Ggra4031.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4031.t1
Unique NameGgra4031.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:404154..405356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002673797.1
Preferred nameNT4
PFAMsNucleoside_tran
Max annot lvl2759|Eukaryota
KEGG koko:K15014
KEGG TC2.A.57.1
Evalue2.26e-24
EggNOG OGsKOG1479@1|root,KOG1479@2759|Eukaryota
Descriptionnucleoside transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4031Ggra4031Gracilaria gracilis GNS1m malegenetig00000908_pilon 404154..405356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4031.t1.stop1Ggra4031.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 404154..404156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4031.t1.CDS1Ggra4031.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 404154..405356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4031.t1.exon1Ggra4031.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 404154..405356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4031.t1.start1Ggra4031.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 405354..405356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4031.t1Ggra4031.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 404154..405356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4031.t1 ID=Ggra4031.t1|Name=Ggra4031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MDTNEDVEARMPLYASKTAAGSPDASPQQFYVTFFMLGLGTLLPWNAMIS
SLDYYATLHKHVPIAQYIANSYSAPLMASGLLPLTGVPFRTTVFVLMCFA
SLAAVTTVLPCVAHSVAATSLVVVFMGLCGGLLQSLLFGAANCFPGGVVT
TALNAGSGAASVVIVTLRILTRLTMGGEDTAESMKTGVRLFFAVCTFISI
ACLVMFRNLTKTHEYEAVPTTSSTQLTSAYETLQDIAEPATCLFLCFFGT
MMLFPGILTQLPAGLRDENFGSWFPLITVASFAFGDTAGRLLFSRELVLY
HPQALTWMSCVRLIVLPFHILQWIGGLPVTAMVAYGTVFFHGFLNGFIMN
MAFVHAPSKTSEDRCDTVGKLMFAMLISGIFLGSFAGWVLDWLLRSLNLL
*
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spliced messenger RNA

>Ggra4031.t1 ID=Ggra4031.t1|Name=Ggra4031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000908_pilon:404154..405356- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCAACGAAGACGTAGAAGCACGGATGCCCTTGTACGCCTCCAA
GACTGCAGCTGGCAGTCCAGATGCCTCCCCACAGCAGTTTTACGTCACCT
TTTTCATGCTTGGGTTGGGCACGCTTTTGCCGTGGAACGCGATGATTTCA
TCGCTCGATTACTATGCCACGCTCCACAAGCACGTTCCCATAGCTCAATA
TATAGCAAACTCCTACTCAGCACCACTCATGGCTTCTGGACTTCTTCCGC
