Ggra3990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3990.t1
Unique Name	Ggra3990.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:297782..298918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_07695T0
PFAMs	M20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00064,RC00300
KEGG ko	ko:K01438
KEGG Reaction	R00669,R09107
KEGG Pathway	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00028,M00845
GOs	GO:0003674,GO:0003824,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009636,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0042219,GO:0042221,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0070011,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990748
Evalue	1.87e-58
EggNOG OGs	COG0402@1\|root,COG0624@1\|root,KOG2275@2759\|Eukaryota,KOG3968@2759\|Eukaryota,38BH3@33154\|Opisthokonta
EC	3.5.1.16
Description	peptidase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3990	Ggra3990	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 297782..298918 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3990.t1.start1	Ggra3990.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 297782..297784 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3990.t1.CDS1	Ggra3990.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 297782..298918 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3990.t1.exon1	Ggra3990.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 297782..298918 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3990.t1.stop1	Ggra3990.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 298916..298918 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3990.t1	Ggra3990.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 297782..298918 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:297782..298918+
coding sequence from alignment at tig00000908_pilon:297782..298918+

mRNA sequence

>Ggra3990.t1 ID=Ggra3990.t1|Name=Ggra3990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MVTATAHEQRLPTQTTSSNKHTAFLVIALLPIVFLSLTSRRFTPASDVVT
LTQQLVNIPSPSGCEQRALQHAKSWFVARGWKVVTHPVPPSFAILATLAS
PSSVRVLLSTHLDVVPGAAHSRVAHGRLYGRGAVDAKGQAASLMLAAASL
RDERVAVLLVPREETDHAGMAAAHAFGVPRNITLMNGEPTEAKLVEKQKG
MLKVMLKANGVSAHSGYPHLGRSAVHDLVQVVSAIVNTWPDSGETTVNVG
VIEGGTAPNVLAGEATARVLWRVSTTVSEVLSKLEQILSQHDHVSYEITT
RNEPLAFHVPPKAASRFGIGQVAYNTDVPYYKGGYKHAVLFGAGSIEQAH
TQDEWISIEQLQRLPDQLEVIVSELLQS*

spliced messenger RNA

>Ggra3990.t1 ID=Ggra3990.t1|Name=Ggra3990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000908_pilon:297782..298918+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACTGCCACGGCCCATGAACAGCGCCTACCTACACAAACCACGTC
ATCCAATAAGCACACCGCCTTTCTCGTGATTGCTCTTCTTCCCATCGTGT
TCCTATCACTTACATCACGCCGTTTCACACCCGCTTCCGACGTTGTCACC
CTCACGCAGCAGTTGGTAAACATTCCAAGTCCCAGTGGATGCGAGCAACG
CGCATTGCAACACGCGAAGAGCTGGTTTGTCGCGCGAGGTTGGAAAGTCG
TCACACATCCTGTACCACCGTCGTTTGCGATTCTCGCCACGCTAGCTTCC
CCTTCTTCCGTGCGCGTCCTGCTGTCCACTCATCTCGACGTTGTGCCTGG
TGCCGCCCACTCGCGTGTAGCACACGGCCGTCTGTACGGAAGAGGCGCTG
TGGATGCCAAGGGACAGGCTGCCTCGCTTATGCTTGCCGCCGCCAGTCTG
CGCGATGAACGTGTAGCTGTCTTGCTTGTTCCTCGCGAGGAGACCGACCA
CGCTGGGATGGCAGCCGCACATGCGTTTGGCGTGCCTCGTAATATCACGC
TGATGAATGGGGAGCCCACAGAAGCCAAACTTGTAGAGAAACAGAAGGGA
ATGCTCAAAGTGATGCTCAAAGCGAACGGTGTTTCAGCGCACAGTGGTTA
CCCACATCTTGGTCGATCGGCCGTTCACGATCTGGTACAAGTCGTCAGTG
CTATTGTTAACACATGGCCGGACAGTGGTGAGACAACCGTCAATGTTGGT
GTTATTGAGGGCGGGACGGCTCCTAATGTTCTGGCCGGAGAAGCGACAGC
TCGAGTATTGTGGCGGGTATCGACAACAGTATCTGAAGTTTTATCGAAAC
TGGAACAGATATTGTCACAACACGACCACGTTAGTTACGAGATAACTACC
AGAAACGAGCCCTTGGCATTCCACGTACCACCTAAGGCTGCGTCCAGGTT
TGGCATAGGTCAGGTGGCGTATAACACCGATGTGCCGTACTACAAGGGCG
GCTACAAGCATGCGGTTCTATTCGGCGCCGGTAGTATAGAACAAGCACAC
ACTCAAGACGAGTGGATATCGATTGAACAGCTTCAGAGACTTCCTGACCA
ACTAGAGGTAATCGTATCAGAATTGTTGCAAAGTTGA

protein sequence of Ggra3990.t1

>Ggra3990.t1 ID=Ggra3990.t1|Name=Ggra3990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MVTATAHEQRLPTQTTSSNKHTAFLVIALLPIVFLSLTSRRFTPASDVVT
LTQQLVNIPSPSGCEQRALQHAKSWFVARGWKVVTHPVPPSFAILATLAS
PSSVRVLLSTHLDVVPGAAHSRVAHGRLYGRGAVDAKGQAASLMLAAASL
RDERVAVLLVPREETDHAGMAAAHAFGVPRNITLMNGEPTEAKLVEKQKG
MLKVMLKANGVSAHSGYPHLGRSAVHDLVQVVSAIVNTWPDSGETTVNVG
VIEGGTAPNVLAGEATARVLWRVSTTVSEVLSKLEQILSQHDHVSYEITT
RNEPLAFHVPPKAASRFGIGQVAYNTDVPYYKGGYKHAVLFGAGSIEQAH
TQDEWISIEQLQRLPDQLEVIVSELLQS*

