Ggra4022.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4022.t1
Unique NameGgra4022.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:370765..371799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4022Ggra4022Gracilaria gracilis GNS1m malegenetig00000908_pilon 370765..371799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1Ggra4022.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 370765..371799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1.stop1Ggra4022.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 370765..370767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1.CDS1Ggra4022.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 370765..370774 -
Ggra4022.t1.CDS2Ggra4022.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 370976..371799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1.exon1Ggra4022.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 370765..370774 -
Ggra4022.t1.exon2Ggra4022.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 370976..371799 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1.intron1Ggra4022.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 370775..370975 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4022.t1.start1Ggra4022.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 371797..371799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4022.t1 ID=Ggra4022.t1|Name=Ggra4022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MQPYVVQDYPQPGDPYPPQQQHQQPQPQHHQPAPAYHQQQQQQPGYQGAQ
SPAHDPAPDPAASAAVPHSPYAEPYADPYAEQQQHHQQQQQQQPQPQPQQ
QQQQQQQQPGYAPAPYPQYGAPAPPAPYMPPYAGPPPMPYAPPPMMYGAA
PVAPLYAPMSYMGRPMMQLSHLADSPAHEIVPPAELALVIPAHDSVVEDP
DLVYLLEKANRYGGLDGEQQSRHKYAKYTFLAGLVLAKRGLPPQSVPDDP
DDVYVKLLNLYASNPARMGPDPEAFTE*
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spliced messenger RNA

>Ggra4022.t1 ID=Ggra4022.t1|Name=Ggra4022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000908_pilon:370765..371799- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCTACGTCGTGCAGGACTACCCGCAGCCGGGCGATCCCTACCC
GCCGCAGCAGCAGCACCAGCAGCCGCAGCCGCAGCACCATCAGCCCGCGC
CGGCCTACCACCAGCAACAGCAGCAGCAGCCGGGCTACCAGGGCGCACAG
TCGCCCGCGCACGACCCCGCGCCCGACCCCGCTGCCTCAGCCGCCGTGCC
GCACTCGCCGTACGCCGAGCCGTACGCCGACCCCTACGCCGAGCAGCAGC
AGCACCACCAACAGCAACAGCAACAGCAACCCCAACCCCAACCCCAACAA
CAACAACAACAACAACAACAGCAGCCGGGCTACGCACCCGCGCCTTACCC
GCAGTACGGCGCGCCTGCGCCGCCCGCGCCGTACATGCCGCCGTACGCCG
GCCCGCCGCCGATGCCGTACGCGCCGCCGCCGATGATGTATGGCGCCGCG
CCGGTCGCCCCGCTGTACGCGCCCATGTCGTACATGGGGCGCCCGATGAT
GCAGCTGTCGCACCTGGCCGACTCGCCCGCCCACGAGATTGTGCCCCCGG
CCGAGCTGGCGCTGGTCATCCCTGCGCACGACAGCGTCGTGGAGGACCCA
GACTTGGTATACTTGTTGGAGAAGGCCAACCGCTACGGCGGCCTGGATGG
CGAGCAGCAGAGCCGCCACAAGTATGCCAAGTATACCTTCCTGGCGGGGC
TTGTTTTGGCGAAGCGCGGCTTGCCGCCGCAGTCTGTGCCGGATGATCCG
GATGATGTTTATGTCAAGTTGCTTAATTTGTATGCGTCCAATCCGGCTAG
GATGGGGCCCGATCCGGAGGCGTTCACCGAGTAA
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protein sequence of Ggra4022.t1

