Ggra4017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4017.t1
Unique NameGgra4017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:355686..356838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FQJ3
PFAMsNAD_binding_11,NAD_binding_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00042,RC00087
KEGG koko:K18121
KEGG ReactionR00465,R09281
KEGG Pathwayko00630,ko00650,ko01100,ko01120,ko01200,map00630,map00650,map01100,map01120,map01200
Evalue9.66e-75
EggNOG OGsCOG2084@1|root,KOG0409@2759|Eukaryota
EC1.1.1.79
Description3hydroxyisobutyrate dehydrogenase
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4017Ggra4017Gracilaria gracilis GNS1m malegenetig00000908_pilon 355686..356838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1Ggra4017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 355686..356838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1.stop1Ggra4017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 355686..355688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1.CDS1Ggra4017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 355686..355777 -
Ggra4017.t1.CDS2Ggra4017.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 355873..356048 -
Ggra4017.t1.CDS3Ggra4017.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 356147..356250 -
Ggra4017.t1.CDS4Ggra4017.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000908_pilon 356335..356838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1.exon1Ggra4017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 355686..355777 -
Ggra4017.t1.exon2Ggra4017.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 355873..356048 -
Ggra4017.t1.exon3Ggra4017.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 356147..356250 -
Ggra4017.t1.exon4Ggra4017.t1.exon4Gracilaria gracilis GNS1m maleexontig00000908_pilon 356335..356838 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1.intron1Ggra4017.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 355778..355872 -
Ggra4017.t1.intron2Ggra4017.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 356049..356146 -
Ggra4017.t1.intron3Ggra4017.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000908_pilon 356251..356334 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4017.t1.start1Ggra4017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 356836..356838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4017.t1 ID=Ggra4017.t1|Name=Ggra4017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MGLPMVANLAKSFTNIVVWNRSDKQEALNQAVKDTDCKPIYAASPADVVA
QSDVTFSMLSTPEAVKTVFFEQPNAAIHGVSEGKSIVDCSTLQIEDMVQT
NEAVRKKGGSFLEAPVSGSLGPAKQGQLIFLCAGQEALYNNDTVQKAFEL
MGKKAFFLGTVGNGTKMKLVVNTLMATMLAALGEGIVLAESLELSIPDML
EVLSLGAMNNPMYALKGPKMKHGAKGYETNFPLEHAQKDVRFAQALADDH
GISMSVSSAANEWYKAAKGLGLGRHDFAAVIESIRAASGKC*
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spliced messenger RNA

>Ggra4017.t1 ID=Ggra4017.t1|Name=Ggra4017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000908_pilon:355686..356838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTACCAATGGTCGCTAATTTAGCCAAGTCGTTCACAAATATTGT
GGTTTGGAATCGTTCAGACAAGCAAGAAGCTCTCAATCAAGCTGTGAAAG
ATACAGATTGCAAGCCGATATATGCCGCGTCTCCAGCGGACGTTGTTGCG
CAGAGTGATGTCACTTTCTCTATGTTGTCCACTCCTGAAGCTGTTAAAAC
TGTCTTTTTCGAACAGCCAAACGCTGCGATCCATGGCGTTTCTGAAGGAA
AGAGCATCGTTGACTGTTCCACTTTACAGATTGAAGATATGGTTCAGACG
AATGAGGCTGTACGGAAAAAAGGTGGGTCTTTTCTGGAAGCTCCCGTTTC
CGGATCTCTTGGTCCAGCGAAGCAAGGGCAGTTGATCTTCTTGTGTGCAG
GACAGGAAGCGCTATATAATAATGATACGGTACAGAAAGCTTTTGAGCTG
ATGGGAAAGAAGGCATTCTTTCTCGGTACCGTCGGTAATGGTACAAAGAT
GAAGCTCGTCGTGAACACCTTGATGGCAACAATGTTAGCAGCCTTAGGAG
AAGGTATCGTGCTCGCCGAATCCCTGGAACTTTCTATACCTGACATGCTG
GAAGTTTTGTCCTTGGGAGCAATGAACAATCCTATGTATGCGCTGAAGGG
TCCGAAGATGAAGCACGGTGCTAAAGGATATGAAACTAACTTTCCACTGG
AGCATGCGCAAAAGGATGTCCGCTTTGCCCAAGCACTCGCTGATGATCAT
GGCATAAGCATGAGCGTTTCCAGCGCTGCCAATGAGTGGTATAAGGCAGC
CAAAGGTCTTGGACTTGGCAGACATGATTTCGCTGCTGTTATAGAAAGTA
TTCGGGCGGCATCTGGCAAGTGCTAA
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protein sequence of Ggra4017.t1