mRNA from alignment at tig00000908_pilon:297782..298918+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3990.t1 ID=Ggra3990.t1|Name=Ggra3990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000908_pilon:297782..298918+ (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCACGGCCCATGAACAGCGCCTACCTACACAAACCACGTC
ATCCAATAAGCACACCGCCTTTCTCGTGATTGCTCTTCTTCCCATCGTGT
TCCTATCACTTACATCACGCCGTTTCACACCCGCTTCCGACGTTGTCACC
CTCACGCAGCAGTTGGTAAACATTCCAAGTCCCAGTGGATGCGAGCAACG
CGCATTGCAACACGCGAAGAGCTGGTTTGTCGCGCGAGGTTGGAAAGTCG
TCACACATCCTGTACCACCGTCGTTTGCGATTCTCGCCACGCTAGCTTCC
CCTTCTTCCGTGCGCGTCCTGCTGTCCACTCATCTCGACGTTGTGCCTGG
TGCCGCCCACTCGCGTGTAGCACACGGCCGTCTGTACGGAAGAGGCGCTG
TGGATGCCAAGGGACAGGCTGCCTCGCTTATGCTTGCCGCCGCCAGTCTG
CGCGATGAACGTGTAGCTGTCTTGCTTGTTCCTCGCGAGGAGACCGACCA
CGCTGGGATGGCAGCCGCACATGCGTTTGGCGTGCCTCGTAATATCACGC
TGATGAATGGGGAGCCCACAGAAGCCAAACTTGTAGAGAAACAGAAGGGA
ATGCTCAAAGTGATGCTCAAAGCGAACGGTGTTTCAGCGCACAGTGGTTA
CCCACATCTTGGTCGATCGGCCGTTCACGATCTGGTACAAGTCGTCAGTG
CTATTGTTAACACATGGCCGGACAGTGGTGAGACAACCGTCAATGTTGGT
GTTATTGAGGGCGGGACGGCTCCTAATGTTCTGGCCGGAGAAGCGACAGC
TCGAGTATTGTGGCGGGTATCGACAACAGTATCTGAAGTTTTATCGAAAC
TGGAACAGATATTGTCACAACACGACCACGTTAGTTACGAGATAACTACC
AGAAACGAGCCCTTGGCATTCCACGTACCACCTAAGGCTGCGTCCAGGTT
TGGCATAGGTCAGGTGGCGTATAACACCGATGTGCCGTACTACAAGGGCG
GCTACAAGCATGCGGTTCTATTCGGCGCCGGTAGTATAGAACAAGCACAC
ACTCAAGACGAGTGGATATCGATTGAACAGCTTCAGAGACTTCCTGACCA
ACTAGAGGTAATCGTATCAGAATTGTTGCAAAGTTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:297782..298918+

>Ggra3990.t1 ID=Ggra3990.t1|Name=Ggra3990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000908_pilon:297782..298918+ (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCACGGCCCATGAACAGCGCCTACCTACACAAACCACGTC
ATCCAATAAGCACACCGCCTTTCTCGTGATTGCTCTTCTTCCCATCGTGT
TCCTATCACTTACATCACGCCGTTTCACACCCGCTTCCGACGTTGTCACC
CTCACGCAGCAGTTGGTAAACATTCCAAGTCCCAGTGGATGCGAGCAACG
CGCATTGCAACACGCGAAGAGCTGGTTTGTCGCGCGAGGTTGGAAAGTCG
TCACACATCCTGTACCACCGTCGTTTGCGATTCTCGCCACGCTAGCTTCC
CCTTCTTCCGTGCGCGTCCTGCTGTCCACTCATCTCGACGTTGTGCCTGG
TGCCGCCCACTCGCGTGTAGCACACGGCCGTCTGTACGGAAGAGGCGCTG
TGGATGCCAAGGGACAGGCTGCCTCGCTTATGCTTGCCGCCGCCAGTCTG
CGCGATGAACGTGTAGCTGTCTTGCTTGTTCCTCGCGAGGAGACCGACCA
CGCTGGGATGGCAGCCGCACATGCGTTTGGCGTGCCTCGTAATATCACGC
TGATGAATGGGGAGCCCACAGAAGCCAAACTTGTAGAGAAACAGAAGGGA
ATGCTCAAAGTGATGCTCAAAGCGAACGGTGTTTCAGCGCACAGTGGTTA
CCCACATCTTGGTCGATCGGCCGTTCACGATCTGGTACAAGTCGTCAGTG
CTATTGTTAACACATGGCCGGACAGTGGTGAGACAACCGTCAATGTTGGT
GTTATTGAGGGCGGGACGGCTCCTAATGTTCTGGCCGGAGAAGCGACAGC
TCGAGTATTGTGGCGGGTATCGACAACAGTATCTGAAGTTTTATCGAAAC
TGGAACAGATATTGTCACAACACGACCACGTTAGTTACGAGATAACTACC
AGAAACGAGCCCTTGGCATTCCACGTACCACCTAAGGCTGCGTCCAGGTT
TGGCATAGGTCAGGTGGCGTATAACACCGATGTGCCGTACTACAAGGGCG
GCTACAAGCATGCGGTTCTATTCGGCGCCGGTAGTATAGAACAAGCACAC
ACTCAAGACGAGTGGATATCGATTGAACAGCTTCAGAGACTTCCTGACCA
ACTAGAGGTAATCGTATCAGAATTGTTGCAAAGTTGA