Ggra4046.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4046.t1
Unique NameGgra4046.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:455741..457490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703435.1
PFAMsLisH,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K04508
KEGG Pathwayko04013,ko04310,map04013,map04310
Evalue3.07e-121
EggNOG OGsCOG2319@1|root,KOG0273@2759|Eukaryota
Descriptiontranscription corepressor activity
COG categoryO
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4046Ggra4046Gracilaria gracilis GNS1m malegenetig00000908_pilon 455741..457490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1Ggra4046.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 455741..457490 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1.start1Ggra4046.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 455741..455743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1.CDS1Ggra4046.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 455741..455822 +
Ggra4046.t1.CDS2Ggra4046.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 456019..457490 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1.exon1Ggra4046.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 455741..455822 +
Ggra4046.t1.exon2Ggra4046.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 456019..457490 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1.intron1Ggra4046.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 455823..456018 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4046.t1.stop1Ggra4046.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 457488..457490 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4046.t1 ID=Ggra4046.t1|Name=Ggra4046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=518bp
MSSKPQTHTTVSSDEINYLVFRYLQESGYVHSAFAFGYESQVIRTKIDGS
QIPPGALLSFIQRGVNFVEIEESLMDESKEGTHAMDGVTSLLDVHRCLCN
QDFKPPRQVNVINGTSDTPMMMDTDDKEPATNIDKTKERVKSNIDVPDSD
VLSLRGHTSEVFVCAWNPRTSVLATGSGDSTARIWPIPTTFPAPSSASAA
AAAQPLVLPHAAERPRSSTLAKHKSNDVTTLDWNPSGTLLATGTYDGVAK
VWSETGELKHSLVRHTGPLFSLKWNKKGDHILIGSVDKTTTVWNGLTGQL
VRQYTMHEAPCLDVDWKDDLVFASCSTDKLIYMQSIESNTPIRVYRGHED
EINCIKFDPSGTLLASCSDDYTAKVWSAKSQKMVCNLTEHTREVYTMQWC
PSANRRLVLATASFDAMVKLWDVSSGRCMKTLTGHTDPVYSLAYSPDGQY
LVSGSFDRTFNIWSAKDGTLVRRFSGDGGIFEVAWNPVGDKIAACFSSNT
VCVVDLRKMLATTVKAS*
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spliced messenger RNA

>Ggra4046.t1 ID=Ggra4046.t1|Name=Ggra4046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000908_pilon:455741..457490+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCAAGCCCCAGACTCACACTACCGTGAGCTCAGATGAGATCAA
TTATCTAGTCTTCCGTTATCTACAAGAGTCCGGATACGTGCACAGCGCTT
TCGCCTTCGGCTACGAAAGCCAAGTGATCAGGACCAAAATTGATGGCTCT
CAAATACCCCCAGGCGCTCTTCTTTCTTTCATCCAACGCGGCGTCAACTT
TGTCGAAATCGAAGAGAGTCTCATGGACGAGAGTAAGGAAGGCACACATG
CCATGGATGGCGTCACATCGCTACTCGACGTCCACCGATGCCTTTGCAAT
CAGGATTTCAAGCCCCCTCGTCAAGTCAATGTAATCAATGGAACGAGTGA
CACTCCCATGATGATGGACACAGACGACAAGGAACCCGCAACAAACATCG
