Ggra4026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4026.t1
Unique NameGgra4026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length596
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:393414..395201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706775.1
Preferred nameNAD-ME
PFAMsMalic_M,malic
Max annot lvl2759|Eukaryota
KEGG rclassRC00105
KEGG koko:K00028,ko:K00029,ko:K13117
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00355
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004470,GO:0004471,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006090,GO:0006108,GO:0006950,GO:0006970,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0017076,GO:0019752,GO:0030554,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046983,GO:0050896,GO:0050897,GO:0055114,GO:0070013,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue1.53e-198
EggNOG OGsCOG0281@1|root,KOG1257@2759|Eukaryota
EC1.1.1.39,1.1.1.40,3.6.4.13
Descriptionmalate dehydrogenase (decarboxylating) (NAD ) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4026Ggra4026Gracilaria gracilis GNS1m malegenetig00000908_pilon 393414..395201 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4026.t1.start1Ggra4026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 393414..393416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4026.t1.CDS1Ggra4026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 393414..395201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4026.t1.exon1Ggra4026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 393414..395201 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4026.t1.stop1Ggra4026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 395199..395201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4026.t1Ggra4026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 393414..395201 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4026.t1 ID=Ggra4026.t1|Name=Ggra4026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp
MLPSSARRVAAHSWRPCGRRALSRARRACHNDADRSDEMLMTSNRRLSVI
HDPSLNRGTAFSQSERERLLLRGLVPPRQQPLHHQVKRVMQTYRTQRTNM
DKFQFLSLLMDRNTVLFYRCLLDHFEELAPIVYTPVVGEACLKFHAIYRR
TRGMYFSVDDRAHFRTMVYNWPKDQVDVIVVTDGSRVLSLGDLGCNSMNI
PIGKLSLYVSAAGISPSKTLPIVLDVGTDNLALRENPLYLGLNRERLRGK
QYYDLLDEWISAIRHRWPNTLIQFEDFASEPAETLLERYRVASAPCFNDD
IQSTGCIAIAALLSSLRARGLDMSDVHRERIVCVGAGSAGVGVCEGLVQA
MQYYGMSAHDAYDKFYMLDERGLLARGRSVSGARARFVRHDLSDGMSLFD
VVSRVQPTVLLGLSGVGGLFTEKVVREMARHVDQPVIFAMSNPSSSSECT
