Ggra3996.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3996.t1
Unique NameGgra3996.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:307176..308318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708282.1
Max annot lvl2759|Eukaryota
Evalue2.74e-60
EggNOG OGs2CZMN@1|root,2SAXR@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3996Ggra3996Gracilaria gracilis GNS1m malegenetig00000908_pilon 307176..308318 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3996.t1.stop1Ggra3996.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 307176..307178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3996.t1.CDS1Ggra3996.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 307176..308318 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3996.t1.exon1Ggra3996.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 307176..308318 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3996.t1.start1Ggra3996.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 308316..308318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3996.t1Ggra3996.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 307176..308318 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3996.t1 ID=Ggra3996.t1|Name=Ggra3996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MVRAPRIFELPCFRRLYPKPAMYAKSRLPPFVKLLFPVLHFCRRRRATLT
IVFLLVWIFVDMDTYPLWWLSWMLHGPPKADPALSHNCSKADRSSLHPLV
VVVPLIASQLLRVEDSLKRWLLPSLFPCQPHAPPTAHLSFFFDRPPSDAA
TARAVDRLRLLLSARRLATVLQTCFAEVSIQFANLSVSHSTNSHSMDVLH
NLVITAGSNNQFEAAIRLYEHRYSHMLLMEPDVYAIRAGWVQRALAEARY
GTFWQRGAIMRYSPRFNMGFAPFRNRYQRHINGNGLYRLSDRCFDHYRSL
VKKRYGNGAYDVAMCQFRLSVENLAIYQATAHRFQVSAMIVSIGVTKVKE
EDLRSQFEEALLVHGKAQYVPFPALNVMQY*
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spliced messenger RNA

>Ggra3996.t1 ID=Ggra3996.t1|Name=Ggra3996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000908_pilon:307176..308318- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGCGCCGCGAATCTTCGAGCTTCCGTGCTTCCGCCGCCTCTA
CCCAAAGCCCGCCATGTACGCAAAGTCGCGCCTGCCGCCCTTTGTCAAGC
TGCTGTTCCCGGTGCTGCACTTTTGCCGCCGCCGCCGCGCCACCCTCACC
ATCGTCTTTTTGCTGGTGTGGATCTTCGTCGACATGGACACCTACCCGCT
ATGGTGGCTGTCATGGATGCTACACGGCCCTCCAAAAGCCGATCCCGCGC
TGTCGCACAATTGCTCCAAAGCCGACCGCTCCTCGCTGCACCCGCTGGTC
GTGGTGGTGCCGCTCATCGCGTCGCAGCTGCTGCGCGTGGAGGACTCGCT
CAAACGATGGCTGCTGCCGTCGCTCTTCCCCTGCCAACCGCACGCGCCGC
CCACCGCCCACCTGTCCTTTTTCTTCGATCGCCCGCCCTCCGACGCCGCC
ACTGCGCGCGCCGTCGACCGCCTGCGACTGCTGCTCAGCGCGCGTCGCCT
CGCCACCGTGCTGCAGACGTGCTTTGCAGAAGTGTCCATCCAGTTTGCAA
ACCTCAGCGTGTCGCACTCCACCAACAGCCACTCCATGGACGTGCTGCAC
AACCTGGTCATCACCGCGGGTAGTAACAACCAGTTTGAGGCCGCCATCAG
GCTGTACGAGCACCGCTACAGCCACATGCTGCTGATGGAGCCCGACGTGT
ACGCCATCCGCGCCGGCTGGGTGCAGCGCGCGCTGGCAGAAGCGCGCTAC
GGTACGTTTTGGCAACGAGGCGCCATCATGCGTTACTCGCCGCGCTTCAA
CATGGGCTTTGCGCCGTTTCGAAACCGCTACCAGCGCCACATCAACGGCA
ACGGGCTGTATCGTCTGTCGGACCGCTGCTTTGACCACTACCGCTCGCTG
GTGAAGAAACGGTATGGAAACGGCGCGTACGACGTGGCCATGTGCCAGTT
CCGACTGTCGGTAGAAAACTTAGCCATTTATCAAGCAACGGCGCACCGCT
TTCAGGTTAGCGCCATGATTGTGTCCATCGGCGTCACCAAAGTAAAAGAA
GAGGATTTGAGAAGCCAATTTGAAGAGGCGCTGCTGGTGCACGGCAAGGC
GCAATACGTCCCATTCCCAGCTCTCAACGTGATGCAATACTGA
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protein sequence of Ggra3996.t1

