Ggra4009.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4009.t1
Unique Name	Ggra4009.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:332178..333506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4009	Ggra4009	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 332178..333506 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4009.t1.start1	Ggra4009.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 332178..332180 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4009.t1.CDS1	Ggra4009.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 332178..333506 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4009.t1.exon1	Ggra4009.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 332178..333506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4009.t1.stop1	Ggra4009.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 333504..333506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4009.t1	Ggra4009.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 332178..333506 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:332178..333506+
coding sequence from alignment at tig00000908_pilon:332178..333506+

mRNA sequence

>Ggra4009.t1 ID=Ggra4009.t1|Name=Ggra4009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MRPALCFFLACLLLPTAFAQTCNLVYCTRFGQRAECEYLSQLFPCALWHS
LETRVNPDLCDADCPQQCAPADQRPIASDGNVYCTECALRYASCESRFVV
FGPVNFGTPTDLPRAPVSVGVSPSPSPSSSSMPPPANTSADLIVGPVQIN
MPTNTTFEFPAEQLEQFPLDESPMPSSPEEQPIFSPEQTALPCEGDLNIF
DKIQCCNELDVGCIQAGQNCSTSGSLFPPIPCASGLECVIFDPGFPAADA
PNRGVCEPSHTAVESPQPSPDTEDVEESEEPEEEDDDEEEEAPEESEDPE
GSIIPQPSSELPRGAFCSTIGSLFPTPSCAPGLFCDIFDAGFPAADVPNR
GICRPLGSTPLTAPDGTPAPIIPPECRGDLDNFARRQCCVESAVRCLRRG
QLCSTAGSRIPPIPCASGLRCRIFAPGFPAVDRPNRGVCLAA*

spliced messenger RNA

>Ggra4009.t1 ID=Ggra4009.t1|Name=Ggra4009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000908_pilon:332178..333506+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCCGCGCTttgcttcttccttgcttgcttgctgctCCCCACCGC
CTTTGCGCAGACATGTAACCTCGTCTACTGCACGCGCTTCGGGCAACGCG
CCGAGTGTGAATATCTGTCGCAGCTATTTCCGTGCGCGCTGTGGCATTCT
CTCGAAACGCGAGTCAACCCCGACTTGTGTGACGCCGACTGTCCTCAGCA
ATGTGCGCCCGCAGATCAGCGTCCCATCGCGTCAGATGGCAACGTTTACT
GCACTGAATGCGCGTTGCGTTACGCATCATGCGAGTCGCGCTTCGTCGTG
TTTGGACCGGTCAACTTTGGCACGCCCACCGACCTTCCTCGCGCCCCTGT
TAGCGTTGGCGTCTCACCATCTCCATCTCCTTCTTCGTCCTCAATGCCGC
CGCCAGCCAACACGTCTGCTGACCTCATTGTGGGGCCCGTTCAAATCAAC
ATGCCAACGAACACTACGTTCGAATTCCCCGCCGAACAACTAGAGCAGTT
CCCGCTGGACGAATCACCGATGCCCAGTTCTCCTGAAGAACAGCCCATAT
TTTCACCCGAGCAAACTGCTCTGCCATGCGAAGGCGATCTCAACATCTTT
GACAAAATACAATGCTGCAATGAGCTTGACGTTGGCTGTATCCAAGCCGG
TCAGAACTGCTCAACTTCAGGTTCACTGTTCCCCCCAATTCCATGTGCAA
GCGGTCTAGAGTGCGTCATATTCGACCCAGGTTTTCCAGCCGCGGATGCC
CCGAATCGCGGTGTTTGCGAGCCGAGCCACACAGCCGTCGAAAGCCCACA
GCCAAGCCCCGACACagaagatgttgaagaatctgaggaacccgaagaag
aagatgatgatgaagaagaagaagCACCGGAGGAGTCAGAGGACCCCGAA
GGTTCGATTATACCACAGCCTTCTAGCGAACTACCGCGTGGCGCTTTCTG
CAGCACGATAGGAAGTCTCTTCCCGACTCCGTCGTGTGCACCAGGTCTGT
TCTGCGACATCTTTGATGCCGGCTTCCCAGCCGCCGATGTGCCCAATCGT
GGTATCTGCCGCCCTCTAGGAAGCACCCCTCTCACGGCGCCTGACGGCAC
ACCAGCACCAATTATACCGCCGGAGTGCCGAGGTGATTTGGACAACTTTG
CGCGCAGACAATGCTGCGTTGAGAGCGCAGTGCGCTGCTTGCGAAGAGGC
CAGCTGTGCTCGACGGCGGGCTCGCGTATTCCGCCCATTCCGTGTGCATC
GGGTCTCCGTTGTCGCATTTTTGCACCGGGCTTCCCAGCTGTTGACAGAC
CTAACCGTGGAGTTTGTCTTGCTGCGTGA

