Ggra4012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4012.t1
Unique NameGgra4012.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:340969..342495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705880.1
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue1.66e-14
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4012Ggra4012Gracilaria gracilis GNS1m malegenetig00000908_pilon 340969..342495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1Ggra4012.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 340969..342495 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1.stop1Ggra4012.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 340969..340971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1.CDS1Ggra4012.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 340969..341316 -
Ggra4012.t1.CDS2Ggra4012.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 341398..341538 -
Ggra4012.t1.CDS3Ggra4012.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 341629..341814 -
Ggra4012.t1.CDS4Ggra4012.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000908_pilon 341902..342281 -
Ggra4012.t1.CDS5Ggra4012.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000908_pilon 342363..342495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1.exon1Ggra4012.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 340969..341316 -
Ggra4012.t1.exon2Ggra4012.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 341398..341538 -
Ggra4012.t1.exon3Ggra4012.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 341629..341814 -
Ggra4012.t1.exon4Ggra4012.t1.exon4Gracilaria gracilis GNS1m maleexontig00000908_pilon 341902..342281 -
Ggra4012.t1.exon5Ggra4012.t1.exon5Gracilaria gracilis GNS1m maleexontig00000908_pilon 342363..342495 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1.intron1Ggra4012.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 341317..341397 -
Ggra4012.t1.intron2Ggra4012.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 341539..341628 -
Ggra4012.t1.intron3Ggra4012.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000908_pilon 341815..341901 -
Ggra4012.t1.intron4Ggra4012.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000908_pilon 342282..342362 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4012.t1.start1Ggra4012.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 342493..342495 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4012.t1 ID=Ggra4012.t1|Name=Ggra4012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MEAFSTVFQVSIGGSVELLTLCAAGAVLSHLGHWNGKISAAMSNGVYKIF
FPALVFVAMLGTVQDAVTNHEGPDHHGSVQELWIPLCFSVIISLAMIVVA
YPLTILLARNKNECTKRTIFMCIVLGNSNSMPLLIMQSLCDGFQPLRSNE
QCFMKATAYGTLYISFITFLGFSLIFPYVLCAAQTPNHEGKPLLGEAYPT
SLKRTSPNCRSILRQSLLAPPTVMIIVTSILGCIPGVANAFLKEDGALRP
