Ggra3979.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3979.t2
Unique Name	Ggra3979.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	708

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:273191..275314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123277.KB893172_gene797
Preferred name	yfmR
PFAMs	ABC_tran,ABC_tran_CTD,ABC_tran_Xtn
Max annot lvl	976\|Bacteroidetes
KEGG ko	ko:K15738
KEGG TC	3.A.1.120.6
Evalue	1.09e-117
EggNOG OGs	COG0488@1\|root,COG0488@2\|Bacteria,4NES5@976\|Bacteroidetes,47JCA@768503\|Cytophagia
Description	ABC transporter
COG category	S
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3979	Ggra3979	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 273191..275314 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3979.t2.start1	Ggra3979.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 273191..273193 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3979.t2.CDS1	Ggra3979.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 273191..275314 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3979.t2.exon1	Ggra3979.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 273191..275314 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3979.t2.stop1	Ggra3979.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 275312..275314 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3979.t2	Ggra3979.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 273191..275314 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:273191..275314+
coding sequence from alignment at tig00000908_pilon:273191..275314+

mRNA sequence

>Ggra3979.t2 ID=Ggra3979.t2|Name=Ggra3979.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp
MQAERILWATNLSKSHDGRTKQFTNLSVDIPAGAKLALLGRSGVGKSTLL
SILAGVTQPDEGSVTLRRGASIAYVSQDLPQVQAENALHAVMMLASRCTN
NDAVRAALRYASIAAKVQKGLDDNSLQLLADAAAHMDQTSGAWEMDSYMN
AALSRLQVPLDVPLSKLSGGQKRRIAIAAALVAKPDVLLLDEVTNHLSID
AVEFVEEVLADPLITVLAISHDRWFVDRVCSSGIWELEGELAKYGAGYDS
FLEQKSSSLQREEKLVSDLSKAYKKELEWMRRQPKARGSKSKARVADVLE
MQEQLKVRKNRLAVAAVKDLRTTTSRLGSEVVRVENVTLKRGEKLILEDF
SYTFERGERMGIVGGNGVGKSSFIQLLLGRIAPHSGAIHVGETVNFGHFD
QEGDDIFERLSEATKLALKGGDWTQVRTVDYVKELLAEYGSGEEAANARR
SSRTAVRAEDAEQRLANEIEQLSYSVTVRTSKRTERNPNPLVHMQPTALL
EHFGFGREKHFNFVSSLSGGEKRRLQLIALLLRNANFMLLDEVSNDLDLN
TLTMLEELLAEYSGVLVICSHDRFMLDRLVDHLLVFEGDGQVTLVEGKFT
DYLEAKRQLEQDEKKLRKKSAGEGARQQRKKEQARRLSYKERREYDSLED
EIDRLNERHAQLSELVCSNAGADYEKLTAWSEELAAIADSIDHKTERWLM
LAEIAGD*

