKSPGQIVEEVTTILPSKDQTGSFSLMNEA
LYVSRSGTIAAYIAEHLAILKKQVIANAPGIQSEAFTVNFTIQGLIPYQR
FGTQATTMLLNSQPTTINEFQLNLKEYERLLQWQSQQVSSSPSGCSFKKR
YSGRGHGRSRGRGQGHRYQYRQVTEMLSNISNKIEEMQSDNKARKLRGRA
RANAAHGQPEISEETLRDLMEVADSADVDAEPQLGNTSDQN*
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mRNA from alignment at tig00000173_pilon:52972..53822+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4057.t1 ID=Ggra4057.t1|Name=Ggra4057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=851bp|location=Sequence derived from alignment at tig00000173_pilon:52972..53822+ (Gracilaria gracilis GNS1m male)
ATGATCATTAAGAGCGTAACTCTAGAAGTGGTCAACCTCATTTCTGATCC
AAAAATCTTCACCAAATCCCCTGGTCAAATTGTTGAAGAAGTTACGACCA
TTCTCCCCAGCAAAGACCAAACTGGTTCGTTTTCCCTAATGAACGAAGCA
CTATATGTTTCTCGCTCCGGAACCATCGCCGCCTACATTGCGGAGCACTT
GGCCATTCTAAAGAAACAAGTCATAGCTAATGCCCCAGGTATTCAATCAG
AAGCATTCACCGTCAACTTCACCATCCAAGGACTAATACCGTACCAACGA
TTTGGAACTCAAGCCACAACTATGCTATTGAACTCCCAGCCGACTACAAT
CAATGAATTTCAGCTTAACCTCAAAGAATATGAGCGTTTACTACAATGGC
AATCACAGCAAGTCTCTTCTTCGCCTTCCGGTTGCTCTTTCAAAAAGCGT
TATAGTGGCAGGGGACATGGTCGTAGCCGTGGCAGAGGCCAAGGCCACCG
TTACCAATACAGGCAAGTGACTGAAATGCTGTCAAATATATCCAACAAAA
TAGAGGAGATGCAGTCCGATAACAAAGCTCGCAAGCTTCGCGGCAGGGCA
CGTGCTAATGCCGCTCATGGGCAACCCGAAATATCGGAAGAGACCCTCCG
GGATCTCATGGAAGTGGCAGACTCGGCAGATGTGGATGCAGAACCGCAGC
GTAAGTACTTGCTTGACTCAGGTGCCCATCGAACAATCATCAATCATTCC
GTCCCCAACACGACTAACCTGCCCCATTCTATCGTCTCAATAACGGCTTC
GGATACACCGCTCCACACAACACAGTGGGGAACACCTCTGATCAGAACTA
A
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Coding sequence (CDS) from alignment at tig00000173_pilon:52972..53822+

>Ggra4057.t1 ID=Ggra4057.t1|Name=Ggra4057.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000173_pilon:52972..53822+ (Gracilaria gracilis GNS1m male)
ATGATCATTAAGAGCGTAACTCTAGAAGTGGTCAACCTCATTTCTGATCC
AAAAATCTTCACCAAATCCCCTGGTCAAATTGTTGAAGAAGTTACGACCA
TTCTCCCCAGCAAAGACCAAACTGGTTCGTTTTCCCTAATGAACGAAGCA
CTATATGTTTCTCGCTCCGGAACCATCGCCGCCTACATTGCGGAGCACTT
GGCCATTCTAAAGAAACAAGTCATAGCTAATGCCCCAGGTATTCAATCAG
AAGCATTCACCGTCAACTTCACCATCCAAGGACTAATACCGTACCAACGA
TTTGGAACTCAAGCCACAACTATGCTATTGAACTCCCAGCCGACTACAAT
CAATGAATTTCAGCTTAACCTCAAAGAATATGAGCGTTTACTACAATGGC
AATCACAGCAAGTCTCTTCTTCGCCTTCCGGTTGCTCTTTCAAAAAGCGT
TATAGTGGCAGGGGACATGGTCGTAGCCGTGGCAGAGGCCAAGGCCACCG
TTACCAATACAGGCAAGTGACTGAAATGCTGTCAAATATATCCAACAAAA
TAGAGGAGATGCAGTCCGATAACAAAGCTCGCAAGCTTCGCGGCAGGGCA
CGTGCTAATGCCGCTCATGGGCAACCCGAAATATCGGAAGAGACCCTCCG
GGATCTCATGGAAGTGGCAGACTCGGCAGATGTGGATGCAGAACCGCAGC
TGGGGAACACCTCTGATCAGAACTAA
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