ACAAAACAAAGGAACGTGTCAAGTCAAATATAGACGTGCCAGACTCGGAC
GTGCTCAGCCTCAGAGGACATACATCGGAGGTGTTTGTCTGCGCGTGGAA
CCCACGCACATCCGTGTTGGCCACGGGTTCGGGCGACTCCACAGCTCGAA
TCTGGCCTATACCTACCACCTTTCCAGCCCCGTCTTCTGCGTCGGCGGCG
GCAGCTGCACAGCCTTTGGTGCTGCCTCATGCAGCCGAACGGCCACGGTC
AAGTACTTTAGCTAAACACAAATCCAATGATGTCACCACTTTGGATTGGA
ATCCAAGTGGTACACTGCTTGCAACGGGTACATATGATGGAGTTGCCAAA
GTGTGGAGTGAAACTGGCGAACTGAAGCATAGTCTTGTGCGACATACTGG
ACCATTGTTTTCGTTAAAGTGGAACAAGAAGGGTGATCATATACTAATTG
GGTCGGTTGATAAAACCACTACGGTATGGAACGGACTCACTGGGCAGCTT
GTTCGACAATACACTATGCATGAAGCTCCCTGTTTGGATGTGGATTGGAA
GGACGATCTTGTTTTCGCATCTTGTTCAACAGACAAGCTTATTTATATGC
AAAGTATTGAATCCAACACCCCTATTCGCGTATACCGTGGACATGAAGAC
GAAATCAACTGTATTAAGTTTGACCCGTCTGGAACACTTCTGGCTTCATG
TTCTGATGACTATACAGCAAAGGTATGGAGCGCTAAGAGTCAAAAGATGG
TGTGCAACCTAACAGAGCACACCAGAGAGGTGTACACAATGCAATGGTGT
CCTAGTGCCAATCGGAGGTTGGTTCTCGCAACAGCATCTTTTGATGCGAT
GGTGAAGTTGTGGGACGTAAGTTCAGGGCGATGTATGAAGACACTCACGG
GTCATACAGATCCTGTATACTCGCTAGCATATAGTCCTGATGGCCAATAC
TTGGTAAGCGGTTCCTTCGATCGAACGTTTAATATCTGGAGCGCGAAGGA
CGGTACGCTAGTGAGACGATTTTCTGGAGATGGCGGAATCTTTGAAGTTG
CGTGGAATCCAGTAGGGGACAAGATCGCTGCATGTTTTAGTAGCAATACA
GTATGCGTGGTGGACTTGAGAAAGATGCTTGCAACAACGGTAAAGGCCTC
TTAG
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protein sequence of Ggra4046.t1

>Ggra4046.t1 ID=Ggra4046.t1|Name=Ggra4046.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=518bp
MSSKPQTHTTVSSDEINYLVFRYLQESGYVHSAFAFGYESQVIRTKIDGS
QIPPGALLSFIQRGVNFVEIEESLMDESKEGTHAMDGVTSLLDVHRCLCN
QDFKPPRQVNVINGTSDTPMMMDTDDKEPATNIDKTKERVKSNIDVPDSD
VLSLRGHTSEVFVCAWNPRTSVLATGSGDSTARIWPIPTTFPAPSSASAA
AAAQPLVLPHAAERPRSSTLAKHKSNDVTTLDWNPSGTLLATGTYDGVAK
VWSETGELKHSLVRHTGPLFSLKWNKKGDHILIGSVDKTTTVWNGLTGQL
VRQYTMHEAPCLDVDWKDDLVFASCSTDKLIYMQSIESNTPIRVYRGHED
EINCIKFDPSGTLLASCSDDYTAKVWSAKSQKMVCNLTEHTREVYTMQWC
PSANRRLVLATASFDAMVKLWDVSSGRCMKTLTGHTDPVYSLAYSPDGQY
LVSGSFDRTFNIWSAKDGTLVRRFSGDGGIFEVAWNPVGDKIAACFSSNT
VCVVDLRKMLATTVKAS*
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mRNA from alignment at tig00000908_pilon:455741..457490+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4046.t1 ID=Ggra4046.t1|Name=Ggra4046.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1750bp|location=Sequence derived from alignment at tig00000908_pilon:455741..457490+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCAAGCCCCAGACTCACACTACCGTGAGCTCAGATGAGATCAA
TTATCTAGTCTTCCGTTATCTACAAGAGTCCGGTACGTTTACCAAACAGT
TTACTCCCGTTCCGTCTGCGTCGAACGTGCACATATGCATCGCCACCAAC
TCCTTTGCATTTGAGTGTTGTTGCACTCGATTCGTTCGCGCCGTGCAGCC
GTTTCAATTGCATGCTAACTTTGCGTCTGCGTCTGTTTTATTTTTGCTTG
TTGCTTCCACTTGATCCTACCTTCGCAGGATACGTGCACAGCGCTTTCGC
CTTCGGCTACGAAAGCCAAGTGATCAGGACCAAAATTGATGGCTCTCAAA
TACCCCCAGGCGCTCTTCTTTCTTTCATCCAACGCGGCGTCAACTTTGTC
GAAATCGAAGAGAGTCTCATGGACGAGAGTAAGGAAGGCACACATGCCAT
GGATGGCGTCACATCGCTACTCGACGTCCACCGATGCCTTTGCAATCAGG
ATTTCAAGCCCCCTCGTCAAGTCAATGTAATCAATGGAACGAGTGACACT
CCCATGATGATGGACACAGACGACAAGGAACCCGCAACAAACATCGACAA
AACAAAGGAACGTGTCAAGTCAAATATAGACGTGCCAGACTCGGACGTGC
TCAGCCTCAGAGGACATACATCGGAGGTGTTTGTCTGCGCGTGGAACCCA
