Ggra3999.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3999.t1
Unique Name	Ggra3999.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:312780..313481 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005850247.1
PFAMs	Pkinase
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K08850
Evalue	1.99e-81
EggNOG OGs	KOG0580@1\|root,KOG0580@2759\|Eukaryota,37ID2@33090\|Viridiplantae,34HA8@3041\|Chlorophyta
EC	2.7.11.1
Description	Pfam 00069 Protein kinase domain PROFILE entry PS50011 Protein kinases signatures and profile Eukaryotic protein kinases 1,2,3,4,5 are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common to both serine threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. We have selected two of these regions to build signature patterns. The first region, which is located in the N-terminal extremity of the catalytic domain, is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. The second region, which is located in the central part of the catalytic domain, contains a conserved aspartic acid residue which is important for the catalytic activity of the enzyme 6
COG category	D
BRITE	ko00000,ko01000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3999	Ggra3999	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 312780..313481 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3999.t1.stop1	Ggra3999.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 312780..312782 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3999.t1.CDS1	Ggra3999.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 312780..313481 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3999.t1.exon1	Ggra3999.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 312780..313481 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3999.t1.start1	Ggra3999.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 313479..313481 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3999.t1	Ggra3999.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 312780..313481 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:312780..313481-
coding sequence from alignment at tig00000908_pilon:312780..313481-

mRNA sequence

>Ggra3999.t1 ID=Ggra3999.t1|Name=Ggra3999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MKKNDIIRERQEKQVRREIEIQSQLIHPNILRLYGFFYDSTRIYLILEYA
AGGELYRHLKSCGGTFDEATAARYVASLASAIRYCHSKGVIHRDLKPENI
LLDADNNAKIADFGWSVHAVRAARRGTLCGTLDFLAPEMCENRQYDNSVD
LWSLGVLLYEMLYGKPPFEEHDSWHTKQRIQSVDLHFPGGAISEEAKHLI
RCLLRKVPSERLSLPKLLCHPWILMHTKEVDKR*

spliced messenger RNA

>Ggra3999.t1 ID=Ggra3999.t1|Name=Ggra3999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000908_pilon:312780..313481- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGAACGACATCATCCGCGAGCGACAGGAGAAGCAGGTGCGTCG
CGAGATTGAGATTCAGAGCCAGCTTATTCACCCCAACATTCTTCGGCTGT
ACGGCTTTTTCTACGACAGCACGCGCATCTACCTCATCCTCGAGTACGCG
GCGGGCGGCGAGCTGTACCGCCACCTCAAGAGCTGCGGCGGCACGTTTGA
TGAAGCTACGGCGGCGCGGTACGTGGCGTCGCTTGCGAGCGCTATTCGCT
ACTGCCACTCCAAGGGCGTGATTCATCGCGACCTCAAGCCGGAGAACATC
TTGCTGGACGCTGATAACAACGCCAAGATTGCGGACTTTGGGTGGAGCGT
GCACGCGGTGCGCGCGGCCAGACGGGGCACTCTTTGCGGCACGCTGGACT
TTCTGGCGCCCGAGATGTGCGAGAACCGACAGTACGACAACAGCGTGGAC
TTGTGGTCGCTGGGCGTGCTGTTGTATGAAATGCTGTACGGCAAACCGCC
GTTTGAAGAGCACGACAGTTGGCACACCAAGCAGCGCATCCAAAGCGTGG
ACCTGCACTTTCCCGGCGGCGCCATCAGCGAGGAGGCAAAGCACCTGATC
CGGTGCTTGCTGCGAAAGGTGCCGTCGGAACGGCTGTCACTACCAAAGCT
GTTATGCCATCCGTGGATTTTGATGCACACCAAGGAGGTGGACAAGAGAT
AG

