Ggra4019.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4019.t1
Unique Name	Ggra4019.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	681

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:359325..361367 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705352.1
Max annot lvl	2759\|Eukaryota
Evalue	3.81e-82
EggNOG OGs	2CTQS@1\|root,2S4CA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4019	Ggra4019	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 359325..361367 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4019.t1.stop1	Ggra4019.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 359325..359327 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4019.t1.CDS1	Ggra4019.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 359325..361367 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4019.t1.exon1	Ggra4019.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 359325..361367 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4019.t1.start1	Ggra4019.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 361365..361367 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4019.t1	Ggra4019.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 359325..361367 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:359325..361367-
coding sequence from alignment at tig00000908_pilon:359325..361367-

mRNA sequence

>Ggra4019.t1 ID=Ggra4019.t1|Name=Ggra4019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp
MPTAAQLLAAGRIDLLRAVQRHGGFATIASSAGLIPVRRHRGFDHLSYVR
AQLLPLFRARVLTPGVMPSASQLRLIRRADLLPCIAAAGGFSAVAAKLRL
LPARTRRRRLTAAREPSLPTRRKRRRRHYWHLWSNFESELRAFAHQSCDG
HMPLQRHLIDAKRTDLLNALRIHGGTASVARRMGLPPAPATKSKRPHSYW
KDPAVLNAQLLTFTARNGYHELMPTRRQLRDAGRMDLVYAVEKHGGYAKI
ASSLHLMWHGPCSYWRVFRNLEKRLLDYMRRKGLKDVMPLLKTLYDDGRM
DLVYGIARHGGMMKVATRIGATVQFPHRKPNYWEHPSHLQREVEDFLRTQ
PLAARRYMPTSVALVQAGRADLATAIRDRGGWVYYAQRLGLRFDFEIRPQ
GFWQCEANVLRELKNYVMHRYGSWEHPGKQPAQDEERSPEQQFLYIPSTD
MLKRDGRSDIAFAIERYHGGNSAFALRNGFEVAEDVVSILLAEEWMRWNR
FAPALRSWIRNHGSNGIIPTKQDLIKTGRHDLRFATYSHGGTRIIARRMQ
LVLAEDSLDVWLPAWLGIQAAKLGLLINMMGDDHRPGEGSKIALKYERDL
ASAVVGQCTRMMTTTVKRMVYGRMTSSSIRGIRKPRKRVGVGKDGGWQSA
TRGSDRLSAEELAKLRMRYRHLSPDDIIAV*

