Ggra4044.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4044.t1
Unique NameGgra4044.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:448816..449625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002613031.1
Preferred namePURA
PFAMsPurA
Max annot lvl33208|Metazoa
KEGG koko:K21772,ko:K21799
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000278,GO:0000781,GO:0000784,GO:0000900,GO:0000981,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0003705,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006355,GO:0006357,GO:0006417,GO:0006725,GO:0006807,GO:0006915,GO:0006996,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007346,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030371,GO:0030425,GO:0030894,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032392,GO:0032422,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0036477,GO:0040012,GO:0042127,GO:0042162,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044703,GO:0045182,GO:0045495,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0046332,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051726,GO:0060255,GO:0060293,GO:0060968,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098687,GO:0120025,GO:0120038,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990124,GO:1990837,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue3.03e-14
EggNOG OGsKOG3074@1|root,KOG3074@2759|Eukaryota,39T4T@33154|Opisthokonta,3BGB4@33208|Metazoa,3CS5F@33213|Bilateria,48A0R@7711|Chordata
Descriptionpurine-rich negative regulatory element binding
COG categoryK
BRITEko00000,ko03019,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4044Ggra4044Gracilaria gracilis GNS1m malegenetig00000908_pilon 448816..449625 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4044.t1.start1Ggra4044.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 448816..448818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4044.t1.CDS1Ggra4044.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 448816..449625 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4044.t1.exon1Ggra4044.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 448816..449625 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4044.t1.stop1Ggra4044.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 449623..449625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4044.t1Ggra4044.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 448816..449625 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4044.t1 ID=Ggra4044.t1|Name=Ggra4044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MGENEPDSQPDGVVILGYGNRDELMSVRITVGTRRVTMALCENDRGRFLR
LIDNRSRIMVPAAGIMQMRDALVALETALETAPPPKQPSQPPQNGEEIKS
ELISSQRIASEGRKIFLDVMENAKGRYFKICKVSVRRINMIIPIQGLPFL
REALDLLLEKTPPDTSVTDPSSVQRLTRTLERVTPLNDGPSVTLNIVQRE
IRTMGKRVIFESGANRRGSYIKISENNFPQRTSIILPHTTVPQIIELLQE
VVQSGDPAEALESAKAAQT*
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spliced messenger RNA

>Ggra4044.t1 ID=Ggra4044.t1|Name=Ggra4044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000908_pilon:448816..449625+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAGAACGAGCCAGACAGCCAGCCGGATGGCGTCGTCATTCTGGG
TTACGGTAACCGCGACGAGTTGATGAGTGTGCGAATCACCGTCGGCACGC
GCCGCGTCACCATGGCCTTGTGCGAGAATGATCGCGGAAGGTTTCTACGT
CTCATCGACAACCGCTCGCGCATCATGGTGCCAGCCGCCGGCATCATGCA
GATGAGGGACGCCCTCGTCGCGCTGGAGACCGCCTTAGAAACCGCCCCGC
CCCCAAAACAACCATCGCAACCGCCGCAGAACGGCGAGGAAATCAAGTCC
GAGCTCATCAGCTCGCAGCGCATTGCGTCCGAAGGCCGCAAGATCTTCCT
CGACGTCATGGAGAACGCAAAGGGACGCTATTTCAAGATCTGCAAGGTGT
CTGTGCGTCGTATCAACATGATCATACCCATTCAGGGCCTGCCGTTTCTA
CGGGAGGCCTTGGATTTGTTGCTGGAGAAGACGCCGCCGGATACCTCCGT
CACAGACCCTTCGTCAGTACAACGTCTCACCAGGACCTTGGAGCGCGTCA
CCCCGCTCAATGATGGCCCCTCGGTCACACTAAACATTGTGCAACGCGAG
ATTCGCACCATGGGCAAGCGCGTCATTTTCGAGTCTGGTGCCAATCGTCG
CGGTAGCTACATCAAGATCTCCGAGAATAACTTTCCGCAACGCACCTCTA
TCATTCTCCCTCACACAACCGTTCCCCAAATAATCGAACTTCTGCAGGAA
GTGGTACAGAGTGGAGACCCGGCCGAGGCATTGGAATCTGCCAAAGCCGC
CCAAACTTGA
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protein sequence of Ggra4044.t1

