Ggra3989.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3989.t1
Unique NameGgra3989.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:296008..296955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002731245.1
Preferred nameASRGL1
PFAMsAsparaginase_2
Max annot lvl33208|Metazoa
KEGG koko:K13051
GOsGO:0003674,GO:0003824,GO:0004067,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006508,GO:0006520,GO:0006528,GO:0006530,GO:0006558,GO:0006559,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008798,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009066,GO:0009068,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0019439,GO:0019538,GO:0019752,GO:0032787,GO:0033345,GO:0034641,GO:0042737,GO:0043170,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0070011,GO:0071704,GO:0072329,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222
Evalue6.46e-93
EggNOG OGsCOG1446@1|root,KOG1592@2759|Eukaryota,38JIS@33154|Opisthokonta,3BB1E@33208|Metazoa,3CRC6@33213|Bilateria
EC3.4.19.5
Descriptionasparagine catabolic process via L-aspartate
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3989Ggra3989Gracilaria gracilis GNS1m malegenetig00000908_pilon 296008..296955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3989.t1.stop1Ggra3989.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 296008..296010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3989.t1.CDS1Ggra3989.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 296008..296955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3989.t1.exon1Ggra3989.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 296008..296955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3989.t1.start1Ggra3989.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 296953..296955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3989.t1Ggra3989.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 296008..296955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3989.t1 ID=Ggra3989.t1|Name=Ggra3989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MTNLPAHSRSHHRTPVIIVHGGAWAIPDATADATEASVRRAASIGHALLT
QSRSALDAVEAAVRHLEEDPLFDAGIGSCLTETGTVEMDAAVMYDAPSGL
RSGAVACVSNSVHPISVARGVMEQTQHCLLVGRGADAFSNHMGLGGASSD
QLVSSEAMKEWRNLRRFGNAVQTLFNGHDTVGAVAMDVHGNFASATSTGG
ITGKKLGRVGDSPIFGSGLFCDRNVGACSTTGHGESIMQVCLARNALALV
EWRNLSGEQACKNALQKMEEKTGGCGGIIMVDAKGNVSHSCTTKRMAWAS
INKSGSLMSGIDAST*
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spliced messenger RNA

>Ggra3989.t1 ID=Ggra3989.t1|Name=Ggra3989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000908_pilon:296008..296955- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAACCTTCCTGCTCATTCCCGGTCGCACCATCGCACCCCAGTCAT
CATTGTCCATGGTGGCGCATGGGCTATTCCGGACGCAACAGCCGACGCCA
CAGAAGCATCAGTCCGTCGTGCCGCCTCCATCGGCCATGCCTTACTGACG
CAATCGCGTTCCGCGTTAGATGCCGTCGAGGCTGCGGTGCGCCATCTCGA
GGAAGATCCGCTGTTCGATGCGGGTATCGGCTCCTGTCTCACTGAGACCG
GTACCGTCGAGATGGATGCCGCCGTCATGTACGATGCACCGTCGGGTCTC
CGCTCCGGCGCTGTAGCATGTGTGTCAAATTCTGTACACCCTATTAGCGT
GGCGAGGGGAGTGATGGAGCAGACTCAGCATTGTCTGCTGGTCGGCCGTG
GAGCCGATGCGTTCTCAAATCATATGGGACTCGGAGGTGCCTCGAGCGAT
CAGTTGGTGTCTTCGGAGGCTATGAAAGAGTGGCGGAACTTGCGTCGCTT
TGGTAATGCTGTGCAGACGCTGTTTAACGGTCATGATACCGTTGGCGCTG
TCGCGATGGACGTGCATGGCAATTTTGCCAGCGCTACTAGTACTGGTGGT
ATCACTGGCAAAAAGTTGGGACGAGTGGGAGATTCACCTATCTTTGGCAG
CGGATTGTTCTGTGACAGAAATGTGGGCGCTTGTAGTACCACCGGCCATG
GTGAGAGCATCATGCAAGTTTGTCTGGCAAGAAATGCGCTGGCTTTGGTG
GAATGGAGAAATCTCAGTGGAGAACAAGCCTGCAAAAACGCGTTGCAGAA
GATGGAAGAAAAGACTGGTGGTTGCGGCGGCATCATTATGGTGGATGCAA
AGGGCAATGTTTCACATTCTTGTACCACAAAACGCATGGCATGGGCTTCC
ATCAACAAGAGTGGCTCTCTTATGAGTGGAATCGATGCGTCGACGTGA
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protein sequence of Ggra3989.t1