>Ggra4022.t1 ID=Ggra4022.t1|Name=Ggra4022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MQPYVVQDYPQPGDPYPPQQQHQQPQPQHHQPAPAYHQQQQQQPGYQGAQ
SPAHDPAPDPAASAAVPHSPYAEPYADPYAEQQQHHQQQQQQQPQPQPQQ
QQQQQQQQPGYAPAPYPQYGAPAPPAPYMPPYAGPPPMPYAPPPMMYGAA
PVAPLYAPMSYMGRPMMQLSHLADSPAHEIVPPAELALVIPAHDSVVEDP
DLVYLLEKANRYGGLDGEQQSRHKYAKYTFLAGLVLAKRGLPPQSVPDDP
DDVYVKLLNLYASNPARMGPDPEAFTE*
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mRNA from alignment at tig00000908_pilon:370765..371799-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4022.t1 ID=Ggra4022.t1|Name=Ggra4022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000908_pilon:370765..371799- (Gracilaria gracilis GNS1m male)
ATGCAGCCCTACGTCGTGCAGGACTACCCGCAGCCGGGCGATCCCTACCC
GCCGCAGCAGCAGCACCAGCAGCCGCAGCCGCAGCACCATCAGCCCGCGC
CGGCCTACCACCAGCAACAGCAGCAGCAGCCGGGCTACCAGGGCGCACAG
TCGCCCGCGCACGACCCCGCGCCCGACCCCGCTGCCTCAGCCGCCGTGCC
GCACTCGCCGTACGCCGAGCCGTACGCCGACCCCTACGCCGAGCAGCAGC
AGCACCACCAACAGCAACAGCAACAGCAACCCCAACCCCAACCCCAACAA
CAACAACAACAACAACAACAGCAGCCGGGCTACGCACCCGCGCCTTACCC
GCAGTACGGCGCGCCTGCGCCGCCCGCGCCGTACATGCCGCCGTACGCCG
GCCCGCCGCCGATGCCGTACGCGCCGCCGCCGATGATGTATGGCGCCGCG
CCGGTCGCCCCGCTGTACGCGCCCATGTCGTACATGGGGCGCCCGATGAT
GCAGCTGTCGCACCTGGCCGACTCGCCCGCCCACGAGATTGTGCCCCCGG
CCGAGCTGGCGCTGGTCATCCCTGCGCACGACAGCGTCGTGGAGGACCCA
GACTTGGTATACTTGTTGGAGAAGGCCAACCGCTACGGCGGCCTGGATGG
CGAGCAGCAGAGCCGCCACAAGTATGCCAAGTATACCTTCCTGGCGGGGC
TTGTTTTGGCGAAGCGCGGCTTGCCGCCGCAGTCTGTGCCGGATGATCCG
GATGATGTTTATGTCAAGTTGCTTAATTTGTATGCGTCCAATCCGGCTAG
GATGGGGCCCGATCCGGAGGCGTTGTTGATTCGCACTTTAGCCAAGAGTC
GTCGTCATCATCATCACCATCATCGCGAGCATCGCCGTCATCATCATCAT
CACCGTGATAGGGAGCGTAGTTCTAGCAGGAATGGAAGTAGGAAGTCCAG
GTCCAGGAGCAGGTCCAGGAGCAAGAGCAGGTCAAGGAGATCCAGGTCTG
GGGATAGAACGTATTCGGACACTAGCACCGAGTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:370765..371799-

>Ggra4022.t1 ID=Ggra4022.t1|Name=Ggra4022.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000908_pilon:370765..371799- (Gracilaria gracilis GNS1m male)
ATGCAGCCCTACGTCGTGCAGGACTACCCGCAGCCGGGCGATCCCTACCC
GCCGCAGCAGCAGCACCAGCAGCCGCAGCCGCAGCACCATCAGCCCGCGC
CGGCCTACCACCAGCAACAGCAGCAGCAGCCGGGCTACCAGGGCGCACAG
TCGCCCGCGCACGACCCCGCGCCCGACCCCGCTGCCTCAGCCGCCGTGCC
GCACTCGCCGTACGCCGAGCCGTACGCCGACCCCTACGCCGAGCAGCAGC
AGCACCACCAACAGCAACAGCAACAGCAACCCCAACCCCAACCCCAACAA
CAACAACAACAACAACAACAGCAGCCGGGCTACGCACCCGCGCCTTACCC
GCAGTACGGCGCGCCTGCGCCGCCCGCGCCGTACATGCCGCCGTACGCCG
GCCCGCCGCCGATGCCGTACGCGCCGCCGCCGATGATGTATGGCGCCGCG
CCGGTCGCCCCGCTGTACGCGCCCATGTCGTACATGGGGCGCCCGATGAT
GCAGCTGTCGCACCTGGCCGACTCGCCCGCCCACGAGATTGTGCCCCCGG
CCGAGCTGGCGCTGGTCATCCCTGCGCACGACAGCGTCGTGGAGGACCCA
GACTTGGTATACTTGTTGGAGAAGGCCAACCGCTACGGCGGCCTGGATGG
CGAGCAGCAGAGCCGCCACAAGTATGCCAAGTATACCTTCCTGGCGGGGC
TTGTTTTGGCGAAGCGCGGCTTGCCGCCGCAGTCTGTGCCGGATGATCCG
GATGATGTTTATGTCAAGTTGCTTAATTTGTATGCGTCCAATCCGGCTAG
GATGGGGCCCGATCCGGAGGCGTTCACCGAGTAA
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