Ggra4010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4010.t1
Unique NameGgra4010.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:334269..335765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr14990
PFAMsCOPIIcoated_ERV,ERGIC_N,Thioredoxin
Max annot lvl2836|Bacillariophyta
Evalue3.75e-101
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota,2XBN9@2836|Bacillariophyta
DescriptionEndoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4010Ggra4010Gracilaria gracilis GNS1m malegenetig00000908_pilon 334269..335765 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4010.t1.start1Ggra4010.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 334269..334271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4010.t1.CDS1Ggra4010.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 334269..335765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4010.t1.exon1Ggra4010.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 334269..335765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4010.t1.stop1Ggra4010.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 335763..335765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4010.t1Ggra4010.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 334269..335765 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4010.t1 ID=Ggra4010.t1|Name=Ggra4010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MPCLQCRLHRWLPSWSRILYELLLTISLRHNAFRSPTRSASAPVLVYVKL
IMLKLSSYDVFRKLPRDLTHGTSQGGILSVLAISLIGLVFLFELWTYLAG
EVETAVMLDTNAEQSLQINFKVTTLSLPCEFTSVDVWDYLGNTRLDLSKQ
IHKTIVTGRHGEKILGAYSDGNRFSNGDSQDEVKAEIGLSESEEINGDNF
EQKLAENHWSFVDYFAPWCIHCVRLAPTWEAFAKTVHDKDIHVKVFKVDC
TKNEFLCRQQHIMGYPSLRVYQGKTPKQPDYMGKRTVSSLLTWMESMTNE
HSHSNARKHSDEGCLIEGRVWVNRVPGKFHIAAKSDNHDLDPKATNLSHI
VHHFSFGTPLPRRVIRHLPSDVKRNINPLDGRMFINREEHTTHEHYIKVV
STHYRVGRSSLLGTEDSLGYQMATSNHRFKSDPSVPEARFAFDLSPTAVV
IIQGGKRWYEFVTSLCAIIGGIFTVVSLFDGAVYSVSKRIKGAQGKQS*
back to top

spliced messenger RNA

>Ggra4010.t1 ID=Ggra4010.t1|Name=Ggra4010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000908_pilon:334269..335765+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATGTCTGCAATGCAGACTGCATAGATGGTTGCCGTCATGGTCCCG
TATTCTGTACGAGTTGCTTCTGACCATCTCACTTCGACACAACGCTTTCC
GGTCTCCAACCCGTTCTGCCTCCGCGCCCGTCCTCGTGTATGTGAAGCTC
ATCATGCTCAAGCTTTCGTCCTACGACGTCTTTCGCAAGCTGCCACGCGA
TCTCACGCATGGCACTTCACAAGGCGGAATCCTATCCGTGCTCGCCATTT
CGCTCATCGGCCTCGTCTTTCTTTTCGAGCTATGGACTTATCTTGCAGGC
GAGGTGGAGACAGCCGTCATGCTCGACACGAACGCAGAGCAATCTTTGCA
GATAAACTTTAAGGTCACCACCCTGAGCCTCCCCTGCGAATTCACCAGCG
TCGACGTCTGGGATTACCTCGGAAACACGCGTCTCGACCTCAGCAAGCAA
ATTCACAAGACCATCGTCACTGGACGCCACGGAGAGAAGATTTTGGGCGC
CTACTCTGACGGCAATCGCTTTTCGAACGGCGATTCCCAGGATGAGGTCA
AGGCCGAAATCGGTCTTAGCGAGTCTGAAGAGATCAACGGCGACAATTTT
GAACAGAAGCTTGCTGAGAATCATTGGAGTTTCGTCGACTATTTCGCCCC
ATGGTGTATCCACTGCGTAAGACTCGCGCCCACTTGGGAAGCATTTGCAA
AGACTGTCCATGACAAAGATATCCATGTCAAGGTGTTCAAGGTTGATTGC
ACAAAGAATGAGTTTTTGTGTAGACAGCAACACATCATGGGATATCCCTC
CTTGCGAGTCTATCAAGGCAAGACACCGAAACAACCGGATTACATGGGAA
AACGTACTGTGTCCAGCCTTCTCACTTGGATGGAGAGCATGACCAACGAA
CATTCCCATTCCAATGCGCGCAAACATTCTGACGAGGGTTGCCTCATTGA
GGGCAGAGTATGGGTCAATAGGGTACCTGGCAAATTCCACATCGCCGCAA
AATCTGACAACCATGATCTCGATCCGAAGGCCACTAACCTTTCGCACATT
GTTCATCACTTCTCTTTCGGAACTCCGCTTCCAAGGCGGGTAATCAGACA
TCTCCCCAGTGATGTGAAGCGCAACATAAACCCGTTGGACGGCAGAATGT
TCATCAATCGGGAAGAGCATACCACGCACGAGCATTACATCAAGGTGGTC
TCGACACACTACAGAGTGGGTAGGTCAAGTCTTCTGGGAACAGAGGACTC
CCTTGGCTATCAAATGGCTACGTCAAATCATCGGTTCAAATCGGACCCCT
CTGTTCCGGAAGCAAGATTTGCATTTGACCTATCTCCGACAGCTGTCGTT
ATCATTCAAGGTGGAAAGCGGTGGTATGAGTTTGTCACATCATTGTGTGC
TATTATCGGTGGCATTTTTACCGTCGTCTCTCTCTTTGACGGTGCGGTGT
ACTCTGTGAGTAAGCGGATTAAGGGAGCGCAAGGAAAGCAATCCTAA
back to top