spliced messenger RNA

>Ggra4019.t1 ID=Ggra4019.t1|Name=Ggra4019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2043bp|location=Sequence derived from alignment at tig00000908_pilon:359325..361367- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCGCAGCGCAGCTGTTAGCGGCCGGACGCATCGATTTGCTACG
CGCCGTGCAGCGTCATGGCGGTTTTGCCACCATAGCGTCCAGTGCGGGGC
TCATCCCCGTGCGCAGGCATCGTGGCTTCGATCATCTTTCTTATGTGCGC
GCGCAGTTGCTGCCCTTGTTCCGTGCGCGCGTGCTCACTCCGGGCGTTAT
GCCGTCTGCGTCGCAGCTACGCCTCATTCGTCGCGCCGACTTGCTGCCTT
GTATTGCCGCTGCGGGCGGCTTTTCCGCCGTGGCCGCCAAGCTGCGTTTG
CTTCCGGCGCGAACGCGACGCCGCCGCCTCACGGCTGCGCGTGAGCCGTC
GTTGCCGACCAGGAGGAAGCGCCGGCGTAGGCATTACTGGCATTTGTGGA
GTAACTTCGAGTCTGAGTTGCGTGCGTTTGCGCACCAGTCTTGTGATGGA
CATATGCCGCTTCAGCGCCATTTAATCGACGCGAAGCGTACTGACTTGCT
CAATGCGCTGCGCATCCATGGTGGCACGGCCTCCGTGGCGCGCCGCATGG
GGCTACCTCCGGCGCCTGCCACTAAGTCCAAGCGTCCGCATAGCTACTGG
AAGGACCCGGCTGTCCTGAATGCACAGCTGCTCACGTTCACCGCCAGGAA
TGGGTACCATGAATTGATGCCCACGCGCCGCCAGCTGCGAGATGCGGGTA
GAATGGATCTTGTATACGCTGTTGAGAAGCATGGCGGCTATGCAAAGATT
GCTTCCTCTTTGCATCTCATGTGGCACGGACCATGTAGCTACTGGCGTGT
GTTTAGAAACCTTGAAAAGAGATTGCTGGACTATATGCGAAGGAAGGGAT
TGAAGGATGTCATGCCGCTTCTCAAGACGCTGTACGACGACGGTCGAATG
GACCTGGTGTACGGAATCGCCAGACATGGTGGCATGATGAAAGTTGCCAC
GCGCATTGGGGCAACGGTTCAGTTTCCTCACAGAAAGCCGAACTATTGGG
AACATCCGTCTCATCTGCAGAGGGAGGTGGAAGATTTCTTGCGGACGCAA
CCGCTGGCCGCGAGACGGTACATGCCTACCAGCGTCGCGCTTGTTCAGGC
GGGTCGAGCAGACTTGGCGACGGCAATCCGCGATCGGGGTGGTTGGGTTT
ACTATGCGCAACGACTGGGGCTGCGATTCGATTTTGAGATTCGTCCGCAG
GGCTTTTGGCAATGTGAGGCCAATGTCCTGCGGGAGCTTAAGAACTATGT
GATGCATCGATATGGATCATGGGAACATCCGGGAAAGCAACCAGCACAAG
ACGAGGAGCGCTCACCGGAACAACAGTTTTTGTACATTCCGTCCACCGAT
ATGCTCAAACGTGATGGCCGGTCCGATATTGCGTTCGCGATTGAGCGTTA
TCATGGCGGAAACTCTGCGTTTGCGCTTCGAAATGGGTTTGAAGTTGCAG
AGGACGTCGTCTCGATTTTGCTTGCCGAGGAGTGGATGCGGTGGAACAGA
TTCGCCCCCGCTCTGCGTTCGTGGATTAGGAATCATGGTTCAAACGGAAT
CATACCTACCAAACAGGACCTTATCAAAACAGGTCGACATGATCTGCGCT
TTGCAACGTACTCCCACGGTGGTACTCGAATCATAGCGCGGCGAATGCAG
CTTGTGCTTGCGGAAGATTCCCTTGATGTATGGTTACCGGCTTGGCTTGG
AATACAAGCCGCCAAGCTTGGTCTTTTGATAAACATGATGGGGGACGACC
ATCGGCCGGGCGAAGGGAGCAAGATAGCGCTCAAGTATGAACGTGATCTC
GCTTCTGCTGTCGTTGGGCAATGTACACGCATGATGACCACTACTGTGAA
GAGAATGGTTTACGGCAGAATGACGTCATCTTCCATACGAGGAATAAGGA
AGCCAAGAAAGCGAGTCGGGGTTGGAAAGGATGGCGGGTGGCAATCTGCC
ACACGCGGGTCCGACCGTCTATCCGCAGAGGAACTCGCGAAGCTCCGAAT
GCGGTATCGTCATCTATCCCCAGACGACATTATCGCAGTATGA

protein sequence of Ggra4019.t1

>Ggra4019.t1 ID=Ggra4019.t1|Name=Ggra4019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=681bp
MPTAAQLLAAGRIDLLRAVQRHGGFATIASSAGLIPVRRHRGFDHLSYVR
AQLLPLFRARVLTPGVMPSASQLRLIRRADLLPCIAAAGGFSAVAAKLRL
LPARTRRRRLTAAREPSLPTRRKRRRRHYWHLWSNFESELRAFAHQSCDG
HMPLQRHLIDAKRTDLLNALRIHGGTASVARRMGLPPAPATKSKRPHSYW
KDPAVLNAQLLTFTARNGYHELMPTRRQLRDAGRMDLVYAVEKHGGYAKI
ASSLHLMWHGPCSYWRVFRNLEKRLLDYMRRKGLKDVMPLLKTLYDDGRM
DLVYGIARHGGMMKVATRIGATVQFPHRKPNYWEHPSHLQREVEDFLRTQ
PLAARRYMPTSVALVQAGRADLATAIRDRGGWVYYAQRLGLRFDFEIRPQ
GFWQCEANVLRELKNYVMHRYGSWEHPGKQPAQDEERSPEQQFLYIPSTD
MLKRDGRSDIAFAIERYHGGNSAFALRNGFEVAEDVVSILLAEEWMRWNR
FAPALRSWIRNHGSNGIIPTKQDLIKTGRHDLRFATYSHGGTRIIARRMQ
LVLAEDSLDVWLPAWLGIQAAKLGLLINMMGDDHRPGEGSKIALKYERDL
ASAVVGQCTRMMTTTVKRMVYGRMTSSSIRGIRKPRKRVGVGKDGGWQSA
TRGSDRLSAEELAKLRMRYRHLSPDDIIAV*

