Ggra3982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3982.t1
Unique NameGgra3982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:279482..280531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706985.1
PFAMsAcyltransf_C,Acyltransferase
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K13513,ko:K13523,ko:K19007
KEGG ReactionR02241,R09034,R09036,R09037,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,map00561,map00564,map01100,map01110,map04072
KEGG ModuleM00089
Evalue7.64e-67
EggNOG OGsCOG0204@1|root,KOG1505@2759|Eukaryota
EC2.3.1.51
Description1-acylglycerol-3-phosphate O-acyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3982Ggra3982Gracilaria gracilis GNS1m malegenetig00000908_pilon 279482..280531 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3982.t1.start1Ggra3982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 279482..279484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3982.t1.CDS1Ggra3982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 279482..280531 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3982.t1.exon1Ggra3982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 279482..280531 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3982.t1.stop1Ggra3982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 280529..280531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3982.t1Ggra3982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 279482..280531 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3982.t1 ID=Ggra3982.t1|Name=Ggra3982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MSLADGALFQAIGSLYTAFFSVLISVVTVILVNGVIGLTVTALRILKLNH
RAMIHISTSVIRTWFSIFMGHLEIFGRLTIVATGDDFRPNESALVVCNHR
SWADTVVIYSLARQVRMHGDVKFLAKRSLLVFPVYGFAGWVLDVVIFIKR
QSTSAGHRLNRMFSSLTDPRRRHVPFWLINYLEGTRFTTAKREEAVQFAR
TRDLKVLDEVLQPRTKGFVSTVRALRTDAQAVYDVTIGYSQLDSGRMNPT
FQQMYGTPSRKDRVIHVHQRRIPMSELPQDDEELKQWVYRLYEQKDELLK
GFRANGKFAGRPMRWNRMTWSYWLWCQAVVYGAFGLTLYTLYILFYPAR*
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spliced messenger RNA

>Ggra3982.t1 ID=Ggra3982.t1|Name=Ggra3982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000908_pilon:279482..280531+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTGCTGACGGAGCCTTGTTTCAAGCAATAGGCTCTCTCTACAC
AGCCTTCTTCTCCGTCCTCATCTCCGTCGTTACCGTCATTCTTGTCAATG
GCGTCATTGGCCTTACCGTCACTGCGCTGCGCATTCTCAAGCTCAACCAT
CGTGCTATGATTCATATCTCTACCTCTGTCATTCGCACCTGGTTTTCCAT
CTTTATGGGCCATCTAGAGATCTTTGGACGCCTCACTATCGTCGCTACTG
GCGATGACTTCCGCCCAAATGAATCTGCCCTCGTCGTCTGCAACCATCGC
TCTTGGGCTGACACCGTCGTAATCTATTCCCTCGCGCGTCAGGTTCGCAT
GCATGGCGACGTCAAGTTTCTAGCCAAGCGATCCTTGTTAGTATTTCCAG
TGTATGGTTTTGCGGGCTGGGTTCTGGACGTAGTCATCTTTATAAAGCGT
CAATCAACAAGTGCAGGTCATCGTCTCAACAGAATGTTCTCCAGTCTCAC
CGACCCCCGCCGACGGCACGTGCCCTTCTGGCTTATCAACTACCTGGAGG
GCACACGATTCACCACGGCCAAGCGTGAAGAAGCGGTACAATTCGCCAGA
ACCAGAGATCTCAAGGTTCTGGACGAGGTGTTGCAGCCCCGAACCAAGGG
TTTCGTCTCAACCGTACGAGCCTTGCGCACAGATGCCCAAGCCGTGTACG
ACGTAACTATCGGCTATTCACAGCTTGACAGCGGACGAATGAATCCCACC
TTTCAACAAATGTACGGCACGCCGTCGCGGAAGGACCGCGTCATTCATGT
TCACCAGCGTCGTATACCCATGTCAGAGCTGCCGCAAGACGATGAGGAAC
TCAAGCAATGGGTATACCGCTTATACGAACAAAAGGATGAACTGCTCAAA
GGTTTTCGTGCAAACGGCAAGTTCGCCGGTCGTCCAATGCGCTGGAACAG
AATGACATGGAGCTATTGGCTATGGTGTCAAGCAGTTGTCTACGGAGCCT
TCGGACTCACGTTGTACACTCTGTACATCCTGTTCTACCCTGCTCGTTAG
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protein sequence of Ggra3982.t1