protein sequence of Ggra4010.t1

>Ggra4010.t1 ID=Ggra4010.t1|Name=Ggra4010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MPCLQCRLHRWLPSWSRILYELLLTISLRHNAFRSPTRSASAPVLVYVKL
IMLKLSSYDVFRKLPRDLTHGTSQGGILSVLAISLIGLVFLFELWTYLAG
EVETAVMLDTNAEQSLQINFKVTTLSLPCEFTSVDVWDYLGNTRLDLSKQ
IHKTIVTGRHGEKILGAYSDGNRFSNGDSQDEVKAEIGLSESEEINGDNF
EQKLAENHWSFVDYFAPWCIHCVRLAPTWEAFAKTVHDKDIHVKVFKVDC
TKNEFLCRQQHIMGYPSLRVYQGKTPKQPDYMGKRTVSSLLTWMESMTNE
HSHSNARKHSDEGCLIEGRVWVNRVPGKFHIAAKSDNHDLDPKATNLSHI
VHHFSFGTPLPRRVIRHLPSDVKRNINPLDGRMFINREEHTTHEHYIKVV
STHYRVGRSSLLGTEDSLGYQMATSNHRFKSDPSVPEARFAFDLSPTAVV
IIQGGKRWYEFVTSLCAIIGGIFTVVSLFDGAVYSVSKRIKGAQGKQS*
back to top

mRNA from alignment at tig00000908_pilon:334269..335765+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4010.t1 ID=Ggra4010.t1|Name=Ggra4010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000908_pilon:334269..335765+ (Gracilaria gracilis GNS1m male)
ATGCCATGTCTGCAATGCAGACTGCATAGATGGTTGCCGTCATGGTCCCG
TATTCTGTACGAGTTGCTTCTGACCATCTCACTTCGACACAACGCTTTCC
GGTCTCCAACCCGTTCTGCCTCCGCGCCCGTCCTCGTGTATGTGAAGCTC
ATCATGCTCAAGCTTTCGTCCTACGACGTCTTTCGCAAGCTGCCACGCGA
TCTCACGCATGGCACTTCACAAGGCGGAATCCTATCCGTGCTCGCCATTT
CGCTCATCGGCCTCGTCTTTCTTTTCGAGCTATGGACTTATCTTGCAGGC
GAGGTGGAGACAGCCGTCATGCTCGACACGAACGCAGAGCAATCTTTGCA
GATAAACTTTAAGGTCACCACCCTGAGCCTCCCCTGCGAATTCACCAGCG
TCGACGTCTGGGATTACCTCGGAAACACGCGTCTCGACCTCAGCAAGCAA
ATTCACAAGACCATCGTCACTGGACGCCACGGAGAGAAGATTTTGGGCGC
CTACTCTGACGGCAATCGCTTTTCGAACGGCGATTCCCAGGATGAGGTCA
AGGCCGAAATCGGTCTTAGCGAGTCTGAAGAGATCAACGGCGACAATTTT
GAACAGAAGCTTGCTGAGAATCATTGGAGTTTCGTCGACTATTTCGCCCC
ATGGTGTATCCACTGCGTAAGACTCGCGCCCACTTGGGAAGCATTTGCAA
AGACTGTCCATGACAAAGATATCCATGTCAAGGTGTTCAAGGTTGATTGC
ACAAAGAATGAGTTTTTGTGTAGACAGCAACACATCATGGGATATCCCTC
CTTGCGAGTCTATCAAGGCAAGACACCGAAACAACCGGATTACATGGGAA
AACGTACTGTGTCCAGCCTTCTCACTTGGATGGAGAGCATGACCAACGAA
CATTCCCATTCCAATGCGCGCAAACATTCTGACGAGGGTTGCCTCATTGA
GGGCAGAGTATGGGTCAATAGGGTACCTGGCAAATTCCACATCGCCGCAA
AATCTGACAACCATGATCTCGATCCGAAGGCCACTAACCTTTCGCACATT
GTTCATCACTTCTCTTTCGGAACTCCGCTTCCAAGGCGGGTAATCAGACA
TCTCCCCAGTGATGTGAAGCGCAACATAAACCCGTTGGACGGCAGAATGT
TCATCAATCGGGAAGAGCATACCACGCACGAGCATTACATCAAGGTGGTC
TCGACACACTACAGAGTGGGTAGGTCAAGTCTTCTGGGAACAGAGGACTC
CCTTGGCTATCAAATGGCTACGTCAAATCATCGGTTCAAATCGGACCCCT
CTGTTCCGGAAGCAAGATTTGCATTTGACCTATCTCCGACAGCTGTCGTT
ATCATTCAAGGTGGAAAGCGGTGGTATGAGTTTGTCACATCATTGTGTGC
TATTATCGGTGGCATTTTTACCGTCGTCTCTCTCTTTGACGGTGCGGTGT
ACTCTGTGAGTAAGCGGATTAAGGGAGCGCAAGGAAAGCAATCCTAA
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:334269..335765+