TCACAGGCGTGCCGTTTCGAACCACCGTGTTTGTCCTCATGTGTTTCGCC
TCGCTCGCAGCTGTTACAACGGTGCTTCCGTGCGTCGCACACAGCGTGGC
AGCAACTTCACTTGTCGTGGTGTTCATGGGACTCTGCGGTGGCTTGCTAC
AGAGTTTGCTTTTTGGCGCGGCTAACTGTTTCCCCGGCGGCGTCGTAACC
ACTGCTTTAAACGCCGGTAGCGGCGCTGCCAGTGTGGTGATAGTCACCTT
GCGCATTCTAACACGGCTCACAATGGGTGGCGAAGATACCGCCGAGTCAA
TGAAGACGGGAGTTCGACTATTCTTCGCTGTGTGTACCTTTATAAGCATC
GCTTGTCTTGTCATGTTTCGTAATCTCACCAAGACACACGAATATGAGGC
AGTGCCAACTACGTCTTCAACTCAACTTACTTCCGCCTACGAAACGCTCC
AAGATATTGCAGAGCCGGCCACATGCCTATTTCTTTGTTTCTTCGGCACG
ATGATGCTCTTCCCAGGCATTTTGACTCAGCTACCTGCCGGACTTCGTGA
TGAGAATTTTGGATCTTGGTTTCCTCTTATTACTGTCGCTTCCTTCGCGT
TTGGAGATACAGCAGGGCGTTTACTGTTCTCACGGGAGCTCGTCCTTTAT
CATCCGCAAGCTCTCACTTGGATGAGTTGCGTCAGACTGATAGTGCTTCC
GTTTCACATTCTGCAATGGATTGGTGGACTACCGGTTACTGCCATGGTTG
CATACGGCACAGTTTTCTTCCATGGCTTCCTCAACGGCTTCATTATGAAC
ATGGCTTTTGTTCACGCTCCCAGCAAGACTTCTGAAGATCGATGTGACAC
TGTTGGCAAGCTGATGTTTGCGATGCTGATCTCTGGCATATTTCTTGGTA
GCTTTGCTGGTTGGGTACTTGACTGGCTTTTGCGATCGCTAAACCTCTTA
TAG
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protein sequence of Ggra4031.t1

>Ggra4031.t1 ID=Ggra4031.t1|Name=Ggra4031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MDTNEDVEARMPLYASKTAAGSPDASPQQFYVTFFMLGLGTLLPWNAMIS
SLDYYATLHKHVPIAQYIANSYSAPLMASGLLPLTGVPFRTTVFVLMCFA
SLAAVTTVLPCVAHSVAATSLVVVFMGLCGGLLQSLLFGAANCFPGGVVT
TALNAGSGAASVVIVTLRILTRLTMGGEDTAESMKTGVRLFFAVCTFISI
ACLVMFRNLTKTHEYEAVPTTSSTQLTSAYETLQDIAEPATCLFLCFFGT
MMLFPGILTQLPAGLRDENFGSWFPLITVASFAFGDTAGRLLFSRELVLY
HPQALTWMSCVRLIVLPFHILQWIGGLPVTAMVAYGTVFFHGFLNGFIMN
MAFVHAPSKTSEDRCDTVGKLMFAMLISGIFLGSFAGWVLDWLLRSLNLL
*
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mRNA from alignment at tig00000908_pilon:404154..405356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4031.t1 ID=Ggra4031.t1|Name=Ggra4031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000908_pilon:404154..405356- (Gracilaria gracilis GNS1m male)
ATGGATACCAACGAAGACGTAGAAGCACGGATGCCCTTGTACGCCTCCAA
GACTGCAGCTGGCAGTCCAGATGCCTCCCCACAGCAGTTTTACGTCACCT
TTTTCATGCTTGGGTTGGGCACGCTTTTGCCGTGGAACGCGATGATTTCA
TCGCTCGATTACTATGCCACGCTCCACAAGCACGTTCCCATAGCTCAATA
TATAGCAAACTCCTACTCAGCACCACTCATGGCTTCTGGACTTCTTCCGC
TCACAGGCGTGCCGTTTCGAACCACCGTGTTTGTCCTCATGTGTTTCGCC
TCGCTCGCAGCTGTTACAACGGTGCTTCCGTGCGTCGCACACAGCGTGGC
AGCAACTTCACTTGTCGTGGTGTTCATGGGACTCTGCGGTGGCTTGCTAC