>Ggra3982.t1 ID=Ggra3982.t1|Name=Ggra3982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MSLADGALFQAIGSLYTAFFSVLISVVTVILVNGVIGLTVTALRILKLNH
RAMIHISTSVIRTWFSIFMGHLEIFGRLTIVATGDDFRPNESALVVCNHR
SWADTVVIYSLARQVRMHGDVKFLAKRSLLVFPVYGFAGWVLDVVIFIKR
QSTSAGHRLNRMFSSLTDPRRRHVPFWLINYLEGTRFTTAKREEAVQFAR
TRDLKVLDEVLQPRTKGFVSTVRALRTDAQAVYDVTIGYSQLDSGRMNPT
FQQMYGTPSRKDRVIHVHQRRIPMSELPQDDEELKQWVYRLYEQKDELLK
GFRANGKFAGRPMRWNRMTWSYWLWCQAVVYGAFGLTLYTLYILFYPAR*
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mRNA from alignment at tig00000908_pilon:279482..280531+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3982.t1 ID=Ggra3982.t1|Name=Ggra3982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000908_pilon:279482..280531+ (Gracilaria gracilis GNS1m male)
ATGTCGCTTGCTGACGGAGCCTTGTTTCAAGCAATAGGCTCTCTCTACAC
AGCCTTCTTCTCCGTCCTCATCTCCGTCGTTACCGTCATTCTTGTCAATG
GCGTCATTGGCCTTACCGTCACTGCGCTGCGCATTCTCAAGCTCAACCAT
CGTGCTATGATTCATATCTCTACCTCTGTCATTCGCACCTGGTTTTCCAT
CTTTATGGGCCATCTAGAGATCTTTGGACGCCTCACTATCGTCGCTACTG
GCGATGACTTCCGCCCAAATGAATCTGCCCTCGTCGTCTGCAACCATCGC
TCTTGGGCTGACACCGTCGTAATCTATTCCCTCGCGCGTCAGGTTCGCAT
GCATGGCGACGTCAAGTTTCTAGCCAAGCGATCCTTGTTAGTATTTCCAG
TGTATGGTTTTGCGGGCTGGGTTCTGGACGTAGTCATCTTTATAAAGCGT
CAATCAACAAGTGCAGGTCATCGTCTCAACAGAATGTTCTCCAGTCTCAC
CGACCCCCGCCGACGGCACGTGCCCTTCTGGCTTATCAACTACCTGGAGG
GCACACGATTCACCACGGCCAAGCGTGAAGAAGCGGTACAATTCGCCAGA
ACCAGAGATCTCAAGGTTCTGGACGAGGTGTTGCAGCCCCGAACCAAGGG
TTTCGTCTCAACCGTACGAGCCTTGCGCACAGATGCCCAAGCCGTGTACG
ACGTAACTATCGGCTATTCACAGCTTGACAGCGGACGAATGAATCCCACC
TTTCAACAAATGTACGGCACGCCGTCGCGGAAGGACCGCGTCATTCATGT
TCACCAGCGTCGTATACCCATGTCAGAGCTGCCGCAAGACGATGAGGAAC
TCAAGCAATGGGTATACCGCTTATACGAACAAAAGGATGAACTGCTCAAA
GGTTTTCGTGCAAACGGCAAGTTCGCCGGTCGTCCAATGCGCTGGAACAG
AATGACATGGAGCTATTGGCTATGGTGTCAAGCAGTTGTCTACGGAGCCT
TCGGACTCACGTTGTACACTCTGTACATCCTGTTCTACCCTGCTCGTTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:279482..280531+

>Ggra3982.t1 ID=Ggra3982.t1|Name=Ggra3982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000908_pilon:279482..280531+ (Gracilaria gracilis GNS1m male)
ATGTCGCTTGCTGACGGAGCCTTGTTTCAAGCAATAGGCTCTCTCTACAC
AGCCTTCTTCTCCGTCCTCATCTCCGTCGTTACCGTCATTCTTGTCAATG
GCGTCATTGGCCTTACCGTCACTGCGCTGCGCATTCTCAAGCTCAACCAT
CGTGCTATGATTCATATCTCTACCTCTGTCATTCGCACCTGGTTTTCCAT
CTTTATGGGCCATCTAGAGATCTTTGGACGCCTCACTATCGTCGCTACTG
GCGATGACTTCCGCCCAAATGAATCTGCCCTCGTCGTCTGCAACCATCGC
TCTTGGGCTGACACCGTCGTAATCTATTCCCTCGCGCGTCAGGTTCGCAT
GCATGGCGACGTCAAGTTTCTAGCCAAGCGATCCTTGTTAGTATTTCCAG
TGTATGGTTTTGCGGGCTGGGTTCTGGACGTAGTCATCTTTATAAAGCGT
CAATCAACAAGTGCAGGTCATCGTCTCAACAGAATGTTCTCCAGTCTCAC
CGACCCCCGCCGACGGCACGTGCCCTTCTGGCTTATCAACTACCTGGAGG
GCACACGATTCACCACGGCCAAGCGTGAAGAAGCGGTACAATTCGCCAGA
ACCAGAGATCTCAAGGTTCTGGACGAGGTGTTGCAGCCCCGAACCAAGGG
TTTCGTCTCAACCGTACGAGCCTTGCGCACAGATGCCCAAGCCGTGTACG
ACGTAACTATCGGCTATTCACAGCTTGACAGCGGACGAATGAATCCCACC
TTTCAACAAATGTACGGCACGCCGTCGCGGAAGGACCGCGTCATTCATGT
TCACCAGCGTCGTATACCCATGTCAGAGCTGCCGCAAGACGATGAGGAAC
TCAAGCAATGGGTATACCGCTTATACGAACAAAAGGATGAACTGCTCAAA
GGTTTTCGTGCAAACGGCAAGTTCGCCGGTCGTCCAATGCGCTGGAACAG
AATGACATGGAGCTATTGGCTATGGTGTCAAGCAGTTGTCTACGGAGCCT
TCGGACTCACGTTGTACACTCTGTACATCCTGTTCTACCCTGCTCGTTAG
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