LMESSAMVGSIAVPLSSVIVGGDLYEALTSRKTNENSRERFGNFVIFAIC
MIRLVLFPILGRLAYKIVGLKEFINDDELGLFILVEFGVLTANNAMIIAN
MLAETIPENGRSMRLDVAKCLFVQYLIAPVLVTMNTAFAIKIQYD*
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spliced messenger RNA

>Ggra4012.t1 ID=Ggra4012.t1|Name=Ggra4012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000908_pilon:340969..342495- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGTTCTCAACAGTATTTCAGGTGAGCATTGGAGGAAGCGTAGA
ACTGCTCACTCTTTGTGCGGCTGGGGCGGTCCTTTCTCATCTTGGTCACT
GGAATGGAAAGATATCAGCCGCCATGTCGAATGGTGTCTACAAGATTTTT
TTCCCCGCCTTGGTGTTTGTCGCCATGCTCGGTACTGTACAAGATGCCGT
GACGAATCATGAAGGCCCTGATCACCATGGATCTGTGCAAGAGCTTTGGA
TTCCTCTATGCTTCTCGGTAATTATTTCGCTTGCGATGATTGTCGTGGCC
TATCCACTAACGATTCTGCTTGCTCGAAATAAAAATGAGTGCACGAAACG
AACAATCTTCATGTGCATAGTTCTTGGTAACAGCAACTCCATGCCCTTGC
TCATTATGCAATCACTATGCGATGGTTTCCAGCCTCTCAGATCAAATGAG
CAATGTTTTATGAAAGCAACGGCTTATGGAACATTGTATATCTCGTTCAT
AACTTTTCTAGGATTTTCGCTTATATTCCCGTATGTTCTTTGTGCTGCCC
AGACCCCAAATCATGAGGGAAAACCGCTGCTTGGTGAAGCTTACCCTACT
TCTCTGAAGAGAACTAGCCCGAATTGTAGATCCATATTGAGGCAAAGTCT
CTTAGCACCTCCAACTGTGATGATCATTGTAACGAGTATTCTGGGCTGTA
TTCCAGGTGTTGCAAACGCATTTCTGAAGGAGGATGGGGCACTCAGACCG
CTAATGGAATCTTCCGCCATGGTAGGGAGTATTGCTGTGCCGCTAAGCTC
TGTAATTGTCGGAGGAGATCTATACGAAGCTCTCACTTCTCGGAAGACAA
ACGAGAATAGTCGAGAACGGTTTGGAAACTTTGTCATTTTCGCTATTTGT
ATGATCCGACTGGTTCTTTTCCCGATTCTGGGAAGATTGGCTTATAAAAT
TGTCGGGCTCAAAGAATTTATCAACGACGATGAACTTGGATTATTCATAC
TAGTTGAGTTTGGGGTACTCACGGCAAACAATGCAATGATCATCGCTAAC
ATGTTAGCCGAAACTATACCAGAGAACGGAAGAAGCATGCGGTTGGATGT
GGCAAAATGCCTTTTTGTTCAATACCTTATCGCTCCGGTGCTGGTGACCA
TGAACACTGCATTCGCAATCAAGATTCAATACGACTGA
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protein sequence of Ggra4012.t1

>Ggra4012.t1 ID=Ggra4012.t1|Name=Ggra4012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MEAFSTVFQVSIGGSVELLTLCAAGAVLSHLGHWNGKISAAMSNGVYKIF
FPALVFVAMLGTVQDAVTNHEGPDHHGSVQELWIPLCFSVIISLAMIVVA
YPLTILLARNKNECTKRTIFMCIVLGNSNSMPLLIMQSLCDGFQPLRSNE
QCFMKATAYGTLYISFITFLGFSLIFPYVLCAAQTPNHEGKPLLGEAYPT
SLKRTSPNCRSILRQSLLAPPTVMIIVTSILGCIPGVANAFLKEDGALRP
LMESSAMVGSIAVPLSSVIVGGDLYEALTSRKTNENSRERFGNFVIFAIC
MIRLVLFPILGRLAYKIVGLKEFINDDELGLFILVEFGVLTANNAMIIAN
MLAETIPENGRSMRLDVAKCLFVQYLIAPVLVTMNTAFAIKIQYD*
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mRNA from alignment at tig00000908_pilon:340969..342495-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4012.t1 ID=Ggra4012.t1|Name=Ggra4012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000908_pilon:340969..342495- (Gracilaria gracilis GNS1m male)
ATGGAAGCGTTCTCAACAGTATTTCAGGTGAGCATTGGAGGAAGCGTAGA
ACTGCTCACTCTTTGTGCGGCTGGGGCGGTCCTTTCTCATCTTGGTCACT
GGAATGGAAAGATATCAGCCGCCATGTCGAATGGTACGTATAAAAGCCAC
CTACACCGAACTATTGAGGCGAAAAACTAATGGTGATTGTAAGCGTTGTT
CAACCATGAAATAGGTGTCTACAAGATTTTTTTCCCCGCCTTGGTGTTTG