mRNA from alignment at tig00000908_pilon:359325..361367-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4019.t1 ID=Ggra4019.t1|Name=Ggra4019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2043bp|location=Sequence derived from alignment at tig00000908_pilon:359325..361367- (Gracilaria gracilis GNS1m male)
ATGCCCACCGCAGCGCAGCTGTTAGCGGCCGGACGCATCGATTTGCTACG
CGCCGTGCAGCGTCATGGCGGTTTTGCCACCATAGCGTCCAGTGCGGGGC
TCATCCCCGTGCGCAGGCATCGTGGCTTCGATCATCTTTCTTATGTGCGC
GCGCAGTTGCTGCCCTTGTTCCGTGCGCGCGTGCTCACTCCGGGCGTTAT
GCCGTCTGCGTCGCAGCTACGCCTCATTCGTCGCGCCGACTTGCTGCCTT
GTATTGCCGCTGCGGGCGGCTTTTCCGCCGTGGCCGCCAAGCTGCGTTTG
CTTCCGGCGCGAACGCGACGCCGCCGCCTCACGGCTGCGCGTGAGCCGTC
GTTGCCGACCAGGAGGAAGCGCCGGCGTAGGCATTACTGGCATTTGTGGA
GTAACTTCGAGTCTGAGTTGCGTGCGTTTGCGCACCAGTCTTGTGATGGA
CATATGCCGCTTCAGCGCCATTTAATCGACGCGAAGCGTACTGACTTGCT
CAATGCGCTGCGCATCCATGGTGGCACGGCCTCCGTGGCGCGCCGCATGG
GGCTACCTCCGGCGCCTGCCACTAAGTCCAAGCGTCCGCATAGCTACTGG
AAGGACCCGGCTGTCCTGAATGCACAGCTGCTCACGTTCACCGCCAGGAA
TGGGTACCATGAATTGATGCCCACGCGCCGCCAGCTGCGAGATGCGGGTA
GAATGGATCTTGTATACGCTGTTGAGAAGCATGGCGGCTATGCAAAGATT
GCTTCCTCTTTGCATCTCATGTGGCACGGACCATGTAGCTACTGGCGTGT
GTTTAGAAACCTTGAAAAGAGATTGCTGGACTATATGCGAAGGAAGGGAT
TGAAGGATGTCATGCCGCTTCTCAAGACGCTGTACGACGACGGTCGAATG
GACCTGGTGTACGGAATCGCCAGACATGGTGGCATGATGAAAGTTGCCAC
GCGCATTGGGGCAACGGTTCAGTTTCCTCACAGAAAGCCGAACTATTGGG
AACATCCGTCTCATCTGCAGAGGGAGGTGGAAGATTTCTTGCGGACGCAA
CCGCTGGCCGCGAGACGGTACATGCCTACCAGCGTCGCGCTTGTTCAGGC
GGGTCGAGCAGACTTGGCGACGGCAATCCGCGATCGGGGTGGTTGGGTTT
ACTATGCGCAACGACTGGGGCTGCGATTCGATTTTGAGATTCGTCCGCAG
GGCTTTTGGCAATGTGAGGCCAATGTCCTGCGGGAGCTTAAGAACTATGT
GATGCATCGATATGGATCATGGGAACATCCGGGAAAGCAACCAGCACAAG
ACGAGGAGCGCTCACCGGAACAACAGTTTTTGTACATTCCGTCCACCGAT
ATGCTCAAACGTGATGGCCGGTCCGATATTGCGTTCGCGATTGAGCGTTA
TCATGGCGGAAACTCTGCGTTTGCGCTTCGAAATGGGTTTGAAGTTGCAG
AGGACGTCGTCTCGATTTTGCTTGCCGAGGAGTGGATGCGGTGGAACAGA
TTCGCCCCCGCTCTGCGTTCGTGGATTAGGAATCATGGTTCAAACGGAAT
CATACCTACCAAACAGGACCTTATCAAAACAGGTCGACATGATCTGCGCT
TTGCAACGTACTCCCACGGTGGTACTCGAATCATAGCGCGGCGAATGCAG
CTTGTGCTTGCGGAAGATTCCCTTGATGTATGGTTACCGGCTTGGCTTGG
AATACAAGCCGCCAAGCTTGGTCTTTTGATAAACATGATGGGGGACGACC
ATCGGCCGGGCGAAGGGAGCAAGATAGCGCTCAAGTATGAACGTGATCTC
GCTTCTGCTGTCGTTGGGCAATGTACACGCATGATGACCACTACTGTGAA
GAGAATGGTTTACGGCAGAATGACGTCATCTTCCATACGAGGAATAAGGA
AGCCAAGAAAGCGAGTCGGGGTTGGAAAGGATGGCGGGTGGCAATCTGCC
ACACGCGGGTCCGACCGTCTATCCGCAGAGGAACTCGCGAAGCTCCGAAT
GCGGTATCGTCATCTATCCCCAGACGACATTATCGCAGTATGA