>Ggra4044.t1 ID=Ggra4044.t1|Name=Ggra4044.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MGENEPDSQPDGVVILGYGNRDELMSVRITVGTRRVTMALCENDRGRFLR
LIDNRSRIMVPAAGIMQMRDALVALETALETAPPPKQPSQPPQNGEEIKS
ELISSQRIASEGRKIFLDVMENAKGRYFKICKVSVRRINMIIPIQGLPFL
REALDLLLEKTPPDTSVTDPSSVQRLTRTLERVTPLNDGPSVTLNIVQRE
IRTMGKRVIFESGANRRGSYIKISENNFPQRTSIILPHTTVPQIIELLQE
VVQSGDPAEALESAKAAQT*
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mRNA from alignment at tig00000908_pilon:448816..449625+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4044.t1 ID=Ggra4044.t1|Name=Ggra4044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000908_pilon:448816..449625+ (Gracilaria gracilis GNS1m male)
ATGGGAGAGAACGAGCCAGACAGCCAGCCGGATGGCGTCGTCATTCTGGG
TTACGGTAACCGCGACGAGTTGATGAGTGTGCGAATCACCGTCGGCACGC
GCCGCGTCACCATGGCCTTGTGCGAGAATGATCGCGGAAGGTTTCTACGT
CTCATCGACAACCGCTCGCGCATCATGGTGCCAGCCGCCGGCATCATGCA
GATGAGGGACGCCCTCGTCGCGCTGGAGACCGCCTTAGAAACCGCCCCGC
CCCCAAAACAACCATCGCAACCGCCGCAGAACGGCGAGGAAATCAAGTCC
GAGCTCATCAGCTCGCAGCGCATTGCGTCCGAAGGCCGCAAGATCTTCCT
CGACGTCATGGAGAACGCAAAGGGACGCTATTTCAAGATCTGCAAGGTGT
CTGTGCGTCGTATCAACATGATCATACCCATTCAGGGCCTGCCGTTTCTA
CGGGAGGCCTTGGATTTGTTGCTGGAGAAGACGCCGCCGGATACCTCCGT
CACAGACCCTTCGTCAGTACAACGTCTCACCAGGACCTTGGAGCGCGTCA
CCCCGCTCAATGATGGCCCCTCGGTCACACTAAACATTGTGCAACGCGAG
ATTCGCACCATGGGCAAGCGCGTCATTTTCGAGTCTGGTGCCAATCGTCG
CGGTAGCTACATCAAGATCTCCGAGAATAACTTTCCGCAACGCACCTCTA
TCATTCTCCCTCACACAACCGTTCCCCAAATAATCGAACTTCTGCAGGAA
GTGGTACAGAGTGGAGACCCGGCCGAGGCATTGGAATCTGCCAAAGCCGC
CCAAACTTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:448816..449625+

>Ggra4044.t1 ID=Ggra4044.t1|Name=Ggra4044.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000908_pilon:448816..449625+ (Gracilaria gracilis GNS1m male)
ATGGGAGAGAACGAGCCAGACAGCCAGCCGGATGGCGTCGTCATTCTGGG
TTACGGTAACCGCGACGAGTTGATGAGTGTGCGAATCACCGTCGGCACGC
GCCGCGTCACCATGGCCTTGTGCGAGAATGATCGCGGAAGGTTTCTACGT
CTCATCGACAACCGCTCGCGCATCATGGTGCCAGCCGCCGGCATCATGCA
GATGAGGGACGCCCTCGTCGCGCTGGAGACCGCCTTAGAAACCGCCCCGC
CCCCAAAACAACCATCGCAACCGCCGCAGAACGGCGAGGAAATCAAGTCC
GAGCTCATCAGCTCGCAGCGCATTGCGTCCGAAGGCCGCAAGATCTTCCT
CGACGTCATGGAGAACGCAAAGGGACGCTATTTCAAGATCTGCAAGGTGT
CTGTGCGTCGTATCAACATGATCATACCCATTCAGGGCCTGCCGTTTCTA
CGGGAGGCCTTGGATTTGTTGCTGGAGAAGACGCCGCCGGATACCTCCGT
CACAGACCCTTCGTCAGTACAACGTCTCACCAGGACCTTGGAGCGCGTCA
CCCCGCTCAATGATGGCCCCTCGGTCACACTAAACATTGTGCAACGCGAG
ATTCGCACCATGGGCAAGCGCGTCATTTTCGAGTCTGGTGCCAATCGTCG
CGGTAGCTACATCAAGATCTCCGAGAATAACTTTCCGCAACGCACCTCTA
TCATTCTCCCTCACACAACCGTTCCCCAAATAATCGAACTTCTGCAGGAA
GTGGTACAGAGTGGAGACCCGGCCGAGGCATTGGAATCTGCCAAAGCCGC
CCAAACTTGA
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