Ggra4051.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4051.t1
Unique NameGgra4051.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:500957..502951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4051Ggra4051Gracilaria gracilis GNS1m malegenetig00000908_pilon 500957..502951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1Ggra4051.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 500957..502951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1.stop1Ggra4051.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 500957..500959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1.CDS1Ggra4051.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 500957..501328 -
Ggra4051.t1.CDS2Ggra4051.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 501461..502071 -
Ggra4051.t1.CDS3Ggra4051.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 502252..502951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1.exon1Ggra4051.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 500957..501328 -
Ggra4051.t1.exon2Ggra4051.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 501461..502071 -
Ggra4051.t1.exon3Ggra4051.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 502252..502951 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1.intron1Ggra4051.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 501329..501460 -
Ggra4051.t1.intron2Ggra4051.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 502072..502251 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4051.t1.start1Ggra4051.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 502949..502951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4051.t1 ID=Ggra4051.t1|Name=Ggra4051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp
MQAARVQHPRMPTPHQLLSQSPVATGNDTIAPLVYDRSQSLPITQIPAGS
LPRQNNESAFTGDGSTFLPTITTPLHPIPPCSPSVVQGVTQGSTPGPSGI
HQQSQRRRLNPGIRCPASAGPSAGLPPTTSRPPVDPRVQDRQNDDSAGTR
RRRVQRSNSRTERMNNRNHEAGSAIDNGSEENVVTQSLQQERLIALKEQG
IEVLRSSNEELKIMRRILERIERNTSEMSIRNGDRENSKCRSEDPVNFID
NYFVLKSGSRIHAVGIEPEMRGQKESSALELEFTHIKARMRKTTMLFDDE
ITKRMAAVFMEKIPGLNHFLSLHSTPSRAKIQNIFCLNMMRYVQERKLSE
GVNVFYEGEILDNAFTAAENVFYDVAFRQQRNAYNEMSKAFSEQELQSLL
SPLKSYVRQTRREDLDIFARRAHRHVEIFVKAYIVEKVSKYRKLNETQLL
SLLRMRKRSSSGSSHEHAYLEHCFSISEKLEKGYLTQYFGSSEMEYISLR
LPEAPGTGGTTTVSAVTPTVYRSKMPDLFQSPFVGGDIKSWLQNHEQKYC
RDRLSQTQQM*
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spliced messenger RNA

