Ggra4023.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4023.t1
Unique NameGgra4023.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:372642..374054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI091CT
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Evalue2.8e-229
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4023Ggra4023Gracilaria gracilis GNS1m malegenetig00000908_pilon 372642..374054 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4023.t1.start1Ggra4023.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 372642..372644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4023.t1.CDS1Ggra4023.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 372642..374054 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4023.t1.exon1Ggra4023.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 372642..374054 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4023.t1.stop1Ggra4023.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 374052..374054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4023.t1Ggra4023.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 372642..374054 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4023.t1 ID=Ggra4023.t1|Name=Ggra4023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp
MVISRPKPLTGNTPLREQDPEMHRLLELEKARQWRGLELIASENFTSAAV
LQCLGSVFTNKYSEGYPGVRYYGGNEVVDQVEELCRRRALEAFSLDSDTW
GVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGFYTPKKRVS
ATSIYFESLPYVVDDTTGRIDYDDLERRARAFRPKLIIAGGSAYAREWDY
ERFRQIADQSGAYLLVDMAHISGLVATDVACRPFEYADVVTSTTHKSLRG
PRSGIIFFRKKALAAIGDGVNMEAAINGAVFPSLQGGPHNHQIAALAVQL
KEVASEPFRTYSKQVVSNARAMADQLMKHDYKLVTDGTDNHLVLWDLRPS
GFSGSKAQLLFDKCSITLNKNAVHGDKSALNPGGVRLGTPALTSRGFVED
DFRKVADFLDRGVKIGLQIQEKTGKKLVDFKPAIENHPDLEALRKDVEVF
ASSFDIPGFDVDQMDYNQLN*
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spliced messenger RNA

>Ggra4023.t1 ID=Ggra4023.t1|Name=Ggra4023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000908_pilon:372642..374054+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATCTCGCGCCCCAAGCCGCTCACGGGCAATACGCCGCTGCGCGA
GCAGGACCCCGAGATGCACCGGCTGCTGGAGCTGGAGAAGGCGCGCCAGT
GGCGCGGGCTCGAGCTCATCGCGTCGGAGAACTTCACCTCCGCCGCCGTG
CTGCAGTGTCTTGGCTCCGTCTTCACCAACAAGTACTCGGAGGGCTACCC
AGGCGTGCGCTACTACGGCGGAAACGAGGTCGTCGACCAGGTGGAGGAGC
TGTGTCGTCGCCGCGCTCTCGAAGCGTTTTCGCTGGACTCGGACACCTGG
GGCGTCAACGTGCAGCCGTATTCCGGGTCGCCCGCTAACTTTGCGGCCTA
CACCGCGCTGCTCAACCCGCACGACCGCATCATGGGGCTGGATTTGCCCA
GTGGCGGCCATTTGACGCACGGCTTTTACACGCCGAAGAAGCGCGTGTCG
GCCACCAGCATCTACTTTGAGAGCCTGCCGTACGTCGTGGACGACACCAC
