Ggra4005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4005.t1
Unique NameGgra4005.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:324693..325622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1155714.KB891998_gene1174
PFAMsPkinase
Max annot lvl201174|Actinobacteria
Evalue4.98e-11
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,2GIV0@201174|Actinobacteria
Descriptionserine threonine protein kinase
COG categoryKLT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4005Ggra4005Gracilaria gracilis GNS1m malegenetig00000908_pilon 324693..325622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4005.t1.stop1Ggra4005.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 324693..324695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4005.t1.CDS1Ggra4005.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 324693..325622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4005.t1.exon1Ggra4005.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 324693..325622 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4005.t1.start1Ggra4005.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 325620..325622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4005.t1Ggra4005.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 324693..325622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4005.t1 ID=Ggra4005.t1|Name=Ggra4005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MTLKRLRHVSQIPTSSHSLVSIAELPSTENEPTLVVVKTYRRSDVSRHRL
ELCVSAERDALVRLSNDRSGVVPRLLSAQVTSLNLTFVMTLASGVPASRL
PRPLPLNRVSRILRNLITSLAAVHGAGVVHADIALRNVIVDYENQDKVCL
VDYGACFLTGSSARDCSQTTTANVIPPEMLNTTIPDPTADVWALGVFAWA
CMFGGAGPFHGQTDANILQLIDQYGRGQFDITDRFWDACQELAVVRTSAW
LHAFDFVNICLSREPASRFAQCNTNTDFKDWSYVVDYERIRAHPFLHMDD
NSFVSQQSS*
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spliced messenger RNA

>Ggra4005.t1 ID=Ggra4005.t1|Name=Ggra4005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000908_pilon:324693..325622- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTGAAACGGCTTCGTCACGTTTCCCAAATCCCAACCTCAAGTCA
TTCGCTTGTTTCTATCGCCGAGTTGCCATCAACAGAGAATGAGCCAACGC
TGGTGGTTGTCAAGACGTACAGACGTTCTGATGTGTCTCGTCACCGCTTA
GAGTTGTGTGTATCTGCAGAACGAGACGCGCTCGTACGCCTCAGCAATGA
CCGGTCTGGAGTTGTACCACGCCTTCTTAGCGCGCAAGTCACCTCCCTTA
ATCTTACTTTTGTCATGACGCTTGCATCGGGCGTACCAGCTTCACGTCTA
CCGCGCCCATTACCGCTGAACCGTGTTTCTCGTATTCTGCGCAACCTCAT
AACCTCCTTGGCCGCTGTCCATGGTGCTGGTGTAGTCCATGCCGACATTG
CGTTAAGAAATGTCATTGTAGATTACGAAAACCAGGACAAAGTCTGTCTT
GTGGACTACGGGGCTTGCTTTCTTACCGGCTCTTCTGCCCGTGATTGTTC
GCAGACCACGACGGCGAACGTAATCCCACCGGAGATGTTAAATACCACCA
TCCCTGATCCAACCGCAGATGTCTGGGCACTAGGGGTTTTCGCGTGGGCT
TGCATGTTCGGAGGTGCGGGCCCTTTTCACGGGCAGACAGATGCAAACAT
TCTGCAGCTCATTGATCAGTACGGACGAGGTCAATTCGACATCACGGACA
GGTTCTGGGATGCCTGCCAAGAGTTGGCCGTCGTTCGTACGAGTGCTTGG
CTTCATGCATTTGATTTTGTGAACATCTGTTTGTCGAGAGAACCAGCGTC
GAGGTTTGCACAGTGCAATACAAATACTGATTTTAAGGACTGGAGCTATG
TCGTTGACTACGAACGAATACGGGCTCATCCGTTTCTGCACATGGACGAT
AACTCTTTCGTCTCACAGCAGTCCTCATGA
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protein sequence of Ggra4005.t1