TCGCCATGCTCGGTACTGTACAAGATGCCGTGACGAATCATGAAGGCCCT
GATCACCATGGATCTGTGCAAGAGCTTTGGATTCCTCTATGCTTCTCGGT
AATTATTTCGCTTGCGATGATTGTCGTGGCCTATCCACTAACGATTCTGC
TTGCTCGAAATAAAAATGAGTGCACGAAACGAACAATCTTCATGTGCATA
GTTCTTGGTAACAGCAACTCCATGCCCTTGCTCATTATGCAATCACTATG
CGATGGTTTCCAGCCTCTCAGATCAAATGAGCAATGTTTTATGAAAGCAA
CGGCTTATGGAACATTGTATATCTCGTTCATAACTTTTCTAGGAGTGAGT
TGACTTACAAACGCCAAATTGCCCATCCTTTATGCAATTCTGACCCGTTC
TCCGACCGTTTCACCTTTGAAACCAATCTAGTTTTCGCTTATATTCCCGT
ATGTTCTTTGTGCTGCCCAGACCCCAAATCATGAGGGAAAACCGCTGCTT
GGTGAAGCTTACCCTACTTCTCTGAAGAGAACTAGCCCGAATTGTAGATC
CATATTGAGGCAAAGTCTCTTAGCACCTCCAACTGTGATGATCATTGTAA
CGAGTATTCTGGGCTGTGTGAGTTGCCCAAATACATTTCTAAGTTGAAAA
CCAAACCCCGACTAACAAAAAACCTCTTGCTTCACTCTCGTACTTTCCCT
TGCACAGATTCCAGGTGTTGCAAACGCATTTCTGAAGGAGGATGGGGCAC
TCAGACCGCTAATGGAATCTTCCGCCATGGTAGGGAGTATTGCTGTGCCG
CTAAGCTCTGTAATTGTCGGAGGAGATCTATACGAAGCTCTCACTTCTGT
ACGTACATACGACTTGACTTTTCCAGTTCTTACGTTTATACTGACTTGCT
CTGTTTTGTCCTCATCCCCGGCAACATAGCGGAAGACAAACGAGAATAGT
CGAGAACGGTTTGGAAACTTTGTCATTTTCGCTATTTGTATGATCCGACT
GGTTCTTTTCCCGATTCTGGGAAGATTGGCTTATAAAATTGTCGGGCTCA
AAGAATTTATCAACGACGATGAACTTGGATTATTCATACTAGTTGAGTTT
GGGGTACTCACGGCAAACAATGCAATGATCATCGCTAACATGTTAGCCGA
AACTATACCAGAGAACGGAAGAAGCATGCGGTTGGATGTGGCAAAATGCC
TTTTTGTTCAATACCTTATCGCTCCGGTGCTGGTGACCATGAACACTGCA
TTCGCAATCAAGATTCAATACGACTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:340969..342495-

>Ggra4012.t1 ID=Ggra4012.t1|Name=Ggra4012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000908_pilon:340969..342495- (Gracilaria gracilis GNS1m male)
ATGGAAGCGTTCTCAACAGTATTTCAGGTGAGCATTGGAGGAAGCGTAGA
ACTGCTCACTCTTTGTGCGGCTGGGGCGGTCCTTTCTCATCTTGGTCACT
GGAATGGAAAGATATCAGCCGCCATGTCGAATGGTGTCTACAAGATTTTT
TTCCCCGCCTTGGTGTTTGTCGCCATGCTCGGTACTGTACAAGATGCCGT
GACGAATCATGAAGGCCCTGATCACCATGGATCTGTGCAAGAGCTTTGGA
TTCCTCTATGCTTCTCGGTAATTATTTCGCTTGCGATGATTGTCGTGGCC
TATCCACTAACGATTCTGCTTGCTCGAAATAAAAATGAGTGCACGAAACG
AACAATCTTCATGTGCATAGTTCTTGGTAACAGCAACTCCATGCCCTTGC
TCATTATGCAATCACTATGCGATGGTTTCCAGCCTCTCAGATCAAATGAG
CAATGTTTTATGAAAGCAACGGCTTATGGAACATTGTATATCTCGTTCAT
AACTTTTCTAGGATTTTCGCTTATATTCCCGTATGTTCTTTGTGCTGCCC
AGACCCCAAATCATGAGGGAAAACCGCTGCTTGGTGAAGCTTACCCTACT
TCTCTGAAGAGAACTAGCCCGAATTGTAGATCCATATTGAGGCAAAGTCT
CTTAGCACCTCCAACTGTGATGATCATTGTAACGAGTATTCTGGGCTGTA
TTCCAGGTGTTGCAAACGCATTTCTGAAGGAGGATGGGGCACTCAGACCG
CTAATGGAATCTTCCGCCATGGTAGGGAGTATTGCTGTGCCGCTAAGCTC
TGTAATTGTCGGAGGAGATCTATACGAAGCTCTCACTTCTCGGAAGACAA
ACGAGAATAGTCGAGAACGGTTTGGAAACTTTGTCATTTTCGCTATTTGT
ATGATCCGACTGGTTCTTTTCCCGATTCTGGGAAGATTGGCTTATAAAAT
TGTCGGGCTCAAAGAATTTATCAACGACGATGAACTTGGATTATTCATAC
TAGTTGAGTTTGGGGTACTCACGGCAAACAATGCAATGATCATCGCTAAC
ATGTTAGCCGAAACTATACCAGAGAACGGAAGAAGCATGCGGTTGGATGT
GGCAAAATGCCTTTTTGTTCAATACCTTATCGCTCCGGTGCTGGTGACCA
TGAACACTGCATTCGCAATCAAGATTCAATACGACTGA
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