CGCACATCCGTGTTGGCCACGGGTTCGGGCGACTCCACAGCTCGAATCTG
GCCTATACCTACCACCTTTCCAGCCCCGTCTTCTGCGTCGGCGGCGGCAG
CTGCACAGCCTTTGGTGCTGCCTCATGCAGCCGAACGGCCACGGTCAAGT
ACTTTAGCTAAACACAAATCCAATGATGTCACCACTTTGGATTGGAATCC
AAGTGGTACACTGCTTGCAACGGGTACATATGATGGAGTTGCCAAAGTGT
GGAGTGAAACTGGCGAACTGAAGCATAGTCTTGTGCGACATACTGGACCA
TTGTTTTCGTTAAAGTGGAACAAGAAGGGTGATCATATACTAATTGGGTC
GGTTGATAAAACCACTACGGTATGGAACGGACTCACTGGGCAGCTTGTTC
GACAATACACTATGCATGAAGCTCCCTGTTTGGATGTGGATTGGAAGGAC
GATCTTGTTTTCGCATCTTGTTCAACAGACAAGCTTATTTATATGCAAAG
TATTGAATCCAACACCCCTATTCGCGTATACCGTGGACATGAAGACGAAA
TCAACTGTATTAAGTTTGACCCGTCTGGAACACTTCTGGCTTCATGTTCT
GATGACTATACAGCAAAGGTATGGAGCGCTAAGAGTCAAAAGATGGTGTG
CAACCTAACAGAGCACACCAGAGAGGTGTACACAATGCAATGGTGTCCTA
GTGCCAATCGGAGGTTGGTTCTCGCAACAGCATCTTTTGATGCGATGGTG
AAGTTGTGGGACGTAAGTTCAGGGCGATGTATGAAGACACTCACGGGTCA
TACAGATCCTGTATACTCGCTAGCATATAGTCCTGATGGCCAATACTTGG
TAAGCGGTTCCTTCGATCGAACGTTTAATATCTGGAGCGCGAAGGACGGT
ACGCTAGTGAGACGATTTTCTGGAGATGGCGGAATCTTTGAAGTTGCGTG
GAATCCAGTAGGGGACAAGATCGCTGCATGTTTTAGTAGCAATACAGTAT
GCGTGGTGGACTTGAGAAAGATGCTTGCAACAACGGTAAAGGCCTCTTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:455741..457490+

>Ggra4046.t1 ID=Ggra4046.t1|Name=Ggra4046.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00000908_pilon:455741..457490+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCAAGCCCCAGACTCACACTACCGTGAGCTCAGATGAGATCAA
TTATCTAGTCTTCCGTTATCTACAAGAGTCCGGATACGTGCACAGCGCTT
TCGCCTTCGGCTACGAAAGCCAAGTGATCAGGACCAAAATTGATGGCTCT
CAAATACCCCCAGGCGCTCTTCTTTCTTTCATCCAACGCGGCGTCAACTT
TGTCGAAATCGAAGAGAGTCTCATGGACGAGAGTAAGGAAGGCACACATG
CCATGGATGGCGTCACATCGCTACTCGACGTCCACCGATGCCTTTGCAAT
CAGGATTTCAAGCCCCCTCGTCAAGTCAATGTAATCAATGGAACGAGTGA
CACTCCCATGATGATGGACACAGACGACAAGGAACCCGCAACAAACATCG
ACAAAACAAAGGAACGTGTCAAGTCAAATATAGACGTGCCAGACTCGGAC
GTGCTCAGCCTCAGAGGACATACATCGGAGGTGTTTGTCTGCGCGTGGAA
CCCACGCACATCCGTGTTGGCCACGGGTTCGGGCGACTCCACAGCTCGAA
TCTGGCCTATACCTACCACCTTTCCAGCCCCGTCTTCTGCGTCGGCGGCG
GCAGCTGCACAGCCTTTGGTGCTGCCTCATGCAGCCGAACGGCCACGGTC
AAGTACTTTAGCTAAACACAAATCCAATGATGTCACCACTTTGGATTGGA
ATCCAAGTGGTACACTGCTTGCAACGGGTACATATGATGGAGTTGCCAAA
GTGTGGAGTGAAACTGGCGAACTGAAGCATAGTCTTGTGCGACATACTGG
ACCATTGTTTTCGTTAAAGTGGAACAAGAAGGGTGATCATATACTAATTG
GGTCGGTTGATAAAACCACTACGGTATGGAACGGACTCACTGGGCAGCTT
GTTCGACAATACACTATGCATGAAGCTCCCTGTTTGGATGTGGATTGGAA
GGACGATCTTGTTTTCGCATCTTGTTCAACAGACAAGCTTATTTATATGC
AAAGTATTGAATCCAACACCCCTATTCGCGTATACCGTGGACATGAAGAC
GAAATCAACTGTATTAAGTTTGACCCGTCTGGAACACTTCTGGCTTCATG
TTCTGATGACTATACAGCAAAGGTATGGAGCGCTAAGAGTCAAAAGATGG
TGTGCAACCTAACAGAGCACACCAGAGAGGTGTACACAATGCAATGGTGT
CCTAGTGCCAATCGGAGGTTGGTTCTCGCAACAGCATCTTTTGATGCGAT
GGTGAAGTTGTGGGACGTAAGTTCAGGGCGATGTATGAAGACACTCACGG
GTCATACAGATCCTGTATACTCGCTAGCATATAGTCCTGATGGCCAATAC
TTGGTAAGCGGTTCCTTCGATCGAACGTTTAATATCTGGAGCGCGAAGGA
CGGTACGCTAGTGAGACGATTTTCTGGAGATGGCGGAATCTTTGAAGTTG
CGTGGAATCCAGTAGGGGACAAGATCGCTGCATGTTTTAGTAGCAATACA
GTATGCGTGGTGGACTTGAGAAAGATGCTTGCAACAACGGTAAAGGCCTC
TTAG
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