Ggra3994.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3994.t1
Unique NameGgra3994.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:304256..305443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704568.1
Preferred nameLCMT2
PFAMsCupin_8,Kelch_4,Kelch_6,LCM
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K01358,ko:K09272,ko:K15451,ko:K18066,ko:K18203
KEGG ReactionR10586,R10587
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009966,GO:0009968,GO:0009987,GO:0010340,GO:0010467,GO:0010646,GO:0010648,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0019538,GO:0023051,GO:0023057,GO:0030488,GO:0031590,GO:0031591,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051998,GO:0065007,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue3.77e-45
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota
EC1.14.11.42,2.1.1.233,2.1.1.290,2.3.1.231,3.4.21.92
Descriptionprotein C-terminal leucine carboxyl O-methyltransferase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3994Ggra3994Gracilaria gracilis GNS1m malegenetig00000908_pilon 304256..305443 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3994.t1.start1Ggra3994.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 304256..304258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3994.t1.CDS1Ggra3994.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 304256..305443 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3994.t1.exon1Ggra3994.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 304256..305443 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3994.t1.stop1Ggra3994.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 305441..305443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3994.t1Ggra3994.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 304256..305443 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3994.t1 ID=Ggra3994.t1|Name=Ggra3994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MSSKGRSNTRVATDDAPLIATNDDAFQSKVAAMRAGYFRDAALAKMAEKY
TAIHVNYGQFRRPPVINRGTYARVLLKETLVEAFLKRSGIHGKVPQIISL
GAGFDTHPFALVKNASGVPPFHYVELDFPQVISEKTTIANEALCEKEKII
SFAADKEAQGMDAVVKQHESVDLKECTDSMKAKSVQLKDGNLCIYSMRGV
DLRDVKKLEAVLDDVALSSEAPTLILAEIVLVYMETEHSDALVSFFSKRF
TGSRAFIVIEHTCRREDSEFGKQMVLNIAARGSPLLGLRSYPTMESQKER
FKKLGWSFVKVESLLRAFEKRVVQRLALNKIEILDEVEEWSLIMSHYCIV
CATEGDCAEQLLDWLDVGRYHDFGFRCYERDGSEAGAGVKMNVDV*
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spliced messenger RNA