>Ggra3989.t1 ID=Ggra3989.t1|Name=Ggra3989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MTNLPAHSRSHHRTPVIIVHGGAWAIPDATADATEASVRRAASIGHALLT
QSRSALDAVEAAVRHLEEDPLFDAGIGSCLTETGTVEMDAAVMYDAPSGL
RSGAVACVSNSVHPISVARGVMEQTQHCLLVGRGADAFSNHMGLGGASSD
QLVSSEAMKEWRNLRRFGNAVQTLFNGHDTVGAVAMDVHGNFASATSTGG
ITGKKLGRVGDSPIFGSGLFCDRNVGACSTTGHGESIMQVCLARNALALV
EWRNLSGEQACKNALQKMEEKTGGCGGIIMVDAKGNVSHSCTTKRMAWAS
INKSGSLMSGIDAST*
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mRNA from alignment at tig00000908_pilon:296008..296955-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3989.t1 ID=Ggra3989.t1|Name=Ggra3989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000908_pilon:296008..296955- (Gracilaria gracilis GNS1m male)
ATGACCAACCTTCCTGCTCATTCCCGGTCGCACCATCGCACCCCAGTCAT
CATTGTCCATGGTGGCGCATGGGCTATTCCGGACGCAACAGCCGACGCCA
CAGAAGCATCAGTCCGTCGTGCCGCCTCCATCGGCCATGCCTTACTGACG
CAATCGCGTTCCGCGTTAGATGCCGTCGAGGCTGCGGTGCGCCATCTCGA
GGAAGATCCGCTGTTCGATGCGGGTATCGGCTCCTGTCTCACTGAGACCG
GTACCGTCGAGATGGATGCCGCCGTCATGTACGATGCACCGTCGGGTCTC
CGCTCCGGCGCTGTAGCATGTGTGTCAAATTCTGTACACCCTATTAGCGT
GGCGAGGGGAGTGATGGAGCAGACTCAGCATTGTCTGCTGGTCGGCCGTG
GAGCCGATGCGTTCTCAAATCATATGGGACTCGGAGGTGCCTCGAGCGAT
CAGTTGGTGTCTTCGGAGGCTATGAAAGAGTGGCGGAACTTGCGTCGCTT
TGGTAATGCTGTGCAGACGCTGTTTAACGGTCATGATACCGTTGGCGCTG
TCGCGATGGACGTGCATGGCAATTTTGCCAGCGCTACTAGTACTGGTGGT
ATCACTGGCAAAAAGTTGGGACGAGTGGGAGATTCACCTATCTTTGGCAG
CGGATTGTTCTGTGACAGAAATGTGGGCGCTTGTAGTACCACCGGCCATG
GTGAGAGCATCATGCAAGTTTGTCTGGCAAGAAATGCGCTGGCTTTGGTG
GAATGGAGAAATCTCAGTGGAGAACAAGCCTGCAAAAACGCGTTGCAGAA
GATGGAAGAAAAGACTGGTGGTTGCGGCGGCATCATTATGGTGGATGCAA
AGGGCAATGTTTCACATTCTTGTACCACAAAACGCATGGCATGGGCTTCC
ATCAACAAGAGTGGCTCTCTTATGAGTGGAATCGATGCGTCGACGTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:296008..296955-

>Ggra3989.t1 ID=Ggra3989.t1|Name=Ggra3989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000908_pilon:296008..296955- (Gracilaria gracilis GNS1m male)
ATGACCAACCTTCCTGCTCATTCCCGGTCGCACCATCGCACCCCAGTCAT
CATTGTCCATGGTGGCGCATGGGCTATTCCGGACGCAACAGCCGACGCCA
CAGAAGCATCAGTCCGTCGTGCCGCCTCCATCGGCCATGCCTTACTGACG
CAATCGCGTTCCGCGTTAGATGCCGTCGAGGCTGCGGTGCGCCATCTCGA
GGAAGATCCGCTGTTCGATGCGGGTATCGGCTCCTGTCTCACTGAGACCG
GTACCGTCGAGATGGATGCCGCCGTCATGTACGATGCACCGTCGGGTCTC
CGCTCCGGCGCTGTAGCATGTGTGTCAAATTCTGTACACCCTATTAGCGT
GGCGAGGGGAGTGATGGAGCAGACTCAGCATTGTCTGCTGGTCGGCCGTG
GAGCCGATGCGTTCTCAAATCATATGGGACTCGGAGGTGCCTCGAGCGAT
CAGTTGGTGTCTTCGGAGGCTATGAAAGAGTGGCGGAACTTGCGTCGCTT
TGGTAATGCTGTGCAGACGCTGTTTAACGGTCATGATACCGTTGGCGCTG
TCGCGATGGACGTGCATGGCAATTTTGCCAGCGCTACTAGTACTGGTGGT
ATCACTGGCAAAAAGTTGGGACGAGTGGGAGATTCACCTATCTTTGGCAG
CGGATTGTTCTGTGACAGAAATGTGGGCGCTTGTAGTACCACCGGCCATG
GTGAGAGCATCATGCAAGTTTGTCTGGCAAGAAATGCGCTGGCTTTGGTG
GAATGGAGAAATCTCAGTGGAGAACAAGCCTGCAAAAACGCGTTGCAGAA
GATGGAAGAAAAGACTGGTGGTTGCGGCGGCATCATTATGGTGGATGCAA
AGGGCAATGTTTCACATTCTTGTACCACAAAACGCATGGCATGGGCTTCC
ATCAACAAGAGTGGCTCTCTTATGAGTGGAATCGATGCGTCGACGTGA
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