Ggra4030.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4030.t1
Unique NameGgra4030.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:401678..403092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003059256.1
PFAMsPyr_redox_2
Max annot lvl3041|Chlorophyta
Evalue1.91e-47
EggNOG OGsCOG1252@1|root,KOG2495@2759|Eukaryota,37IIY@33090|Viridiplantae,34I5V@3041|Chlorophyta
DescriptionPyridine nucleotide-disulphide oxidoreductase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4030Ggra4030Gracilaria gracilis GNS1m malegenetig00000908_pilon 401678..403092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1Ggra4030.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 401678..403092 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1.start1Ggra4030.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 401678..401680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1.CDS1Ggra4030.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 401678..402126 +
Ggra4030.t1.CDS2Ggra4030.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 402228..403092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1.exon1Ggra4030.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 401678..402126 +
Ggra4030.t1.exon2Ggra4030.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 402228..403092 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1.intron1Ggra4030.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 402127..402227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4030.t1.stop1Ggra4030.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 403090..403092 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4030.t1 ID=Ggra4030.t1|Name=Ggra4030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MPTPMKPTVLVVGGGFAGRAAVRTLDGHGDKFRVIYVDEKPFFEFTPSIL
RCIVQPAHLHKVTFAHDESDDRRFAVGRVTLITPSEATIKRRDDNRITYI
SVPFDYCIWATGVSFSQPIRSGHTYEEVCTVQKRQFELERYRAKCAAARE
ILVVGGGPAGVELSAELTSLLKTQPTTRITLACSPRGLLPRLPERAGKFA
AKWLSQNGVHIIYSRLIPDEVDGEGNLRYVSESDPSIVVRAEVVFDCCGA
KSNGAADALVAGGVVDPKFIRTDGSISTQNTLQMWDVPHFFVAGDAGFVH
GELDLEGLACEKTAYAAEESGKLAALNLLRMMRGERLLSRPLTTMKQYPS
GVFPFGDFPRLFVVSLYKYSGILCLGPLVVCGLLPAIIKVAIEFLGVQSA
RVNGFWSFIFRNVEYITYFIVGLVQRAPKAPNRPAVD*
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spliced messenger RNA

>Ggra4030.t1 ID=Ggra4030.t1|Name=Ggra4030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000908_pilon:401678..403092+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACTCCGATGAAACCAACAGTGCTGGTGGTTGGCGGGGGATTCGC
AGGTAGGGCGGCAGTTCGAACTCTTGATGGGCATGGAGATAAGTTCCGGG
TTATCTACGTTGATGAGAAGCCATTTTTTGAGTTCACACCTTCCATACTG
AGATGCATTGTTCAGCCAGCACATCTGCACAAGGTTACCTTTGCACACGA