>Ggra3994.t1 ID=Ggra3994.t1|Name=Ggra3994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000908_pilon:304256..305443+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCAAAGGTCGTAGCAACACAAGGGTTGCAACAGATGACGCCCC
ACTAATCGCCACCAACGATGACGCATTTCAGTCCAAGGTTGCGGCCATGC
GAGCCGGTTACTTTCGAGACGCCGCACTAGCCAAAATGGCCGAAAAGTAC
ACAGCAATCCACGTGAATTATGGCCAATTCCGGCGTCCACCCGTCATCAA
CAGAGGGACATATGCACGAGTTTTGCTTAAGGAAACCCTGGTGGAGGCTT
TTCTCAAGCGCTCTGGTATTCATGGAAAGGTGCCACAGATAATATCACTT
GGAGCTGGATTCGATACACACCCGTTTGCTCTGGTGAAGAACGCCAGTGG
GGTTCCTCCATTTCATTATGTGGAGCTTGATTTCCCACAGGTTATCTCTG
AGAAGACAACCATTGCGAATGAAGCCCTTTGTGAGAAAGAGAAAATAATA
TCGTTTGCTGCCGACAAGGAAGCACAGGGGATGGATGCTGTCGTAAAGCA
ACATGAATCAGTGGATTTGAAAGAATGCACGGATAGCATGAAGGCGAAAA
GTGTGCAACTGAAAGATGGGAATTTGTGCATTTACTCAATGAGAGGGGTG
GACCTTCGAGATGTGAAGAAGCTCGAAGCCGTTCTTGATGATGTTGCTCT
ATCATCAGAGGCACCCACGCTGATCCTGGCTGAGATTGTTCTGGTGTATA
TGGAAACAGAGCACTCTGACGCACTTGTCTCTTTCTTTTCCAAAAGGTTC
ACCGGATCGCGAGCATTCATTGTGATTGAACACACTTGTCGTCGTGAAGA
CAGTGAATTTGGCAAACAAATGGTTCTCAACATTGCGGCGCGAGGAAGCC
CTCTGCTGGGGCTGCGCTCTTACCCAACAATGGAATCACAAAAGGAACGA
TTCAAAAAGCTCGGGTGGTCGTTTGTCAAGGTGGAAAGCCTTCTGCGAGC
GTTTGAGAAGCGAGTGGTGCAGCGCCTTGCGTTAAACAAAATTGAGATAC
TGGACGAGGTTGAGGAATGGAGTCTGATCATGTCGCACTATTGCATTGTA
TGTGCGACAGAAGGAGATTGTGCGGAGCAGTTGTTAGATTGGCTGGATGT
TGGCAGATACCATGATTTTGGTTTCCGTTGTTACGAACGCGATGGGAGCG
AGGCGGGCGCTGGAGTAAAAATGAATGTTGATGTTTGA
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protein sequence of Ggra3994.t1

>Ggra3994.t1 ID=Ggra3994.t1|Name=Ggra3994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MSSKGRSNTRVATDDAPLIATNDDAFQSKVAAMRAGYFRDAALAKMAEKY
TAIHVNYGQFRRPPVINRGTYARVLLKETLVEAFLKRSGIHGKVPQIISL
GAGFDTHPFALVKNASGVPPFHYVELDFPQVISEKTTIANEALCEKEKII
SFAADKEAQGMDAVVKQHESVDLKECTDSMKAKSVQLKDGNLCIYSMRGV
DLRDVKKLEAVLDDVALSSEAPTLILAEIVLVYMETEHSDALVSFFSKRF
TGSRAFIVIEHTCRREDSEFGKQMVLNIAARGSPLLGLRSYPTMESQKER
FKKLGWSFVKVESLLRAFEKRVVQRLALNKIEILDEVEEWSLIMSHYCIV
CATEGDCAEQLLDWLDVGRYHDFGFRCYERDGSEAGAGVKMNVDV*
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mRNA from alignment at tig00000908_pilon:304256..305443+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3994.t1 ID=Ggra3994.t1|Name=Ggra3994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000908_pilon:304256..305443+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCAAAGGTCGTAGCAACACAAGGGTTGCAACAGATGACGCCCC
ACTAATCGCCACCAACGATGACGCATTTCAGTCCAAGGTTGCGGCCATGC
GAGCCGGTTACTTTCGAGACGCCGCACTAGCCAAAATGGCCGAAAAGTAC
ACAGCAATCCACGTGAATTATGGCCAATTCCGGCGTCCACCCGTCATCAA
CAGAGGGACATATGCACGAGTTTTGCTTAAGGAAACCCTGGTGGAGGCTT