Coding sequence (CDS) from alignment at tig00000908_pilon:359325..361367-

>Ggra4019.t1 ID=Ggra4019.t1|Name=Ggra4019.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2043bp|location=Sequence derived from alignment at tig00000908_pilon:359325..361367- (Gracilaria gracilis GNS1m male)
ATGCCCACCGCAGCGCAGCTGTTAGCGGCCGGACGCATCGATTTGCTACG
CGCCGTGCAGCGTCATGGCGGTTTTGCCACCATAGCGTCCAGTGCGGGGC
TCATCCCCGTGCGCAGGCATCGTGGCTTCGATCATCTTTCTTATGTGCGC
GCGCAGTTGCTGCCCTTGTTCCGTGCGCGCGTGCTCACTCCGGGCGTTAT
GCCGTCTGCGTCGCAGCTACGCCTCATTCGTCGCGCCGACTTGCTGCCTT
GTATTGCCGCTGCGGGCGGCTTTTCCGCCGTGGCCGCCAAGCTGCGTTTG
CTTCCGGCGCGAACGCGACGCCGCCGCCTCACGGCTGCGCGTGAGCCGTC
GTTGCCGACCAGGAGGAAGCGCCGGCGTAGGCATTACTGGCATTTGTGGA
GTAACTTCGAGTCTGAGTTGCGTGCGTTTGCGCACCAGTCTTGTGATGGA
CATATGCCGCTTCAGCGCCATTTAATCGACGCGAAGCGTACTGACTTGCT
CAATGCGCTGCGCATCCATGGTGGCACGGCCTCCGTGGCGCGCCGCATGG
GGCTACCTCCGGCGCCTGCCACTAAGTCCAAGCGTCCGCATAGCTACTGG
AAGGACCCGGCTGTCCTGAATGCACAGCTGCTCACGTTCACCGCCAGGAA
TGGGTACCATGAATTGATGCCCACGCGCCGCCAGCTGCGAGATGCGGGTA
GAATGGATCTTGTATACGCTGTTGAGAAGCATGGCGGCTATGCAAAGATT
GCTTCCTCTTTGCATCTCATGTGGCACGGACCATGTAGCTACTGGCGTGT
GTTTAGAAACCTTGAAAAGAGATTGCTGGACTATATGCGAAGGAAGGGAT
TGAAGGATGTCATGCCGCTTCTCAAGACGCTGTACGACGACGGTCGAATG
GACCTGGTGTACGGAATCGCCAGACATGGTGGCATGATGAAAGTTGCCAC
GCGCATTGGGGCAACGGTTCAGTTTCCTCACAGAAAGCCGAACTATTGGG
AACATCCGTCTCATCTGCAGAGGGAGGTGGAAGATTTCTTGCGGACGCAA
CCGCTGGCCGCGAGACGGTACATGCCTACCAGCGTCGCGCTTGTTCAGGC
GGGTCGAGCAGACTTGGCGACGGCAATCCGCGATCGGGGTGGTTGGGTTT
ACTATGCGCAACGACTGGGGCTGCGATTCGATTTTGAGATTCGTCCGCAG
GGCTTTTGGCAATGTGAGGCCAATGTCCTGCGGGAGCTTAAGAACTATGT
GATGCATCGATATGGATCATGGGAACATCCGGGAAAGCAACCAGCACAAG
ACGAGGAGCGCTCACCGGAACAACAGTTTTTGTACATTCCGTCCACCGAT
ATGCTCAAACGTGATGGCCGGTCCGATATTGCGTTCGCGATTGAGCGTTA
TCATGGCGGAAACTCTGCGTTTGCGCTTCGAAATGGGTTTGAAGTTGCAG
AGGACGTCGTCTCGATTTTGCTTGCCGAGGAGTGGATGCGGTGGAACAGA
TTCGCCCCCGCTCTGCGTTCGTGGATTAGGAATCATGGTTCAAACGGAAT
CATACCTACCAAACAGGACCTTATCAAAACAGGTCGACATGATCTGCGCT
TTGCAACGTACTCCCACGGTGGTACTCGAATCATAGCGCGGCGAATGCAG
CTTGTGCTTGCGGAAGATTCCCTTGATGTATGGTTACCGGCTTGGCTTGG
AATACAAGCCGCCAAGCTTGGTCTTTTGATAAACATGATGGGGGACGACC
ATCGGCCGGGCGAAGGGAGCAAGATAGCGCTCAAGTATGAACGTGATCTC
GCTTCTGCTGTCGTTGGGCAATGTACACGCATGATGACCACTACTGTGAA
GAGAATGGTTTACGGCAGAATGACGTCATCTTCCATACGAGGAATAAGGA
AGCCAAGAAAGCGAGTCGGGGTTGGAAAGGATGGCGGGTGGCAATCTGCC
ACACGCGGGTCCGACCGTCTATCCGCAGAGGAACTCGCGAAGCTCCGAAT
GCGGTATCGTCATCTATCCCCAGACGACATTATCGCAGTATGA