CGGCCGCATCGACTACGACGACTTGGAACGCCGCGCACGGGCCTTTCGCC
CCAAGCTCATCATCGCGGGCGGCAGTGCGTATGCTCGCGAGTGGGATTAT
GAGCGCTTCCGCCAGATTGCCGATCAGAGCGGCGCCTATTTGCTGGTGGA
CATGGCGCACATTTCCGGCCTGGTTGCCACGGACGTGGCTTGTCGTCCGT
TTGAGTATGCGGACGTGGTTACTTCCACCACGCACAAGTCGCTGCGTGGG
CCGAGGTCGGGCATCATCTTCTTTAGGAAGAAGGCGTTGGCTGCGATTGG
CGACGGCGTCAACATGGAGGCCGCCATTAATGGCGCTGTGTTCCCTAGCT
TGCAGGGCGGTCCGCACAATCACCAGATCGCCGCGTTGGCTGTTCAGTTG
AAGGAAGTTGCTTCGGAACCGTTCCGCACCTATTCGAAGCAGGTCGTGAG
CAACGCGCGTGCTATGGCTGACCAGCTTATGAAGCATGACTACAAGCTTG
TCACTGATGGTACTGATAACCACCTGGTGCTGTGGGATTTGAGACCGTCT
GGTTTCTCGGGCAGTAAGGCCCAGTTGTTGTTCGACAAGTGCAGCATTAC
TTTGAACAAGAACGCGGTGCATGGCGATAAGAGTGCGCTCAATCCCGGCG
GCGTTCGCCTCGGAACGCCGGCTCTCACTAGCAGGGGGTTTGTTGAGGAT
GACTTCAGAAAGGTGGCCGACTTTTTGGATAGAGGCGTCAAGATTGGCCT
TCAGATCCAGGAGAAGACCGGAAAGAAACTTGTTGACTTCAAGCCAGCAA
TTGAGAACCACCCCGACTTGGAAGCGTTGCGAAAAGATGTTGAGGTGTTT
GCTTCATCATTTGATATTCCTGGCTTCGACGTCGATCAGATGGACTACAA
CCAGCTAAATTAA
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protein sequence of Ggra4023.t1

>Ggra4023.t1 ID=Ggra4023.t1|Name=Ggra4023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=471bp
MVISRPKPLTGNTPLREQDPEMHRLLELEKARQWRGLELIASENFTSAAV
LQCLGSVFTNKYSEGYPGVRYYGGNEVVDQVEELCRRRALEAFSLDSDTW
GVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGFYTPKKRVS
ATSIYFESLPYVVDDTTGRIDYDDLERRARAFRPKLIIAGGSAYAREWDY
ERFRQIADQSGAYLLVDMAHISGLVATDVACRPFEYADVVTSTTHKSLRG
PRSGIIFFRKKALAAIGDGVNMEAAINGAVFPSLQGGPHNHQIAALAVQL
KEVASEPFRTYSKQVVSNARAMADQLMKHDYKLVTDGTDNHLVLWDLRPS
GFSGSKAQLLFDKCSITLNKNAVHGDKSALNPGGVRLGTPALTSRGFVED
DFRKVADFLDRGVKIGLQIQEKTGKKLVDFKPAIENHPDLEALRKDVEVF
ASSFDIPGFDVDQMDYNQLN*
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mRNA from alignment at tig00000908_pilon:372642..374054+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4023.t1 ID=Ggra4023.t1|Name=Ggra4023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000908_pilon:372642..374054+ (Gracilaria gracilis GNS1m male)
ATGGTCATCTCGCGCCCCAAGCCGCTCACGGGCAATACGCCGCTGCGCGA
GCAGGACCCCGAGATGCACCGGCTGCTGGAGCTGGAGAAGGCGCGCCAGT
GGCGCGGGCTCGAGCTCATCGCGTCGGAGAACTTCACCTCCGCCGCCGTG
CTGCAGTGTCTTGGCTCCGTCTTCACCAACAAGTACTCGGAGGGCTACCC
AGGCGTGCGCTACTACGGCGGAAACGAGGTCGTCGACCAGGTGGAGGAGC
TGTGTCGTCGCCGCGCTCTCGAAGCGTTTTCGCTGGACTCGGACACCTGG
GGCGTCAACGTGCAGCCGTATTCCGGGTCGCCCGCTAACTTTGCGGCCTA
CACCGCGCTGCTCAACCCGCACGACCGCATCATGGGGCTGGATTTGCCCA
GTGGCGGCCATTTGACGCACGGCTTTTACACGCCGAAGAAGCGCGTGTCG
GCCACCAGCATCTACTTTGAGAGCCTGCCGTACGTCGTGGACGACACCAC
CGGCCGCATCGACTACGACGACTTGGAACGCCGCGCACGGGCCTTTCGCC
CCAAGCTCATCATCGCGGGCGGCAGTGCGTATGCTCGCGAGTGGGATTAT