TTCTCAAGCGCTCTGGTATTCATGGAAAGGTGCCACAGATAATATCACTT
GGAGCTGGATTCGATACACACCCGTTTGCTCTGGTGAAGAACGCCAGTGG
GGTTCCTCCATTTCATTATGTGGAGCTTGATTTCCCACAGGTTATCTCTG
AGAAGACAACCATTGCGAATGAAGCCCTTTGTGAGAAAGAGAAAATAATA
TCGTTTGCTGCCGACAAGGAAGCACAGGGGATGGATGCTGTCGTAAAGCA
ACATGAATCAGTGGATTTGAAAGAATGCACGGATAGCATGAAGGCGAAAA
GTGTGCAACTGAAAGATGGGAATTTGTGCATTTACTCAATGAGAGGGGTG
GACCTTCGAGATGTGAAGAAGCTCGAAGCCGTTCTTGATGATGTTGCTCT
ATCATCAGAGGCACCCACGCTGATCCTGGCTGAGATTGTTCTGGTGTATA
TGGAAACAGAGCACTCTGACGCACTTGTCTCTTTCTTTTCCAAAAGGTTC
ACCGGATCGCGAGCATTCATTGTGATTGAACACACTTGTCGTCGTGAAGA
CAGTGAATTTGGCAAACAAATGGTTCTCAACATTGCGGCGCGAGGAAGCC
CTCTGCTGGGGCTGCGCTCTTACCCAACAATGGAATCACAAAAGGAACGA
TTCAAAAAGCTCGGGTGGTCGTTTGTCAAGGTGGAAAGCCTTCTGCGAGC
GTTTGAGAAGCGAGTGGTGCAGCGCCTTGCGTTAAACAAAATTGAGATAC
TGGACGAGGTTGAGGAATGGAGTCTGATCATGTCGCACTATTGCATTGTA
TGTGCGACAGAAGGAGATTGTGCGGAGCAGTTGTTAGATTGGCTGGATGT
TGGCAGATACCATGATTTTGGTTTCCGTTGTTACGAACGCGATGGGAGCG
AGGCGGGCGCTGGAGTAAAAATGAATGTTGATGTTTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:304256..305443+

>Ggra3994.t1 ID=Ggra3994.t1|Name=Ggra3994.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000908_pilon:304256..305443+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCAAAGGTCGTAGCAACACAAGGGTTGCAACAGATGACGCCCC
ACTAATCGCCACCAACGATGACGCATTTCAGTCCAAGGTTGCGGCCATGC
GAGCCGGTTACTTTCGAGACGCCGCACTAGCCAAAATGGCCGAAAAGTAC
ACAGCAATCCACGTGAATTATGGCCAATTCCGGCGTCCACCCGTCATCAA
CAGAGGGACATATGCACGAGTTTTGCTTAAGGAAACCCTGGTGGAGGCTT
TTCTCAAGCGCTCTGGTATTCATGGAAAGGTGCCACAGATAATATCACTT
GGAGCTGGATTCGATACACACCCGTTTGCTCTGGTGAAGAACGCCAGTGG
GGTTCCTCCATTTCATTATGTGGAGCTTGATTTCCCACAGGTTATCTCTG
AGAAGACAACCATTGCGAATGAAGCCCTTTGTGAGAAAGAGAAAATAATA
TCGTTTGCTGCCGACAAGGAAGCACAGGGGATGGATGCTGTCGTAAAGCA
ACATGAATCAGTGGATTTGAAAGAATGCACGGATAGCATGAAGGCGAAAA
GTGTGCAACTGAAAGATGGGAATTTGTGCATTTACTCAATGAGAGGGGTG
GACCTTCGAGATGTGAAGAAGCTCGAAGCCGTTCTTGATGATGTTGCTCT
ATCATCAGAGGCACCCACGCTGATCCTGGCTGAGATTGTTCTGGTGTATA
TGGAAACAGAGCACTCTGACGCACTTGTCTCTTTCTTTTCCAAAAGGTTC
ACCGGATCGCGAGCATTCATTGTGATTGAACACACTTGTCGTCGTGAAGA
CAGTGAATTTGGCAAACAAATGGTTCTCAACATTGCGGCGCGAGGAAGCC
CTCTGCTGGGGCTGCGCTCTTACCCAACAATGGAATCACAAAAGGAACGA
TTCAAAAAGCTCGGGTGGTCGTTTGTCAAGGTGGAAAGCCTTCTGCGAGC
GTTTGAGAAGCGAGTGGTGCAGCGCCTTGCGTTAAACAAAATTGAGATAC
TGGACGAGGTTGAGGAATGGAGTCTGATCATGTCGCACTATTGCATTGTA
TGTGCGACAGAAGGAGATTGTGCGGAGCAGTTGTTAGATTGGCTGGATGT
TGGCAGATACCATGATTTTGGTTTCCGTTGTTACGAACGCGATGGGAGCG
AGGCGGGCGCTGGAGTAAAAATGAATGTTGATGTTTGA
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