>Ggra4005.t1 ID=Ggra4005.t1|Name=Ggra4005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MTLKRLRHVSQIPTSSHSLVSIAELPSTENEPTLVVVKTYRRSDVSRHRL
ELCVSAERDALVRLSNDRSGVVPRLLSAQVTSLNLTFVMTLASGVPASRL
PRPLPLNRVSRILRNLITSLAAVHGAGVVHADIALRNVIVDYENQDKVCL
VDYGACFLTGSSARDCSQTTTANVIPPEMLNTTIPDPTADVWALGVFAWA
CMFGGAGPFHGQTDANILQLIDQYGRGQFDITDRFWDACQELAVVRTSAW
LHAFDFVNICLSREPASRFAQCNTNTDFKDWSYVVDYERIRAHPFLHMDD
NSFVSQQSS*
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mRNA from alignment at tig00000908_pilon:324693..325622-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4005.t1 ID=Ggra4005.t1|Name=Ggra4005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000908_pilon:324693..325622- (Gracilaria gracilis GNS1m male)
ATGACATTGAAACGGCTTCGTCACGTTTCCCAAATCCCAACCTCAAGTCA
TTCGCTTGTTTCTATCGCCGAGTTGCCATCAACAGAGAATGAGCCAACGC
TGGTGGTTGTCAAGACGTACAGACGTTCTGATGTGTCTCGTCACCGCTTA
GAGTTGTGTGTATCTGCAGAACGAGACGCGCTCGTACGCCTCAGCAATGA
CCGGTCTGGAGTTGTACCACGCCTTCTTAGCGCGCAAGTCACCTCCCTTA
ATCTTACTTTTGTCATGACGCTTGCATCGGGCGTACCAGCTTCACGTCTA
CCGCGCCCATTACCGCTGAACCGTGTTTCTCGTATTCTGCGCAACCTCAT
AACCTCCTTGGCCGCTGTCCATGGTGCTGGTGTAGTCCATGCCGACATTG
CGTTAAGAAATGTCATTGTAGATTACGAAAACCAGGACAAAGTCTGTCTT
GTGGACTACGGGGCTTGCTTTCTTACCGGCTCTTCTGCCCGTGATTGTTC
GCAGACCACGACGGCGAACGTAATCCCACCGGAGATGTTAAATACCACCA
TCCCTGATCCAACCGCAGATGTCTGGGCACTAGGGGTTTTCGCGTGGGCT
TGCATGTTCGGAGGTGCGGGCCCTTTTCACGGGCAGACAGATGCAAACAT
TCTGCAGCTCATTGATCAGTACGGACGAGGTCAATTCGACATCACGGACA
GGTTCTGGGATGCCTGCCAAGAGTTGGCCGTCGTTCGTACGAGTGCTTGG
CTTCATGCATTTGATTTTGTGAACATCTGTTTGTCGAGAGAACCAGCGTC
GAGGTTTGCACAGTGCAATACAAATACTGATTTTAAGGACTGGAGCTATG
TCGTTGACTACGAACGAATACGGGCTCATCCGTTTCTGCACATGGACGAT
AACTCTTTCGTCTCACAGCAGTCCTCATGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:324693..325622-

>Ggra4005.t1 ID=Ggra4005.t1|Name=Ggra4005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000908_pilon:324693..325622- (Gracilaria gracilis GNS1m male)
ATGACATTGAAACGGCTTCGTCACGTTTCCCAAATCCCAACCTCAAGTCA
TTCGCTTGTTTCTATCGCCGAGTTGCCATCAACAGAGAATGAGCCAACGC
TGGTGGTTGTCAAGACGTACAGACGTTCTGATGTGTCTCGTCACCGCTTA
GAGTTGTGTGTATCTGCAGAACGAGACGCGCTCGTACGCCTCAGCAATGA
CCGGTCTGGAGTTGTACCACGCCTTCTTAGCGCGCAAGTCACCTCCCTTA
ATCTTACTTTTGTCATGACGCTTGCATCGGGCGTACCAGCTTCACGTCTA
CCGCGCCCATTACCGCTGAACCGTGTTTCTCGTATTCTGCGCAACCTCAT
AACCTCCTTGGCCGCTGTCCATGGTGCTGGTGTAGTCCATGCCGACATTG
CGTTAAGAAATGTCATTGTAGATTACGAAAACCAGGACAAAGTCTGTCTT
GTGGACTACGGGGCTTGCTTTCTTACCGGCTCTTCTGCCCGTGATTGTTC
GCAGACCACGACGGCGAACGTAATCCCACCGGAGATGTTAAATACCACCA
TCCCTGATCCAACCGCAGATGTCTGGGCACTAGGGGTTTTCGCGTGGGCT
TGCATGTTCGGAGGTGCGGGCCCTTTTCACGGGCAGACAGATGCAAACAT
TCTGCAGCTCATTGATCAGTACGGACGAGGTCAATTCGACATCACGGACA
GGTTCTGGGATGCCTGCCAAGAGTTGGCCGTCGTTCGTACGAGTGCTTGG
CTTCATGCATTTGATTTTGTGAACATCTGTTTGTCGAGAGAACCAGCGTC
GAGGTTTGCACAGTGCAATACAAATACTGATTTTAAGGACTGGAGCTATG
TCGTTGACTACGAACGAATACGGGCTCATCCGTTTCTGCACATGGACGAT
AACTCTTTCGTCTCACAGCAGTCCTCATGA
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