GAGCGCTTCCGCCAGATTGCCGATCAGAGCGGCGCCTATTTGCTGGTGGA
CATGGCGCACATTTCCGGCCTGGTTGCCACGGACGTGGCTTGTCGTCCGT
TTGAGTATGCGGACGTGGTTACTTCCACCACGCACAAGTCGCTGCGTGGG
CCGAGGTCGGGCATCATCTTCTTTAGGAAGAAGGCGTTGGCTGCGATTGG
CGACGGCGTCAACATGGAGGCCGCCATTAATGGCGCTGTGTTCCCTAGCT
TGCAGGGCGGTCCGCACAATCACCAGATCGCCGCGTTGGCTGTTCAGTTG
AAGGAAGTTGCTTCGGAACCGTTCCGCACCTATTCGAAGCAGGTCGTGAG
CAACGCGCGTGCTATGGCTGACCAGCTTATGAAGCATGACTACAAGCTTG
TCACTGATGGTACTGATAACCACCTGGTGCTGTGGGATTTGAGACCGTCT
GGTTTCTCGGGCAGTAAGGCCCAGTTGTTGTTCGACAAGTGCAGCATTAC
TTTGAACAAGAACGCGGTGCATGGCGATAAGAGTGCGCTCAATCCCGGCG
GCGTTCGCCTCGGAACGCCGGCTCTCACTAGCAGGGGGTTTGTTGAGGAT
GACTTCAGAAAGGTGGCCGACTTTTTGGATAGAGGCGTCAAGATTGGCCT
TCAGATCCAGGAGAAGACCGGAAAGAAACTTGTTGACTTCAAGCCAGCAA
TTGAGAACCACCCCGACTTGGAAGCGTTGCGAAAAGATGTTGAGGTGTTT
GCTTCATCATTTGATATTCCTGGCTTCGACGTCGATCAGATGGACTACAA
CCAGCTAAATTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:372642..374054+

>Ggra4023.t1 ID=Ggra4023.t1|Name=Ggra4023.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000908_pilon:372642..374054+ (Gracilaria gracilis GNS1m male)
ATGGTCATCTCGCGCCCCAAGCCGCTCACGGGCAATACGCCGCTGCGCGA
GCAGGACCCCGAGATGCACCGGCTGCTGGAGCTGGAGAAGGCGCGCCAGT
GGCGCGGGCTCGAGCTCATCGCGTCGGAGAACTTCACCTCCGCCGCCGTG
CTGCAGTGTCTTGGCTCCGTCTTCACCAACAAGTACTCGGAGGGCTACCC
AGGCGTGCGCTACTACGGCGGAAACGAGGTCGTCGACCAGGTGGAGGAGC
TGTGTCGTCGCCGCGCTCTCGAAGCGTTTTCGCTGGACTCGGACACCTGG
GGCGTCAACGTGCAGCCGTATTCCGGGTCGCCCGCTAACTTTGCGGCCTA
CACCGCGCTGCTCAACCCGCACGACCGCATCATGGGGCTGGATTTGCCCA
GTGGCGGCCATTTGACGCACGGCTTTTACACGCCGAAGAAGCGCGTGTCG
GCCACCAGCATCTACTTTGAGAGCCTGCCGTACGTCGTGGACGACACCAC
CGGCCGCATCGACTACGACGACTTGGAACGCCGCGCACGGGCCTTTCGCC
CCAAGCTCATCATCGCGGGCGGCAGTGCGTATGCTCGCGAGTGGGATTAT
GAGCGCTTCCGCCAGATTGCCGATCAGAGCGGCGCCTATTTGCTGGTGGA
CATGGCGCACATTTCCGGCCTGGTTGCCACGGACGTGGCTTGTCGTCCGT
TTGAGTATGCGGACGTGGTTACTTCCACCACGCACAAGTCGCTGCGTGGG
CCGAGGTCGGGCATCATCTTCTTTAGGAAGAAGGCGTTGGCTGCGATTGG
CGACGGCGTCAACATGGAGGCCGCCATTAATGGCGCTGTGTTCCCTAGCT
TGCAGGGCGGTCCGCACAATCACCAGATCGCCGCGTTGGCTGTTCAGTTG
AAGGAAGTTGCTTCGGAACCGTTCCGCACCTATTCGAAGCAGGTCGTGAG
CAACGCGCGTGCTATGGCTGACCAGCTTATGAAGCATGACTACAAGCTTG
TCACTGATGGTACTGATAACCACCTGGTGCTGTGGGATTTGAGACCGTCT
GGTTTCTCGGGCAGTAAGGCCCAGTTGTTGTTCGACAAGTGCAGCATTAC
TTTGAACAAGAACGCGGTGCATGGCGATAAGAGTGCGCTCAATCCCGGCG
GCGTTCGCCTCGGAACGCCGGCTCTCACTAGCAGGGGGTTTGTTGAGGAT
GACTTCAGAAAGGTGGCCGACTTTTTGGATAGAGGCGTCAAGATTGGCCT
TCAGATCCAGGAGAAGACCGGAAAGAAACTTGTTGACTTCAAGCCAGCAA
TTGAGAACCACCCCGACTTGGAAGCGTTGCGAAAAGATGTTGAGGTGTTT
GCTTCATCATTTGATATTCCTGGCTTCGACGTCGATCAGATGGACTACAA
CCAGCTAAATTAA
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