AGAGTTTGCTTTTTGGCGCGGCTAACTGTTTCCCCGGCGGCGTCGTAACC
ACTGCTTTAAACGCCGGTAGCGGCGCTGCCAGTGTGGTGATAGTCACCTT
GCGCATTCTAACACGGCTCACAATGGGTGGCGAAGATACCGCCGAGTCAA
TGAAGACGGGAGTTCGACTATTCTTCGCTGTGTGTACCTTTATAAGCATC
GCTTGTCTTGTCATGTTTCGTAATCTCACCAAGACACACGAATATGAGGC
AGTGCCAACTACGTCTTCAACTCAACTTACTTCCGCCTACGAAACGCTCC
AAGATATTGCAGAGCCGGCCACATGCCTATTTCTTTGTTTCTTCGGCACG
ATGATGCTCTTCCCAGGCATTTTGACTCAGCTACCTGCCGGACTTCGTGA
TGAGAATTTTGGATCTTGGTTTCCTCTTATTACTGTCGCTTCCTTCGCGT
TTGGAGATACAGCAGGGCGTTTACTGTTCTCACGGGAGCTCGTCCTTTAT
CATCCGCAAGCTCTCACTTGGATGAGTTGCGTCAGACTGATAGTGCTTCC
GTTTCACATTCTGCAATGGATTGGTGGACTACCGGTTACTGCCATGGTTG
CATACGGCACAGTTTTCTTCCATGGCTTCCTCAACGGCTTCATTATGAAC
ATGGCTTTTGTTCACGCTCCCAGCAAGACTTCTGAAGATCGATGTGACAC
TGTTGGCAAGCTGATGTTTGCGATGCTGATCTCTGGCATATTTCTTGGTA
GCTTTGCTGGTTGGGTACTTGACTGGCTTTTGCGATCGCTAAACCTCTTA
TAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:404154..405356-

>Ggra4031.t1 ID=Ggra4031.t1|Name=Ggra4031.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000908_pilon:404154..405356- (Gracilaria gracilis GNS1m male)
ATGGATACCAACGAAGACGTAGAAGCACGGATGCCCTTGTACGCCTCCAA
GACTGCAGCTGGCAGTCCAGATGCCTCCCCACAGCAGTTTTACGTCACCT
TTTTCATGCTTGGGTTGGGCACGCTTTTGCCGTGGAACGCGATGATTTCA
TCGCTCGATTACTATGCCACGCTCCACAAGCACGTTCCCATAGCTCAATA
TATAGCAAACTCCTACTCAGCACCACTCATGGCTTCTGGACTTCTTCCGC
TCACAGGCGTGCCGTTTCGAACCACCGTGTTTGTCCTCATGTGTTTCGCC
TCGCTCGCAGCTGTTACAACGGTGCTTCCGTGCGTCGCACACAGCGTGGC
AGCAACTTCACTTGTCGTGGTGTTCATGGGACTCTGCGGTGGCTTGCTAC
AGAGTTTGCTTTTTGGCGCGGCTAACTGTTTCCCCGGCGGCGTCGTAACC
ACTGCTTTAAACGCCGGTAGCGGCGCTGCCAGTGTGGTGATAGTCACCTT
GCGCATTCTAACACGGCTCACAATGGGTGGCGAAGATACCGCCGAGTCAA
TGAAGACGGGAGTTCGACTATTCTTCGCTGTGTGTACCTTTATAAGCATC
GCTTGTCTTGTCATGTTTCGTAATCTCACCAAGACACACGAATATGAGGC
AGTGCCAACTACGTCTTCAACTCAACTTACTTCCGCCTACGAAACGCTCC
AAGATATTGCAGAGCCGGCCACATGCCTATTTCTTTGTTTCTTCGGCACG
ATGATGCTCTTCCCAGGCATTTTGACTCAGCTACCTGCCGGACTTCGTGA
TGAGAATTTTGGATCTTGGTTTCCTCTTATTACTGTCGCTTCCTTCGCGT
TTGGAGATACAGCAGGGCGTTTACTGTTCTCACGGGAGCTCGTCCTTTAT
CATCCGCAAGCTCTCACTTGGATGAGTTGCGTCAGACTGATAGTGCTTCC
GTTTCACATTCTGCAATGGATTGGTGGACTACCGGTTACTGCCATGGTTG
CATACGGCACAGTTTTCTTCCATGGCTTCCTCAACGGCTTCATTATGAAC
ATGGCTTTTGTTCACGCTCCCAGCAAGACTTCTGAAGATCGATGTGACAC
TGTTGGCAAGCTGATGTTTGCGATGCTGATCTCTGGCATATTTCTTGGTA
GCTTTGCTGGTTGGGTACTTGACTGGCTTTTGCGATCGCTAAACCTCTTA
TAG
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