protein sequence of Ggra4009.t1

>Ggra4009.t1 ID=Ggra4009.t1|Name=Ggra4009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MRPALCFFLACLLLPTAFAQTCNLVYCTRFGQRAECEYLSQLFPCALWHS
LETRVNPDLCDADCPQQCAPADQRPIASDGNVYCTECALRYASCESRFVV
FGPVNFGTPTDLPRAPVSVGVSPSPSPSSSSMPPPANTSADLIVGPVQIN
MPTNTTFEFPAEQLEQFPLDESPMPSSPEEQPIFSPEQTALPCEGDLNIF
DKIQCCNELDVGCIQAGQNCSTSGSLFPPIPCASGLECVIFDPGFPAADA
PNRGVCEPSHTAVESPQPSPDTEDVEESEEPEEEDDDEEEEAPEESEDPE
GSIIPQPSSELPRGAFCSTIGSLFPTPSCAPGLFCDIFDAGFPAADVPNR
GICRPLGSTPLTAPDGTPAPIIPPECRGDLDNFARRQCCVESAVRCLRRG
QLCSTAGSRIPPIPCASGLRCRIFAPGFPAVDRPNRGVCLAA*

mRNA from alignment at tig00000908_pilon:332178..333506+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4009.t1 ID=Ggra4009.t1|Name=Ggra4009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000908_pilon:332178..333506+ (Gracilaria gracilis GNS1m male)
ATGCGTCCCGCGCTttgcttcttccttgcttgcttgctgctCCCCACCGC
CTTTGCGCAGACATGTAACCTCGTCTACTGCACGCGCTTCGGGCAACGCG
CCGAGTGTGAATATCTGTCGCAGCTATTTCCGTGCGCGCTGTGGCATTCT
CTCGAAACGCGAGTCAACCCCGACTTGTGTGACGCCGACTGTCCTCAGCA
ATGTGCGCCCGCAGATCAGCGTCCCATCGCGTCAGATGGCAACGTTTACT
GCACTGAATGCGCGTTGCGTTACGCATCATGCGAGTCGCGCTTCGTCGTG
TTTGGACCGGTCAACTTTGGCACGCCCACCGACCTTCCTCGCGCCCCTGT
TAGCGTTGGCGTCTCACCATCTCCATCTCCTTCTTCGTCCTCAATGCCGC
CGCCAGCCAACACGTCTGCTGACCTCATTGTGGGGCCCGTTCAAATCAAC
ATGCCAACGAACACTACGTTCGAATTCCCCGCCGAACAACTAGAGCAGTT
CCCGCTGGACGAATCACCGATGCCCAGTTCTCCTGAAGAACAGCCCATAT
TTTCACCCGAGCAAACTGCTCTGCCATGCGAAGGCGATCTCAACATCTTT
GACAAAATACAATGCTGCAATGAGCTTGACGTTGGCTGTATCCAAGCCGG
TCAGAACTGCTCAACTTCAGGTTCACTGTTCCCCCCAATTCCATGTGCAA
GCGGTCTAGAGTGCGTCATATTCGACCCAGGTTTTCCAGCCGCGGATGCC
CCGAATCGCGGTGTTTGCGAGCCGAGCCACACAGCCGTCGAAAGCCCACA
GCCAAGCCCCGACACagaagatgttgaagaatctgaggaacccgaagaag
aagatgatgatgaagaagaagaagCACCGGAGGAGTCAGAGGACCCCGAA
GGTTCGATTATACCACAGCCTTCTAGCGAACTACCGCGTGGCGCTTTCTG
CAGCACGATAGGAAGTCTCTTCCCGACTCCGTCGTGTGCACCAGGTCTGT
TCTGCGACATCTTTGATGCCGGCTTCCCAGCCGCCGATGTGCCCAATCGT
GGTATCTGCCGCCCTCTAGGAAGCACCCCTCTCACGGCGCCTGACGGCAC
ACCAGCACCAATTATACCGCCGGAGTGCCGAGGTGATTTGGACAACTTTG
CGCGCAGACAATGCTGCGTTGAGAGCGCAGTGCGCTGCTTGCGAAGAGGC
CAGCTGTGCTCGACGGCGGGCTCGCGTATTCCGCCCATTCCGTGTGCATC
GGGTCTCCGTTGTCGCATTTTTGCACCGGGCTTCCCAGCTGTTGACAGAC
CTAACCGTGGAGTTTGTCTTGCTGCGTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:332178..333506+