CGAATCAGACGATAGACGGTTTGCTGTTGGACGAGTGACCTTAATAACTC
CTTCCGAAGCCACAATCAAGCGACGAGACGACAACCGTATCACCTACATT
TCAGTTCCCTTTGATTACTGTATTTGGGCGACGGGGGTGTCTTTCTCTCA
ACCCATCCGTTCTGGTCACACTTACGAAGAAGTCTGCACGGTTCAGAAAC
GGCAATTTGAGCTAGAGAGATACCGTGCGAAATGCGCTGCCGCTAGAGAA
ATCCTTGTTGTTGGAGGGGGGCCGGCCGGGGTGGAGCTAAGTGCAGAACT
AACGTCCCTGCTGAAAACTCAACCCACTACTCGGATAACTTTAGCATGTT
CGCCAAGGGGGTTGCTTCCACGTCTTCCCGAAAGAGCTGGGAAGTTTGCT
GCGAAGTGGCTTTCCCAAAACGGAGTGCATATAATCTATTCGCGTCTCAT
ACCAGACGAGGTTGATGGCGAGGGTAACTTGCGATACGTATCTGAATCGG
ATCCATCTATTGTGGTGCGCGCAGAAGTTGTGTTTGACTGTTGCGGTGCA
AAGTCAAATGGCGCAGCAGACGCTCTTGTAGCGGGTGGAGTTGTAGATCC
TAAATTCATTCGCACAGATGGGTCAATATCAACCCAAAACACTCTGCAAA
TGTGGGACGTCCCGCACTTTTTTGTGGCAGGAGATGCTGGTTTCGTACAT
GGAGAACTAGATCTGGAAGGTCTAGCATGTGAGAAGACGGCGTACGCCGC
CGAGGAGTCTGGGAAGTTGGCAGCTCTGAACCTGTTGAGAATGATGCGAG
GTGAACGTCTGCTTTCTCGGCCATTGACAACGATGAAGCAATACCCAAGT
GGCGTCTTCCCGTTTGGCGACTTTCCTCGGTTGTTTGTCGTCAGTTTATA
TAAGTACAGCGGGATTCTCTGTTTAGGCCCATTGGTTGTTTGCGGCTTGC
TTCCAGCTATTATCAAGGTTGCCATAGAGTTTCTTGGTGTTCAGTCTGCC
CGTGTGAATGGTTTTTGGTCTTTCATCTTTCGCAATGTGGAATACATCAC
GTACTTCATTGTCGGTCTCGTTCAGCGTGCTCCCAAGGCGCCGAATCGCC
CCGCTGTGGATTAG
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protein sequence of Ggra4030.t1

>Ggra4030.t1 ID=Ggra4030.t1|Name=Ggra4030.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MPTPMKPTVLVVGGGFAGRAAVRTLDGHGDKFRVIYVDEKPFFEFTPSIL
RCIVQPAHLHKVTFAHDESDDRRFAVGRVTLITPSEATIKRRDDNRITYI
SVPFDYCIWATGVSFSQPIRSGHTYEEVCTVQKRQFELERYRAKCAAARE
ILVVGGGPAGVELSAELTSLLKTQPTTRITLACSPRGLLPRLPERAGKFA
AKWLSQNGVHIIYSRLIPDEVDGEGNLRYVSESDPSIVVRAEVVFDCCGA
KSNGAADALVAGGVVDPKFIRTDGSISTQNTLQMWDVPHFFVAGDAGFVH
GELDLEGLACEKTAYAAEESGKLAALNLLRMMRGERLLSRPLTTMKQYPS
GVFPFGDFPRLFVVSLYKYSGILCLGPLVVCGLLPAIIKVAIEFLGVQSA
RVNGFWSFIFRNVEYITYFIVGLVQRAPKAPNRPAVD*
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mRNA from alignment at tig00000908_pilon:401678..403092+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4030.t1 ID=Ggra4030.t1|Name=Ggra4030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1415bp|location=Sequence derived from alignment at tig00000908_pilon:401678..403092+ (Gracilaria gracilis GNS1m male)
ATGCCAACTCCGATGAAACCAACAGTGCTGGTGGTTGGCGGGGGATTCGC
AGGTAGGGCGGCAGTTCGAACTCTTGATGGGCATGGAGATAAGTTCCGGG
TTATCTACGTTGATGAGAAGCCATTTTTTGAGTTCACACCTTCCATACTG
AGATGCATTGTTCAGCCAGCACATCTGCACAAGGTTACCTTTGCACACGA
CGAATCAGACGATAGACGGTTTGCTGTTGGACGAGTGACCTTAATAACTC
CTTCCGAAGCCACAATCAAGCGACGAGACGACAACCGTATCACCTACATT
TCAGTTCCCTTTGATTACTGTATTTGGGCGACGGGGGTGTCTTTCTCTCA
ACCCATCCGTTCTGGTCACACTTACGAAGAAGTCTGCACGGTTCAGAAAC
GGCAATTTGAGCTAGAGAGATACCGTGCGAAATGCGCTGCCGCTAGAGAG