>Ggra4010.t1 ID=Ggra4010.t1|Name=Ggra4010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000908_pilon:334269..335765+ (Gracilaria gracilis GNS1m male)
ATGCCATGTCTGCAATGCAGACTGCATAGATGGTTGCCGTCATGGTCCCG
TATTCTGTACGAGTTGCTTCTGACCATCTCACTTCGACACAACGCTTTCC
GGTCTCCAACCCGTTCTGCCTCCGCGCCCGTCCTCGTGTATGTGAAGCTC
ATCATGCTCAAGCTTTCGTCCTACGACGTCTTTCGCAAGCTGCCACGCGA
TCTCACGCATGGCACTTCACAAGGCGGAATCCTATCCGTGCTCGCCATTT
CGCTCATCGGCCTCGTCTTTCTTTTCGAGCTATGGACTTATCTTGCAGGC
GAGGTGGAGACAGCCGTCATGCTCGACACGAACGCAGAGCAATCTTTGCA
GATAAACTTTAAGGTCACCACCCTGAGCCTCCCCTGCGAATTCACCAGCG
TCGACGTCTGGGATTACCTCGGAAACACGCGTCTCGACCTCAGCAAGCAA
ATTCACAAGACCATCGTCACTGGACGCCACGGAGAGAAGATTTTGGGCGC
CTACTCTGACGGCAATCGCTTTTCGAACGGCGATTCCCAGGATGAGGTCA
AGGCCGAAATCGGTCTTAGCGAGTCTGAAGAGATCAACGGCGACAATTTT
GAACAGAAGCTTGCTGAGAATCATTGGAGTTTCGTCGACTATTTCGCCCC
ATGGTGTATCCACTGCGTAAGACTCGCGCCCACTTGGGAAGCATTTGCAA
AGACTGTCCATGACAAAGATATCCATGTCAAGGTGTTCAAGGTTGATTGC
ACAAAGAATGAGTTTTTGTGTAGACAGCAACACATCATGGGATATCCCTC
CTTGCGAGTCTATCAAGGCAAGACACCGAAACAACCGGATTACATGGGAA
AACGTACTGTGTCCAGCCTTCTCACTTGGATGGAGAGCATGACCAACGAA
CATTCCCATTCCAATGCGCGCAAACATTCTGACGAGGGTTGCCTCATTGA
GGGCAGAGTATGGGTCAATAGGGTACCTGGCAAATTCCACATCGCCGCAA
AATCTGACAACCATGATCTCGATCCGAAGGCCACTAACCTTTCGCACATT
GTTCATCACTTCTCTTTCGGAACTCCGCTTCCAAGGCGGGTAATCAGACA
TCTCCCCAGTGATGTGAAGCGCAACATAAACCCGTTGGACGGCAGAATGT
TCATCAATCGGGAAGAGCATACCACGCACGAGCATTACATCAAGGTGGTC
TCGACACACTACAGAGTGGGTAGGTCAAGTCTTCTGGGAACAGAGGACTC
CCTTGGCTATCAAATGGCTACGTCAAATCATCGGTTCAAATCGGACCCCT
CTGTTCCGGAAGCAAGATTTGCATTTGACCTATCTCCGACAGCTGTCGTT
ATCATTCAAGGTGGAAAGCGGTGGTATGAGTTTGTCACATCATTGTGTGC
TATTATCGGTGGCATTTTTACCGTCGTCTCTCTCTTTGACGGTGCGGTGT
ACTCTGTGAGTAAGCGGATTAAGGGAGCGCAAGGAAAGCAATCCTAA
back to top