PEQAFSWTDGRALVATGSPFANVALKDGRTGYSNQANNVYSFPGMGLAVT
VARISCVTDEMFLAAGRRIAQLSSEQHVKKGILFPPVTELREVSAQIAAA
VVFVARAAGLVRRRLPDESWQSHESMVAYIKTQMWEPKYGHLVAQ*
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spliced messenger RNA

>Ggra4026.t1 ID=Ggra4026.t1|Name=Ggra4026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000908_pilon:393414..395201+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGTCCTCCGCGCGTCGCGTCGCCGCGCACAGCTGGCGGCCATG
TGGCCGCCGCGCGCTGTCCCGCGCGCGCCGTGCGTGTCACAACGACGCCG
ACCGCTCCGACGAGATGCTCATGACCTCCAACAGGAGGCTGTCCGTCATC
CACGACCCGTCGCTTAACAGGGGCACCGCCTTCTCGCAGTCCGAGCGCGA
GCGCCTGCTACTGCGCGGGCTGGTGCCGCCGCGACAGCAGCCGTTGCACC
ATCAGGTGAAGCGCGTCATGCAGACGTACCGCACGCAGCGCACCAACATG
GACAAGTTTCAGTTCTTGTCGCTGCTCATGGATCGTAACACCGTGCTCTT
CTACCGCTGTCTGCTCGATCACTTCGAAGAGCTGGCGCCCATCGTGTACA
CCCCCGTGGTGGGCGAGGCCTGTCTCAAATTCCACGCCATCTACCGCCGC
ACGCGCGGCATGTACTTCTCCGTGGATGATCGCGCCCACTTCCGCACCAT
GGTGTACAACTGGCCAAAGGACCAAGTGGACGTCATCGTCGTCACGGACG
GGTCGCGCGTGCTGTCGCTAGGCGATCTGGGCTGCAACTCCATGAACATC
CCCATCGGAAAGCTCTCGCTGTACGTGTCAGCCGCCGGCATAAGCCCTTC
CAAGACGCTGCCCATCGTGTTGGACGTCGGCACCGACAACCTCGCGCTTC
GCGAAAACCCGCTCTACCTCGGCCTCAATCGCGAACGACTACGTGGTAAA
CAGTATTACGACCTGCTAGACGAGTGGATATCCGCCATCCGTCACCGCTG
GCCAAACACGCTCATCCAGTTCGAAGACTTTGCCAGCGAGCCAGCCGAAA
CGCTCCTCGAGCGCTATCGCGTGGCAAGCGCGCCCTGTTTCAACGACGAC
ATCCAGTCCACCGGTTGCATCGCCATCGCCGCACTGCTCTCCTCGCTGCG
CGCGCGCGGGCTCGACATGAGCGACGTGCACCGCGAACGCATCGTGTGCG
TGGGCGCCGGCTCCGCCGGCGTGGGCGTGTGCGAAGGGTTGGTACAAGCG
ATGCAGTACTACGGCATGTCTGCGCACGACGCGTACGACAAGTTCTACAT
GCTTGACGAACGCGGGCTGCTGGCGCGCGGTCGCAGCGTGAGCGGAGCGC
GCGCACGCTTTGTGCGCCACGACCTGAGCGACGGAATGAGCCTGTTCGAC
GTGGTGAGTCGCGTGCAGCCGACGGTGCTGCTGGGGTTGTCCGGCGTGGG
CGGGCTGTTCACGGAGAAGGTGGTGAGAGAAATGGCGAGACATGTGGATC
AGCCTGTGATTTTCGCGATGAGCAATCCGTCGTCGTCCAGCGAATGCACG
CCGGAACAGGCGTTCAGCTGGACGGACGGGCGCGCGCTGGTAGCAACCGG
ATCGCCGTTCGCCAACGTGGCGCTCAAAGACGGGCGCACGGGCTACAGCA
ACCAGGCCAACAACGTGTACTCGTTCCCCGGCATGGGGCTGGCCGTCACC
GTGGCGCGCATCTCGTGCGTCACCGACGAGATGTTCCTGGCCGCAGGGCG
ACGAATCGCGCAGCTGTCGAGCGAACAGCACGTGAAGAAGGGCATTCTGT
TCCCGCCCGTCACCGAGCTGCGCGAGGTGAGCGCGCAGATTGCGGCCGCT
GTGGTGTTCGTGGCGCGCGCAGCGGGGCTGGTGAGACGACGACTGCCGGA
CGAGTCGTGGCAGTCGCACGAGAGTATGGTGGCCTACATCAAGACGCAGA
TGTGGGAGCCCAAGTACGGCCACCTCGTGGCGCAGTAA
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protein sequence of Ggra4026.t1

>Ggra4026.t1 ID=Ggra4026.t1|Name=Ggra4026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=596bp