>Ggra4017.t1 ID=Ggra4017.t1|Name=Ggra4017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MGLPMVANLAKSFTNIVVWNRSDKQEALNQAVKDTDCKPIYAASPADVVA
QSDVTFSMLSTPEAVKTVFFEQPNAAIHGVSEGKSIVDCSTLQIEDMVQT
NEAVRKKGGSFLEAPVSGSLGPAKQGQLIFLCAGQEALYNNDTVQKAFEL
MGKKAFFLGTVGNGTKMKLVVNTLMATMLAALGEGIVLAESLELSIPDML
EVLSLGAMNNPMYALKGPKMKHGAKGYETNFPLEHAQKDVRFAQALADDH
GISMSVSSAANEWYKAAKGLGLGRHDFAAVIESIRAASGKC*
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mRNA from alignment at tig00000908_pilon:355686..356838-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4017.t1 ID=Ggra4017.t1|Name=Ggra4017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1153bp|location=Sequence derived from alignment at tig00000908_pilon:355686..356838- (Gracilaria gracilis GNS1m male)
ATGGGGCTACCAATGGTCGCTAATTTAGCCAAGTCGTTCACAAATATTGT
GGTTTGGAATCGTTCAGACAAGCAAGAAGCTCTCAATCAAGCTGTGAAAG
ATACAGATTGCAAGCCGATATATGCCGCGTCTCCAGCGGACGTTGTTGCG
CAGAGTGATGTCACTTTCTCTATGTTGTCCACTCCTGAAGCTGTTAAAAC
TGTCTTTTTCGAACAGCCAAACGCTGCGATCCATGGCGTTTCTGAAGGAA
AGAGCATCGTTGACTGTTCCACTTTACAGATTGAAGATATGGTTCAGACG
AATGAGGCTGTACGGAAAAAAGGTGGGTCTTTTCTGGAAGCTCCCGTTTC
CGGATCTCTTGGTCCAGCGAAGCAAGGGCAGTTGATCTTCTTGTGTGCAG
GACAGGAAGCGCTATATAATAATGATACGGTACAGAAAGCTTTTGAGCTG
ATGGGAAAGAAGGCATTCTTTCTCGGTACCGTCGGTAATGGTACAAAGAT
GAAGGTATGTTACAATATTTCCGCCAAAGAAGGTTTTGGACAACCTGGTT
TCTGCGAACTAACAGTTGTCTTATCATTTGTTCTTTAGCTCGTCGTGAAC
ACCTTGATGGCAACAATGTTAGCAGCCTTAGGAGAAGGTATCGTGCTCGC
CGAATCCCTGGAACTTTCTATACCTGACATGCTGGAAGTTTTGTACGTTT
GAATCCGCCTCCTCCTCATTGCATGAGCAAGACAACATGCGAAACACACA
CTAATCTGAGGGGCTCATGCGGAAAATGTTTCTCAAACAGGTCCTTGGGA
GCAATGAACAATCCTATGTATGCGCTGAAGGGTCCGAAGATGAAGCACGG
TGCTAAAGGATATGAAACTAACTTTCCACTGGAGCATGCGCAAAAGGATG
TCCGCTTTGCCCAAGCACTCGCTGATGATCATGGCATAAGCATGAGCGTT
TCCAGCGCTGCCAATGGTACGTGAAAAAGGCAAATCTCACACAAATGAAA
CAAGAGTTCAGAGGGTTACTAACTTGATTTACGATCATGTCCTCATGGCT
TGCGATGAAAGAGTGGTATAAGGCAGCCAAAGGTCTTGGACTTGGCAGAC
ATGATTTCGCTGCTGTTATAGAAAGTATTCGGGCGGCATCTGGCAAGTGC
TAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:355686..356838-

>Ggra4017.t1 ID=Ggra4017.t1|Name=Ggra4017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000908_pilon:355686..356838- (Gracilaria gracilis GNS1m male)
ATGGGGCTACCAATGGTCGCTAATTTAGCCAAGTCGTTCACAAATATTGT
GGTTTGGAATCGTTCAGACAAGCAAGAAGCTCTCAATCAAGCTGTGAAAG
ATACAGATTGCAAGCCGATATATGCCGCGTCTCCAGCGGACGTTGTTGCG
CAGAGTGATGTCACTTTCTCTATGTTGTCCACTCCTGAAGCTGTTAAAAC
TGTCTTTTTCGAACAGCCAAACGCTGCGATCCATGGCGTTTCTGAAGGAA
AGAGCATCGTTGACTGTTCCACTTTACAGATTGAAGATATGGTTCAGACG
AATGAGGCTGTACGGAAAAAAGGTGGGTCTTTTCTGGAAGCTCCCGTTTC
CGGATCTCTTGGTCCAGCGAAGCAAGGGCAGTTGATCTTCTTGTGTGCAG
GACAGGAAGCGCTATATAATAATGATACGGTACAGAAAGCTTTTGAGCTG
ATGGGAAAGAAGGCATTCTTTCTCGGTACCGTCGGTAATGGTACAAAGAT
GAAGCTCGTCGTGAACACCTTGATGGCAACAATGTTAGCAGCCTTAGGAG
AAGGTATCGTGCTCGCCGAATCCCTGGAACTTTCTATACCTGACATGCTG
GAAGTTTTGTCCTTGGGAGCAATGAACAATCCTATGTATGCGCTGAAGGG
TCCGAAGATGAAGCACGGTGCTAAAGGATATGAAACTAACTTTCCACTGG
AGCATGCGCAAAAGGATGTCCGCTTTGCCCAAGCACTCGCTGATGATCAT
GGCATAAGCATGAGCGTTTCCAGCGCTGCCAATGAGTGGTATAAGGCAGC
CAAAGGTCTTGGACTTGGCAGACATGATTTCGCTGCTGTTATAGAAAGTA
TTCGGGCGGCATCTGGCAAGTGCTAA
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