protein sequence of Ggra3999.t1

>Ggra3999.t1 ID=Ggra3999.t1|Name=Ggra3999.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MKKNDIIRERQEKQVRREIEIQSQLIHPNILRLYGFFYDSTRIYLILEYA
AGGELYRHLKSCGGTFDEATAARYVASLASAIRYCHSKGVIHRDLKPENI
LLDADNNAKIADFGWSVHAVRAARRGTLCGTLDFLAPEMCENRQYDNSVD
LWSLGVLLYEMLYGKPPFEEHDSWHTKQRIQSVDLHFPGGAISEEAKHLI
RCLLRKVPSERLSLPKLLCHPWILMHTKEVDKR*

mRNA from alignment at tig00000908_pilon:312780..313481-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3999.t1 ID=Ggra3999.t1|Name=Ggra3999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000908_pilon:312780..313481- (Gracilaria gracilis GNS1m male)
ATGAAGAAGAACGACATCATCCGCGAGCGACAGGAGAAGCAGGTGCGTCG
CGAGATTGAGATTCAGAGCCAGCTTATTCACCCCAACATTCTTCGGCTGT
ACGGCTTTTTCTACGACAGCACGCGCATCTACCTCATCCTCGAGTACGCG
GCGGGCGGCGAGCTGTACCGCCACCTCAAGAGCTGCGGCGGCACGTTTGA
TGAAGCTACGGCGGCGCGGTACGTGGCGTCGCTTGCGAGCGCTATTCGCT
ACTGCCACTCCAAGGGCGTGATTCATCGCGACCTCAAGCCGGAGAACATC
TTGCTGGACGCTGATAACAACGCCAAGATTGCGGACTTTGGGTGGAGCGT
GCACGCGGTGCGCGCGGCCAGACGGGGCACTCTTTGCGGCACGCTGGACT
TTCTGGCGCCCGAGATGTGCGAGAACCGACAGTACGACAACAGCGTGGAC
TTGTGGTCGCTGGGCGTGCTGTTGTATGAAATGCTGTACGGCAAACCGCC
GTTTGAAGAGCACGACAGTTGGCACACCAAGCAGCGCATCCAAAGCGTGG
ACCTGCACTTTCCCGGCGGCGCCATCAGCGAGGAGGCAAAGCACCTGATC
CGGTGCTTGCTGCGAAAGGTGCCGTCGGAACGGCTGTCACTACCAAAGCT
GTTATGCCATCCGTGGATTTTGATGCACACCAAGGAGGTGGACAAGAGAT
AG

Coding sequence (CDS) from alignment at tig00000908_pilon:312780..313481-

>Ggra3999.t1 ID=Ggra3999.t1|Name=Ggra3999.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000908_pilon:312780..313481- (Gracilaria gracilis GNS1m male)
ATGAAGAAGAACGACATCATCCGCGAGCGACAGGAGAAGCAGGTGCGTCG
CGAGATTGAGATTCAGAGCCAGCTTATTCACCCCAACATTCTTCGGCTGT
ACGGCTTTTTCTACGACAGCACGCGCATCTACCTCATCCTCGAGTACGCG
GCGGGCGGCGAGCTGTACCGCCACCTCAAGAGCTGCGGCGGCACGTTTGA
TGAAGCTACGGCGGCGCGGTACGTGGCGTCGCTTGCGAGCGCTATTCGCT
ACTGCCACTCCAAGGGCGTGATTCATCGCGACCTCAAGCCGGAGAACATC
TTGCTGGACGCTGATAACAACGCCAAGATTGCGGACTTTGGGTGGAGCGT
GCACGCGGTGCGCGCGGCCAGACGGGGCACTCTTTGCGGCACGCTGGACT
TTCTGGCGCCCGAGATGTGCGAGAACCGACAGTACGACAACAGCGTGGAC
TTGTGGTCGCTGGGCGTGCTGTTGTATGAAATGCTGTACGGCAAACCGCC
GTTTGAAGAGCACGACAGTTGGCACACCAAGCAGCGCATCCAAAGCGTGG
ACCTGCACTTTCCCGGCGGCGCCATCAGCGAGGAGGCAAAGCACCTGATC
CGGTGCTTGCTGCGAAAGGTGCCGTCGGAACGGCTGTCACTACCAAAGCT
GTTATGCCATCCGTGGATTTTGATGCACACCAAGGAGGTGGACAAGAGAT
AG