>Ggra4009.t1 ID=Ggra4009.t1|Name=Ggra4009.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000908_pilon:332178..333506+ (Gracilaria gracilis GNS1m male)
ATGCGTCCCGCGCTttgcttcttccttgcttgcttgctgctCCCCACCGC
CTTTGCGCAGACATGTAACCTCGTCTACTGCACGCGCTTCGGGCAACGCG
CCGAGTGTGAATATCTGTCGCAGCTATTTCCGTGCGCGCTGTGGCATTCT
CTCGAAACGCGAGTCAACCCCGACTTGTGTGACGCCGACTGTCCTCAGCA
ATGTGCGCCCGCAGATCAGCGTCCCATCGCGTCAGATGGCAACGTTTACT
GCACTGAATGCGCGTTGCGTTACGCATCATGCGAGTCGCGCTTCGTCGTG
TTTGGACCGGTCAACTTTGGCACGCCCACCGACCTTCCTCGCGCCCCTGT
TAGCGTTGGCGTCTCACCATCTCCATCTCCTTCTTCGTCCTCAATGCCGC
CGCCAGCCAACACGTCTGCTGACCTCATTGTGGGGCCCGTTCAAATCAAC
ATGCCAACGAACACTACGTTCGAATTCCCCGCCGAACAACTAGAGCAGTT
CCCGCTGGACGAATCACCGATGCCCAGTTCTCCTGAAGAACAGCCCATAT
TTTCACCCGAGCAAACTGCTCTGCCATGCGAAGGCGATCTCAACATCTTT
GACAAAATACAATGCTGCAATGAGCTTGACGTTGGCTGTATCCAAGCCGG
TCAGAACTGCTCAACTTCAGGTTCACTGTTCCCCCCAATTCCATGTGCAA
GCGGTCTAGAGTGCGTCATATTCGACCCAGGTTTTCCAGCCGCGGATGCC
CCGAATCGCGGTGTTTGCGAGCCGAGCCACACAGCCGTCGAAAGCCCACA
GCCAAGCCCCGACACagaagatgttgaagaatctgaggaacccgaagaag
aagatgatgatgaagaagaagaagCACCGGAGGAGTCAGAGGACCCCGAA
GGTTCGATTATACCACAGCCTTCTAGCGAACTACCGCGTGGCGCTTTCTG
CAGCACGATAGGAAGTCTCTTCCCGACTCCGTCGTGTGCACCAGGTCTGT
TCTGCGACATCTTTGATGCCGGCTTCCCAGCCGCCGATGTGCCCAATCGT
GGTATCTGCCGCCCTCTAGGAAGCACCCCTCTCACGGCGCCTGACGGCAC
ACCAGCACCAATTATACCGCCGGAGTGCCGAGGTGATTTGGACAACTTTG
CGCGCAGACAATGCTGCGTTGAGAGCGCAGTGCGCTGCTTGCGAAGAGGC
CAGCTGTGCTCGACGGCGGGCTCGCGTATTCCGCCCATTCCGTGTGCATC
GGGTCTCCGTTGTCGCATTTTTGCACCGGGCTTCCCAGCTGTTGACAGAC
CTAACCGTGGAGTTTGTCTTGCTGCGTGA