>Ggra4051.t1 ID=Ggra4051.t1|Name=Ggra4051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000908_pilon:500957..502951- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGGCCCGTGTGCAGCATCCGAGAATGCCAACACCACATCAATT
GCTGTCCCAATCTCCTGTGGCAACTGGCAACGATACAATAGCTCCTCTGG
TCTATGATCGGTCTCAGTCTCTGCCTATCACACAGATACCGGCTGGCTCG
CTCCCGAGACAGAACAATGAGAGTGCATTCACAGGAGACGGGTCCACGTT
TCTTCCGACAATTACTACACCACTCCATCCCATTCCACCCTGTTCCCCAT
CTGTGGTGCAAGGTGTCACACAAGGTAGTACGCCAGGGCCATCTGGAATA
CATCAACAATCACAGAGACGGCGCCTAAACCCCGGCATTCGTTGTCCAGC
AAGCGCTGGGCCATCGGCAGGACTGCCACCTACAACATCACGTCCACCGG
TTGATCCTCGTGTACAAGACAGGCAAAATGATGACAGTGCAGGTACAAGA
AGGCGTAGAGTGCAGCGCAGTAACTCTAGGACAGAAAGAATGAACAACCG
AAACCACGAAGCTGGTAGTGCTATTGATAATGGGTCAGAAGAGAATGTTG
TGACGCAAAGCTTGCAACAAGAGAGACTGATCGCTCTAAAAGAGCAAGGG
ATTGAAGTACTGAGATCTTCTAACGAGGAGTTAAAGATTATGAGAAGAAT
TTTGGAACGGATTGAGAGGAATACCTCTGAAATGTCAATCAGAAATGGGG
ATCGCGAGAACAGCAAATGTCGGAGCGAGGACCCTGTGAACTTCATTGAT
AACTACTTTGTGCTGAAGAGTGGTAGCAGGATTCATGCAGTCGGCATAGA
ACCTGAAATGAGGGGTCAGAAGGAGAGCTCTGCTCTGGAACTCGAGTTCA
CCCATATCAAAGCAAGAATGAGGAAGACTACTATGCTCTTTGACGACGAA
ATTACTAAGCGAATGGCCGCTGTTTTCATGGAGAAGATACCGGGCTTGAA
TCATTTCTTATCGCTCCATTCCACACCAAGCAGGGCCAAGATTCAAAACA
TTTTTTGTTTGAACATGATGCGGTATGTGCAAGAGCGTAAGCTCTCAGAG
GGAGTGAACGTCTTTTATGAGGGTGAAATTCTGGATAATGCCTTCACCGC
AGCAGAGAATGTGTTTTATGACGTCGCGTTCCGTCAGCAACGAAACGCGT
ACAATGAAATGTCTAAAGCATTTTCGGAACAAGAGCTACAATCGTTATTA
TCTCCGCTCAAGTCATACGTTCGCCAAACAAGGCGAGAAGACTTGGACAT
ATTTGCAAGACGTGCTCACCGGCATGTGGAAATCTTTGTGAAAGCATATA
TCGTTGAGAAAGTTAGCAAATACCGGAAACTAAATGAGACACAACTTTTA
AGTCTCTTACGCATGCGAAAAAGATCATCTTCGGGTTCCAGCCATGAACA
CGCTTATCTAGAGCACTGCTTTTCTATATCGGAGAAACTGGAAAAGGGAT
ATCTTACACAATACTTTGGTTCATCTGAGATGGAGTATATTAGCTTGCGA
TTGCCGGAAGCACCTGGTACAGGAGGAACGACAACAGTCTCTGCTGTCAC
TCCAACTGTGTACCGTTCAAAGATGCCGGACCTGTTTCAATCGCCTTTTG
TTGGCGGCGACATTAAGTCTTGGTTGCAGAATCACGAACAAAAGTACTGT
CGTGATCGCCTGAGTCAAACGCAACAAATGTAA
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protein sequence of Ggra4051.t1

>Ggra4051.t1 ID=Ggra4051.t1|Name=Ggra4051.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=561bp
MQAARVQHPRMPTPHQLLSQSPVATGNDTIAPLVYDRSQSLPITQIPAGS
LPRQNNESAFTGDGSTFLPTITTPLHPIPPCSPSVVQGVTQGSTPGPSGI
HQQSQRRRLNPGIRCPASAGPSAGLPPTTSRPPVDPRVQDRQNDDSAGTR
RRRVQRSNSRTERMNNRNHEAGSAIDNGSEENVVTQSLQQERLIALKEQG
IEVLRSSNEELKIMRRILERIERNTSEMSIRNGDRENSKCRSEDPVNFID
NYFVLKSGSRIHAVGIEPEMRGQKESSALELEFTHIKARMRKTTMLFDDE