MLPSSARRVAAHSWRPCGRRALSRARRACHNDADRSDEMLMTSNRRLSVI
HDPSLNRGTAFSQSERERLLLRGLVPPRQQPLHHQVKRVMQTYRTQRTNM
DKFQFLSLLMDRNTVLFYRCLLDHFEELAPIVYTPVVGEACLKFHAIYRR
TRGMYFSVDDRAHFRTMVYNWPKDQVDVIVVTDGSRVLSLGDLGCNSMNI
PIGKLSLYVSAAGISPSKTLPIVLDVGTDNLALRENPLYLGLNRERLRGK
QYYDLLDEWISAIRHRWPNTLIQFEDFASEPAETLLERYRVASAPCFNDD
IQSTGCIAIAALLSSLRARGLDMSDVHRERIVCVGAGSAGVGVCEGLVQA
MQYYGMSAHDAYDKFYMLDERGLLARGRSVSGARARFVRHDLSDGMSLFD
VVSRVQPTVLLGLSGVGGLFTEKVVREMARHVDQPVIFAMSNPSSSSECT
PEQAFSWTDGRALVATGSPFANVALKDGRTGYSNQANNVYSFPGMGLAVT
VARISCVTDEMFLAAGRRIAQLSSEQHVKKGILFPPVTELREVSAQIAAA
VVFVARAAGLVRRRLPDESWQSHESMVAYIKTQMWEPKYGHLVAQ*
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mRNA from alignment at tig00000908_pilon:393414..395201+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4026.t1 ID=Ggra4026.t1|Name=Ggra4026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000908_pilon:393414..395201+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGTCCTCCGCGCGTCGCGTCGCCGCGCACAGCTGGCGGCCATG
TGGCCGCCGCGCGCTGTCCCGCGCGCGCCGTGCGTGTCACAACGACGCCG
ACCGCTCCGACGAGATGCTCATGACCTCCAACAGGAGGCTGTCCGTCATC
CACGACCCGTCGCTTAACAGGGGCACCGCCTTCTCGCAGTCCGAGCGCGA
GCGCCTGCTACTGCGCGGGCTGGTGCCGCCGCGACAGCAGCCGTTGCACC
ATCAGGTGAAGCGCGTCATGCAGACGTACCGCACGCAGCGCACCAACATG
GACAAGTTTCAGTTCTTGTCGCTGCTCATGGATCGTAACACCGTGCTCTT
CTACCGCTGTCTGCTCGATCACTTCGAAGAGCTGGCGCCCATCGTGTACA
CCCCCGTGGTGGGCGAGGCCTGTCTCAAATTCCACGCCATCTACCGCCGC
ACGCGCGGCATGTACTTCTCCGTGGATGATCGCGCCCACTTCCGCACCAT
GGTGTACAACTGGCCAAAGGACCAAGTGGACGTCATCGTCGTCACGGACG
GGTCGCGCGTGCTGTCGCTAGGCGATCTGGGCTGCAACTCCATGAACATC
CCCATCGGAAAGCTCTCGCTGTACGTGTCAGCCGCCGGCATAAGCCCTTC
CAAGACGCTGCCCATCGTGTTGGACGTCGGCACCGACAACCTCGCGCTTC
GCGAAAACCCGCTCTACCTCGGCCTCAATCGCGAACGACTACGTGGTAAA
CAGTATTACGACCTGCTAGACGAGTGGATATCCGCCATCCGTCACCGCTG
GCCAAACACGCTCATCCAGTTCGAAGACTTTGCCAGCGAGCCAGCCGAAA
CGCTCCTCGAGCGCTATCGCGTGGCAAGCGCGCCCTGTTTCAACGACGAC
ATCCAGTCCACCGGTTGCATCGCCATCGCCGCACTGCTCTCCTCGCTGCG
CGCGCGCGGGCTCGACATGAGCGACGTGCACCGCGAACGCATCGTGTGCG
TGGGCGCCGGCTCCGCCGGCGTGGGCGTGTGCGAAGGGTTGGTACAAGCG
ATGCAGTACTACGGCATGTCTGCGCACGACGCGTACGACAAGTTCTACAT
GCTTGACGAACGCGGGCTGCTGGCGCGCGGTCGCAGCGTGAGCGGAGCGC
GCGCACGCTTTGTGCGCCACGACCTGAGCGACGGAATGAGCCTGTTCGAC
GTGGTGAGTCGCGTGCAGCCGACGGTGCTGCTGGGGTTGTCCGGCGTGGG
CGGGCTGTTCACGGAGAAGGTGGTGAGAGAAATGGCGAGACATGTGGATC
AGCCTGTGATTTTCGCGATGAGCAATCCGTCGTCGTCCAGCGAATGCACG
CCGGAACAGGCGTTCAGCTGGACGGACGGGCGCGCGCTGGTAGCAACCGG
ATCGCCGTTCGCCAACGTGGCGCTCAAAGACGGGCGCACGGGCTACAGCA
ACCAGGCCAACAACGTGTACTCGTTCCCCGGCATGGGGCTGGCCGTCACC