TATGTGTGTGTATCTCGAAGACTACCAAGCAATGCAAATTCAACGAATAT
GGCAAGTGTAGGGCACTGACAACCGTTTCTTCATCTTCTCATCCGAACAG
AATCCTTGTTGTTGGAGGGGGGCCGGCCGGGGTGGAGCTAAGTGCAGAAC
TAACGTCCCTGCTGAAAACTCAACCCACTACTCGGATAACTTTAGCATGT
TCGCCAAGGGGGTTGCTTCCACGTCTTCCCGAAAGAGCTGGGAAGTTTGC
TGCGAAGTGGCTTTCCCAAAACGGAGTGCATATAATCTATTCGCGTCTCA
TACCAGACGAGGTTGATGGCGAGGGTAACTTGCGATACGTATCTGAATCG
GATCCATCTATTGTGGTGCGCGCAGAAGTTGTGTTTGACTGTTGCGGTGC
AAAGTCAAATGGCGCAGCAGACGCTCTTGTAGCGGGTGGAGTTGTAGATC
CTAAATTCATTCGCACAGATGGGTCAATATCAACCCAAAACACTCTGCAA
ATGTGGGACGTCCCGCACTTTTTTGTGGCAGGAGATGCTGGTTTCGTACA
TGGAGAACTAGATCTGGAAGGTCTAGCATGTGAGAAGACGGCGTACGCCG
CCGAGGAGTCTGGGAAGTTGGCAGCTCTGAACCTGTTGAGAATGATGCGA
GGTGAACGTCTGCTTTCTCGGCCATTGACAACGATGAAGCAATACCCAAG
TGGCGTCTTCCCGTTTGGCGACTTTCCTCGGTTGTTTGTCGTCAGTTTAT
ATAAGTACAGCGGGATTCTCTGTTTAGGCCCATTGGTTGTTTGCGGCTTG
CTTCCAGCTATTATCAAGGTTGCCATAGAGTTTCTTGGTGTTCAGTCTGC
CCGTGTGAATGGTTTTTGGTCTTTCATCTTTCGCAATGTGGAATACATCA
CGTACTTCATTGTCGGTCTCGTTCAGCGTGCTCCCAAGGCGCCGAATCGC
CCCGCTGTGGATTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:401678..403092+

>Ggra4030.t1 ID=Ggra4030.t1|Name=Ggra4030.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000908_pilon:401678..403092+ (Gracilaria gracilis GNS1m male)
ATGCCAACTCCGATGAAACCAACAGTGCTGGTGGTTGGCGGGGGATTCGC
AGGTAGGGCGGCAGTTCGAACTCTTGATGGGCATGGAGATAAGTTCCGGG
TTATCTACGTTGATGAGAAGCCATTTTTTGAGTTCACACCTTCCATACTG
AGATGCATTGTTCAGCCAGCACATCTGCACAAGGTTACCTTTGCACACGA
CGAATCAGACGATAGACGGTTTGCTGTTGGACGAGTGACCTTAATAACTC
CTTCCGAAGCCACAATCAAGCGACGAGACGACAACCGTATCACCTACATT
TCAGTTCCCTTTGATTACTGTATTTGGGCGACGGGGGTGTCTTTCTCTCA
ACCCATCCGTTCTGGTCACACTTACGAAGAAGTCTGCACGGTTCAGAAAC
GGCAATTTGAGCTAGAGAGATACCGTGCGAAATGCGCTGCCGCTAGAGAA
ATCCTTGTTGTTGGAGGGGGGCCGGCCGGGGTGGAGCTAAGTGCAGAACT
AACGTCCCTGCTGAAAACTCAACCCACTACTCGGATAACTTTAGCATGTT
CGCCAAGGGGGTTGCTTCCACGTCTTCCCGAAAGAGCTGGGAAGTTTGCT
GCGAAGTGGCTTTCCCAAAACGGAGTGCATATAATCTATTCGCGTCTCAT
ACCAGACGAGGTTGATGGCGAGGGTAACTTGCGATACGTATCTGAATCGG
ATCCATCTATTGTGGTGCGCGCAGAAGTTGTGTTTGACTGTTGCGGTGCA
AAGTCAAATGGCGCAGCAGACGCTCTTGTAGCGGGTGGAGTTGTAGATCC
TAAATTCATTCGCACAGATGGGTCAATATCAACCCAAAACACTCTGCAAA
TGTGGGACGTCCCGCACTTTTTTGTGGCAGGAGATGCTGGTTTCGTACAT
GGAGAACTAGATCTGGAAGGTCTAGCATGTGAGAAGACGGCGTACGCCGC
CGAGGAGTCTGGGAAGTTGGCAGCTCTGAACCTGTTGAGAATGATGCGAG
GTGAACGTCTGCTTTCTCGGCCATTGACAACGATGAAGCAATACCCAAGT
GGCGTCTTCCCGTTTGGCGACTTTCCTCGGTTGTTTGTCGTCAGTTTATA
TAAGTACAGCGGGATTCTCTGTTTAGGCCCATTGGTTGTTTGCGGCTTGC
TTCCAGCTATTATCAAGGTTGCCATAGAGTTTCTTGGTGTTCAGTCTGCC
CGTGTGAATGGTTTTTGGTCTTTCATCTTTCGCAATGTGGAATACATCAC
GTACTTCATTGTCGGTCTCGTTCAGCGTGCTCCCAAGGCGCCGAATCGCC
CCGCTGTGGATTAG
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