ITKRMAAVFMEKIPGLNHFLSLHSTPSRAKIQNIFCLNMMRYVQERKLSE
GVNVFYEGEILDNAFTAAENVFYDVAFRQQRNAYNEMSKAFSEQELQSLL
SPLKSYVRQTRREDLDIFARRAHRHVEIFVKAYIVEKVSKYRKLNETQLL
SLLRMRKRSSSGSSHEHAYLEHCFSISEKLEKGYLTQYFGSSEMEYISLR
LPEAPGTGGTTTVSAVTPTVYRSKMPDLFQSPFVGGDIKSWLQNHEQKYC
RDRLSQTQQM*
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mRNA from alignment at tig00000908_pilon:500957..502951-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4051.t1 ID=Ggra4051.t1|Name=Ggra4051.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1995bp|location=Sequence derived from alignment at tig00000908_pilon:500957..502951- (Gracilaria gracilis GNS1m male)
ATGCAAGCGGCCCGTGTGCAGCATCCGAGAATGCCAACACCACATCAATT
GCTGTCCCAATCTCCTGTGGCAACTGGCAACGATACAATAGCTCCTCTGG
TCTATGATCGGTCTCAGTCTCTGCCTATCACACAGATACCGGCTGGCTCG
CTCCCGAGACAGAACAATGAGAGTGCATTCACAGGAGACGGGTCCACGTT
TCTTCCGACAATTACTACACCACTCCATCCCATTCCACCCTGTTCCCCAT
CTGTGGTGCAAGGTGTCACACAAGGTAGTACGCCAGGGCCATCTGGAATA
CATCAACAATCACAGAGACGGCGCCTAAACCCCGGCATTCGTTGTCCAGC
AAGCGCTGGGCCATCGGCAGGACTGCCACCTACAACATCACGTCCACCGG
TTGATCCTCGTGTACAAGACAGGCAAAATGATGACAGTGCAGGTACAAGA
AGGCGTAGAGTGCAGCGCAGTAACTCTAGGACAGAAAGAATGAACAACCG
AAACCACGAAGCTGGTAGTGCTATTGATAATGGGTCAGAAGAGAATGTTG
TGACGCAAAGCTTGCAACAAGAGAGACTGATCGCTCTAAAAGAGCAAGGG
ATTGAAGTACTGAGATCTTCTAACGAGGAGTTAAAGATTATGAGAAGAAT
TTTGGAACGGATTGAGAGGAATACCTCTGAAATGTCAATCAGAAATGGGG
GTAGTGTAACAAACTCTGAGCAACGAAACGATTACTTGATTCTTGTGAGA
GGAATATGCAATGTAGAAAGGTTTCTGAAGGCTTCAGCAGCACTGTGACT
ATTCCACATGCCATTCATGTACACAACCTCCGAAAGCAAAAGATATGTTA
CCAAACTCGTCAAGAATGCGCTTCAATCAGATCGCGAGAACAGCAAATGT
CGGAGCGAGGACCCTGTGAACTTCATTGATAACTACTTTGTGCTGAAGAG
TGGTAGCAGGATTCATGCAGTCGGCATAGAACCTGAAATGAGGGGTCAGA
AGGAGAGCTCTGCTCTGGAACTCGAGTTCACCCATATCAAAGCAAGAATG
AGGAAGACTACTATGCTCTTTGACGACGAAATTACTAAGCGAATGGCCGC
TGTTTTCATGGAGAAGATACCGGGCTTGAATCATTTCTTATCGCTCCATT
CCACACCAAGCAGGGCCAAGATTCAAAACATTTTTTGTTTGAACATGATG
CGGTATGTGCAAGAGCGTAAGCTCTCAGAGGGAGTGAACGTCTTTTATGA
GGGTGAAATTCTGGATAATGCCTTCACCGCAGCAGAGAATGTGTTTTATG
ACGTCGCGTTCCGTCAGCAACGAAACGCGTACAATGAAATGTCTAAAGCA
TTTTCGGAACAAGAGCTACAATCGTTATTATCTCCGCTCAAGTCATACGT
TCGCCAAACAAGGCGAGAAGACTTGGACATATTTGCAAGACGTGCTCACC
GGCATGTGGAAATCTTTGTGAAAGCATATATCGTTGAGAAAGTAAGTGTA
TGTCAAATTCCCCCCTGTCCACCGCCTATCTAACCCTGTTTTGTTCTTTC
TCCGTACCTGCAGTTGTAATCAAAAGTACTTGCTGGTGCTCTATCGGCAT
CCGTTTCTGTGTATGACCCCGAGGTTAGCAAATACCGGAAACTAAATGAG
ACACAACTTTTAAGTCTCTTACGCATGCGAAAAAGATCATCTTCGGGTTC