GTGGCGCGCATCTCGTGCGTCACCGACGAGATGTTCCTGGCCGCAGGGCG
ACGAATCGCGCAGCTGTCGAGCGAACAGCACGTGAAGAAGGGCATTCTGT
TCCCGCCCGTCACCGAGCTGCGCGAGGTGAGCGCGCAGATTGCGGCCGCT
GTGGTGTTCGTGGCGCGCGCAGCGGGGCTGGTGAGACGACGACTGCCGGA
CGAGTCGTGGCAGTCGCACGAGAGTATGGTGGCCTACATCAAGACGCAGA
TGTGGGAGCCCAAGTACGGCCACCTCGTGGCGCAGTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:393414..395201+

>Ggra4026.t1 ID=Ggra4026.t1|Name=Ggra4026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000908_pilon:393414..395201+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGTCCTCCGCGCGTCGCGTCGCCGCGCACAGCTGGCGGCCATG
TGGCCGCCGCGCGCTGTCCCGCGCGCGCCGTGCGTGTCACAACGACGCCG
ACCGCTCCGACGAGATGCTCATGACCTCCAACAGGAGGCTGTCCGTCATC
CACGACCCGTCGCTTAACAGGGGCACCGCCTTCTCGCAGTCCGAGCGCGA
GCGCCTGCTACTGCGCGGGCTGGTGCCGCCGCGACAGCAGCCGTTGCACC
ATCAGGTGAAGCGCGTCATGCAGACGTACCGCACGCAGCGCACCAACATG
GACAAGTTTCAGTTCTTGTCGCTGCTCATGGATCGTAACACCGTGCTCTT
CTACCGCTGTCTGCTCGATCACTTCGAAGAGCTGGCGCCCATCGTGTACA
CCCCCGTGGTGGGCGAGGCCTGTCTCAAATTCCACGCCATCTACCGCCGC
ACGCGCGGCATGTACTTCTCCGTGGATGATCGCGCCCACTTCCGCACCAT
GGTGTACAACTGGCCAAAGGACCAAGTGGACGTCATCGTCGTCACGGACG
GGTCGCGCGTGCTGTCGCTAGGCGATCTGGGCTGCAACTCCATGAACATC
CCCATCGGAAAGCTCTCGCTGTACGTGTCAGCCGCCGGCATAAGCCCTTC
CAAGACGCTGCCCATCGTGTTGGACGTCGGCACCGACAACCTCGCGCTTC
GCGAAAACCCGCTCTACCTCGGCCTCAATCGCGAACGACTACGTGGTAAA
CAGTATTACGACCTGCTAGACGAGTGGATATCCGCCATCCGTCACCGCTG
GCCAAACACGCTCATCCAGTTCGAAGACTTTGCCAGCGAGCCAGCCGAAA
CGCTCCTCGAGCGCTATCGCGTGGCAAGCGCGCCCTGTTTCAACGACGAC
ATCCAGTCCACCGGTTGCATCGCCATCGCCGCACTGCTCTCCTCGCTGCG
CGCGCGCGGGCTCGACATGAGCGACGTGCACCGCGAACGCATCGTGTGCG
TGGGCGCCGGCTCCGCCGGCGTGGGCGTGTGCGAAGGGTTGGTACAAGCG
ATGCAGTACTACGGCATGTCTGCGCACGACGCGTACGACAAGTTCTACAT
GCTTGACGAACGCGGGCTGCTGGCGCGCGGTCGCAGCGTGAGCGGAGCGC
GCGCACGCTTTGTGCGCCACGACCTGAGCGACGGAATGAGCCTGTTCGAC
GTGGTGAGTCGCGTGCAGCCGACGGTGCTGCTGGGGTTGTCCGGCGTGGG
CGGGCTGTTCACGGAGAAGGTGGTGAGAGAAATGGCGAGACATGTGGATC
AGCCTGTGATTTTCGCGATGAGCAATCCGTCGTCGTCCAGCGAATGCACG
CCGGAACAGGCGTTCAGCTGGACGGACGGGCGCGCGCTGGTAGCAACCGG
ATCGCCGTTCGCCAACGTGGCGCTCAAAGACGGGCGCACGGGCTACAGCA
ACCAGGCCAACAACGTGTACTCGTTCCCCGGCATGGGGCTGGCCGTCACC
GTGGCGCGCATCTCGTGCGTCACCGACGAGATGTTCCTGGCCGCAGGGCG
ACGAATCGCGCAGCTGTCGAGCGAACAGCACGTGAAGAAGGGCATTCTGT
TCCCGCCCGTCACCGAGCTGCGCGAGGTGAGCGCGCAGATTGCGGCCGCT
GTGGTGTTCGTGGCGCGCGCAGCGGGGCTGGTGAGACGACGACTGCCGGA
CGAGTCGTGGCAGTCGCACGAGAGTATGGTGGCCTACATCAAGACGCAGA
TGTGGGAGCCCAAGTACGGCCACCTCGTGGCGCAGTAA
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