>Ggra3996.t1 ID=Ggra3996.t1|Name=Ggra3996.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MVRAPRIFELPCFRRLYPKPAMYAKSRLPPFVKLLFPVLHFCRRRRATLT
IVFLLVWIFVDMDTYPLWWLSWMLHGPPKADPALSHNCSKADRSSLHPLV
VVVPLIASQLLRVEDSLKRWLLPSLFPCQPHAPPTAHLSFFFDRPPSDAA
TARAVDRLRLLLSARRLATVLQTCFAEVSIQFANLSVSHSTNSHSMDVLH
NLVITAGSNNQFEAAIRLYEHRYSHMLLMEPDVYAIRAGWVQRALAEARY
GTFWQRGAIMRYSPRFNMGFAPFRNRYQRHINGNGLYRLSDRCFDHYRSL
VKKRYGNGAYDVAMCQFRLSVENLAIYQATAHRFQVSAMIVSIGVTKVKE
EDLRSQFEEALLVHGKAQYVPFPALNVMQY*
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mRNA from alignment at tig00000908_pilon:307176..308318-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3996.t1 ID=Ggra3996.t1|Name=Ggra3996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000908_pilon:307176..308318- (Gracilaria gracilis GNS1m male)
ATGGTGCGAGCGCCGCGAATCTTCGAGCTTCCGTGCTTCCGCCGCCTCTA
CCCAAAGCCCGCCATGTACGCAAAGTCGCGCCTGCCGCCCTTTGTCAAGC
TGCTGTTCCCGGTGCTGCACTTTTGCCGCCGCCGCCGCGCCACCCTCACC
ATCGTCTTTTTGCTGGTGTGGATCTTCGTCGACATGGACACCTACCCGCT
ATGGTGGCTGTCATGGATGCTACACGGCCCTCCAAAAGCCGATCCCGCGC
TGTCGCACAATTGCTCCAAAGCCGACCGCTCCTCGCTGCACCCGCTGGTC
GTGGTGGTGCCGCTCATCGCGTCGCAGCTGCTGCGCGTGGAGGACTCGCT
CAAACGATGGCTGCTGCCGTCGCTCTTCCCCTGCCAACCGCACGCGCCGC
CCACCGCCCACCTGTCCTTTTTCTTCGATCGCCCGCCCTCCGACGCCGCC
ACTGCGCGCGCCGTCGACCGCCTGCGACTGCTGCTCAGCGCGCGTCGCCT
CGCCACCGTGCTGCAGACGTGCTTTGCAGAAGTGTCCATCCAGTTTGCAA
ACCTCAGCGTGTCGCACTCCACCAACAGCCACTCCATGGACGTGCTGCAC
AACCTGGTCATCACCGCGGGTAGTAACAACCAGTTTGAGGCCGCCATCAG
GCTGTACGAGCACCGCTACAGCCACATGCTGCTGATGGAGCCCGACGTGT
ACGCCATCCGCGCCGGCTGGGTGCAGCGCGCGCTGGCAGAAGCGCGCTAC
GGTACGTTTTGGCAACGAGGCGCCATCATGCGTTACTCGCCGCGCTTCAA
CATGGGCTTTGCGCCGTTTCGAAACCGCTACCAGCGCCACATCAACGGCA
ACGGGCTGTATCGTCTGTCGGACCGCTGCTTTGACCACTACCGCTCGCTG
GTGAAGAAACGGTATGGAAACGGCGCGTACGACGTGGCCATGTGCCAGTT
CCGACTGTCGGTAGAAAACTTAGCCATTTATCAAGCAACGGCGCACCGCT
TTCAGGTTAGCGCCATGATTGTGTCCATCGGCGTCACCAAAGTAAAAGAA
GAGGATTTGAGAAGCCAATTTGAAGAGGCGCTGCTGGTGCACGGCAAGGC
GCAATACGTCCCATTCCCAGCTCTCAACGTGATGCAATACTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:307176..308318-

>Ggra3996.t1 ID=Ggra3996.t1|Name=Ggra3996.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000908_pilon:307176..308318- (Gracilaria gracilis GNS1m male)
ATGGTGCGAGCGCCGCGAATCTTCGAGCTTCCGTGCTTCCGCCGCCTCTA
CCCAAAGCCCGCCATGTACGCAAAGTCGCGCCTGCCGCCCTTTGTCAAGC
TGCTGTTCCCGGTGCTGCACTTTTGCCGCCGCCGCCGCGCCACCCTCACC
ATCGTCTTTTTGCTGGTGTGGATCTTCGTCGACATGGACACCTACCCGCT
ATGGTGGCTGTCATGGATGCTACACGGCCCTCCAAAAGCCGATCCCGCGC
TGTCGCACAATTGCTCCAAAGCCGACCGCTCCTCGCTGCACCCGCTGGTC
GTGGTGGTGCCGCTCATCGCGTCGCAGCTGCTGCGCGTGGAGGACTCGCT
CAAACGATGGCTGCTGCCGTCGCTCTTCCCCTGCCAACCGCACGCGCCGC
CCACCGCCCACCTGTCCTTTTTCTTCGATCGCCCGCCCTCCGACGCCGCC
ACTGCGCGCGCCGTCGACCGCCTGCGACTGCTGCTCAGCGCGCGTCGCCT
CGCCACCGTGCTGCAGACGTGCTTTGCAGAAGTGTCCATCCAGTTTGCAA
ACCTCAGCGTGTCGCACTCCACCAACAGCCACTCCATGGACGTGCTGCAC
AACCTGGTCATCACCGCGGGTAGTAACAACCAGTTTGAGGCCGCCATCAG
GCTGTACGAGCACCGCTACAGCCACATGCTGCTGATGGAGCCCGACGTGT
ACGCCATCCGCGCCGGCTGGGTGCAGCGCGCGCTGGCAGAAGCGCGCTAC
GGTACGTTTTGGCAACGAGGCGCCATCATGCGTTACTCGCCGCGCTTCAA
CATGGGCTTTGCGCCGTTTCGAAACCGCTACCAGCGCCACATCAACGGCA
ACGGGCTGTATCGTCTGTCGGACCGCTGCTTTGACCACTACCGCTCGCTG
GTGAAGAAACGGTATGGAAACGGCGCGTACGACGTGGCCATGTGCCAGTT
CCGACTGTCGGTAGAAAACTTAGCCATTTATCAAGCAACGGCGCACCGCT
TTCAGGTTAGCGCCATGATTGTGTCCATCGGCGTCACCAAAGTAAAAGAA
GAGGATTTGAGAAGCCAATTTGAAGAGGCGCTGCTGGTGCACGGCAAGGC
GCAATACGTCCCATTCCCAGCTCTCAACGTGATGCAATACTGA
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