Ggra4003.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4003.t1
Unique NameGgra4003.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:321470..321775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4003Ggra4003Gracilaria gracilis GNS1m malegenetig00000908_pilon 321470..321775 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4003.t1.stop1Ggra4003.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 321470..321472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4003.t1.CDS1Ggra4003.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 321470..321775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4003.t1.exon1Ggra4003.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 321470..321775 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4003.t1.start1Ggra4003.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 321773..321775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4003.t1Ggra4003.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 321470..321775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4003.t1 ID=Ggra4003.t1|Name=Ggra4003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MTVDEALRRQQTVTELELHRTQSSRLEKRHRELEEAINALKDQEDEPVLY
CIGKPAFLQLSVGKARSLLRQEKNTVWEEIDRVQRAIVKLERRLEGLSAS
S*
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spliced messenger RNA

>Ggra4003.t1 ID=Ggra4003.t1|Name=Ggra4003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000908_pilon:321470..321775- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTTGACGAGGCGTTGCGAAGGCAGCAAACCGTGACAGAACTCGA
ACTGCACAGAACACAGTCTTCGCGGCTCGAGAAGAGACATCGAGAACTGG
AAGAAGCCATTAACGCTCTGAAAGACCAGGAAGATGAGCCCGTTCTGTAT
TGCATTGGTAAACCGGCATTCTTGCAGTTATCAGTTGGAAAAGCCAGGTC
ATTGCTGAGGCAGGAGAAGAACACTGTTTGGGAGGAGATTGATAGGGTAC
AACGCGCCATTGTGAAACTTGAACGTCGACTAGAAGGTCTTTCCGCATCG
AGCTGA
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protein sequence of Ggra4003.t1

>Ggra4003.t1 ID=Ggra4003.t1|Name=Ggra4003.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MTVDEALRRQQTVTELELHRTQSSRLEKRHRELEEAINALKDQEDEPVLY
CIGKPAFLQLSVGKARSLLRQEKNTVWEEIDRVQRAIVKLERRLEGLSAS
S*
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mRNA from alignment at tig00000908_pilon:321470..321775-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4003.t1 ID=Ggra4003.t1|Name=Ggra4003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000908_pilon:321470..321775- (Gracilaria gracilis GNS1m male)
ATGACTGTTGACGAGGCGTTGCGAAGGCAGCAAACCGTGACAGAACTCGA
ACTGCACAGAACACAGTCTTCGCGGCTCGAGAAGAGACATCGAGAACTGG
AAGAAGCCATTAACGCTCTGAAAGACCAGGAAGATGAGCCCGTTCTGTAT
TGCATTGGTAAACCGGCATTCTTGCAGTTATCAGTTGGAAAAGCCAGGTC
ATTGCTGAGGCAGGAGAAGAACACTGTTTGGGAGGAGATTGATAGGGTAC
AACGCGCCATTGTGAAACTTGAACGTCGACTAGAAGGTCTTTCCGCATCG
AGCTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:321470..321775-

>Ggra4003.t1 ID=Ggra4003.t1|Name=Ggra4003.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000908_pilon:321470..321775- (Gracilaria gracilis GNS1m male)
ATGACTGTTGACGAGGCGTTGCGAAGGCAGCAAACCGTGACAGAACTCGA
ACTGCACAGAACACAGTCTTCGCGGCTCGAGAAGAGACATCGAGAACTGG
AAGAAGCCATTAACGCTCTGAAAGACCAGGAAGATGAGCCCGTTCTGTAT
TGCATTGGTAAACCGGCATTCTTGCAGTTATCAGTTGGAAAAGCCAGGTC
ATTGCTGAGGCAGGAGAAGAACACTGTTTGGGAGGAGATTGATAGGGTAC
AACGCGCCATTGTGAAACTTGAACGTCGACTAGAAGGTCTTTCCGCATCG
AGCTGA
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