CAGCCATGAACACGCTTATCTAGAGCACTGCTTTTCTATATCGGAGAAAC
TGGAAAAGGGATATCTTACACAATACTTTGGTTCATCTGAGATGGAGTAT
ATTAGCTTGCGATTGCCGGAAGCACCTGGTACAGGAGGAACGACAACAGT
CTCTGCTGTCACTCCAACTGTGTACCGTTCAAAGATGCCGGACCTGTTTC
AATCGCCTTTTGTTGGCGGCGACATTAAGTCTTGGTTGCAGAATCACGAA
CAAAAGTACTGTCGTGATCGCCTGAGTCAAACGCAACAAATGTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:500957..502951-

>Ggra4051.t1 ID=Ggra4051.t1|Name=Ggra4051.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1683bp|location=Sequence derived from alignment at tig00000908_pilon:500957..502951- (Gracilaria gracilis GNS1m male)
ATGCAAGCGGCCCGTGTGCAGCATCCGAGAATGCCAACACCACATCAATT
GCTGTCCCAATCTCCTGTGGCAACTGGCAACGATACAATAGCTCCTCTGG
TCTATGATCGGTCTCAGTCTCTGCCTATCACACAGATACCGGCTGGCTCG
CTCCCGAGACAGAACAATGAGAGTGCATTCACAGGAGACGGGTCCACGTT
TCTTCCGACAATTACTACACCACTCCATCCCATTCCACCCTGTTCCCCAT
CTGTGGTGCAAGGTGTCACACAAGGTAGTACGCCAGGGCCATCTGGAATA
CATCAACAATCACAGAGACGGCGCCTAAACCCCGGCATTCGTTGTCCAGC
AAGCGCTGGGCCATCGGCAGGACTGCCACCTACAACATCACGTCCACCGG
TTGATCCTCGTGTACAAGACAGGCAAAATGATGACAGTGCAGGTACAAGA
AGGCGTAGAGTGCAGCGCAGTAACTCTAGGACAGAAAGAATGAACAACCG
AAACCACGAAGCTGGTAGTGCTATTGATAATGGGTCAGAAGAGAATGTTG
TGACGCAAAGCTTGCAACAAGAGAGACTGATCGCTCTAAAAGAGCAAGGG
ATTGAAGTACTGAGATCTTCTAACGAGGAGTTAAAGATTATGAGAAGAAT
TTTGGAACGGATTGAGAGGAATACCTCTGAAATGTCAATCAGAAATGGGG
ATCGCGAGAACAGCAAATGTCGGAGCGAGGACCCTGTGAACTTCATTGAT
AACTACTTTGTGCTGAAGAGTGGTAGCAGGATTCATGCAGTCGGCATAGA
ACCTGAAATGAGGGGTCAGAAGGAGAGCTCTGCTCTGGAACTCGAGTTCA
CCCATATCAAAGCAAGAATGAGGAAGACTACTATGCTCTTTGACGACGAA
ATTACTAAGCGAATGGCCGCTGTTTTCATGGAGAAGATACCGGGCTTGAA
TCATTTCTTATCGCTCCATTCCACACCAAGCAGGGCCAAGATTCAAAACA
TTTTTTGTTTGAACATGATGCGGTATGTGCAAGAGCGTAAGCTCTCAGAG
GGAGTGAACGTCTTTTATGAGGGTGAAATTCTGGATAATGCCTTCACCGC
AGCAGAGAATGTGTTTTATGACGTCGCGTTCCGTCAGCAACGAAACGCGT
ACAATGAAATGTCTAAAGCATTTTCGGAACAAGAGCTACAATCGTTATTA
TCTCCGCTCAAGTCATACGTTCGCCAAACAAGGCGAGAAGACTTGGACAT
ATTTGCAAGACGTGCTCACCGGCATGTGGAAATCTTTGTGAAAGCATATA
TCGTTGAGAAAGTTAGCAAATACCGGAAACTAAATGAGACACAACTTTTA
AGTCTCTTACGCATGCGAAAAAGATCATCTTCGGGTTCCAGCCATGAACA
CGCTTATCTAGAGCACTGCTTTTCTATATCGGAGAAACTGGAAAAGGGAT
ATCTTACACAATACTTTGGTTCATCTGAGATGGAGTATATTAGCTTGCGA
TTGCCGGAAGCACCTGGTACAGGAGGAACGACAACAGTCTCTGCTGTCAC
TCCAACTGTGTACCGTTCAAAGATGCCGGACCTGTTTCAATCGCCTTTTG
TTGGCGGCGACATTAAGTCTTGGTTGCAGAATCACGAACAAAAGTACTGT
CGTGATCGCCTGAGTCAAACGCAACAAATGTAA
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