spliced messenger RNA

>Ggra3979.t2 ID=Ggra3979.t2|Name=Ggra3979.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00000908_pilon:273191..275314+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCGGAGCGCATTCTATGGGCAACAAATCTTAGCAAATCACATGA
TGGTCGAACCAAACAATTTACAAATCTCTCCGTCGACATTCCCGCCGGTG
CAAAATTGGCACTTTTAGGCCGAAGTGGCGTAGGAAAATCAACGTTGTTG
TCGATATTAGCCGGCGTAACGCAGCCGGATGAAGGGAGCGTAACGCTTCG
TCGCGGTGCTAGTATAGCGTATGTGAGTCAGGATTTGCCTCAAGTGCAGG
CTGAAAACGCGCTTCATGCGGTTATGATGCTTGCTTCACGCTGCACGAAC
AACGATGCCGTTCGAGCTGCGTTGCGGTACGCTTCGATTGCTGCCAAGGT
GCAGAAAGGGTTGGATGATAATTCGTTGCAATTGTTGGCTGATGCTGCGG
CGCATATGGATCAGACCTCTGGCGCATGGGAGATGGACAGTTATATGAAC
GCGGCGCTTTCCAGATTACAAGTTCCTCTTGACGTTCCTCTTTCGAAGTT
GTCTGGCGGACAGAAACGGCGAATTGCGATTGCTGCTGCTTTAGTTGCGA
AGCCGGATGTTTTGCTGTTGGATGAGGTTACCAATCACCTTTCGATTGAC
GCTGTTGAGTTTGTGGAAGAGGTCTTGGCAGACCCGCTTATCACCGTGCT
CGCCATTTCGCACGACAGATGGTTTGTGGATCGAGTCTGTTCTTCTGGTA
TTTGGGAATTGGAAGGGGAGCTTGCCAAATATGGCGCAGGCTATGATTCT
TTCCTAGAACAAAAGTCTAGTTCTTTGCAGCGTGAGGAGAAGTTGGTGTC
TGACTTGTCGAAGGCGTACAAAAAGGAGCTGGAGTGGATGAGAAGACAGC
CCAAAGCCAGAGGATCAAAATCAAAGGCGCGAGTCGCAGACGTGTTGGAA
ATGCAAGAGCAGTTAAAAGTGCGAAAGAATCGGCTGGCAGTAGCAGCCGT
GAAGGACTTGCGAACGACCACCTCCAGGTTGGGGTCAGAGGTTGTACGAG
TTGAAAACGTGACACTGAAGCGTGGTGAGAAGCTGATATTGGAAGACTTC
AGCTACACGTTTGAACGCGGGGAACGCATGGGAATTGTAGGCGGCAATGG
AGTGGGAAAGAGTTCGTTCATTCAGTTACTGTTGGGAAGGATTGCACCGC
ATAGTGGAGCGATTCATGTGGGAGAAACGGTAAACTTTGGGCACTTTGAT
CAGGAGGGTGATGACATTTTTGAGCGGCTATCAGAAGCTACGAAACTGGC
GTTGAAGGGCGGGGACTGGACACAGGTGCGCACGGTGGACTATGTGAAGG
AGCTACTTGCCGAGTACGGCAGCGGTGAAGAGGCAGCAAACGCGCGAAGG
TCCAGCCGAACGGCAGTGCGAGCAGAGGATGCGGAACAGAGGCTGGCGAA
CGAGATCGAGCAACTGAGCTACAGTGTGACGGTGCGAACGTCGAAACGAA
CGGAGCGTAACCCGAATCCGCTTGTGCACATGCAACCGACGGCGCTGTTG
GAACATTTTGGGTTTGGGCGAGAGAAACACTTCAACTTTGTGTCGTCGCT
GTCGGGTGGGGAGAAACGTCGACTGCAGTTGATTGCGCTTCTGCTGCGCA
ACGCAAACTTCATGCTTCTGGATGAGGTGTCGAACGACCTGGATCTGAAC
ACGTTGACGATGCTGGAGGAGCTGCTGGCGGAGTACAGCGGCGTGTTGGT
AATCTGCTCGCATGACCGATTCATGTTGGACAGACTGGTAGACCATCTGC
TGGTATTCGAGGGCGACGGGCAAGTGACGCTGGTAGAAGGCAAGTTCACC
GACTACCTGGAAGCAAAGCGGCAGCTGGAGCAGGACGAAAAGAAGCTGCG
GAAGAAAAGCGCGGGTGAAGGAGCCAGGCAGCAGCGGAAGAAGGAGCAAG
CACGGCGGCTGAGCTACAAGGAACGGCGCGAATACGACAGTTTAGAAGAT
GAAATTGACAGACTGAACGAGCGACACGCGCAGCTCAGTGAGCTGGTGTG
CTCCAACGCCGGCGCCGACTACGAGAAGCTCACGGCGTGGAGCGAGGAAC
TGGCCGCCATCGCCGACAGCATCGACCACAAGACCGAGCGCTGGCTCATG
TTGGCGGAGATTGCCGGCGACTGA

protein sequence of Ggra3979.t2

>Ggra3979.t2 ID=Ggra3979.t2|Name=Ggra3979.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=708bp
MQAERILWATNLSKSHDGRTKQFTNLSVDIPAGAKLALLGRSGVGKSTLL
SILAGVTQPDEGSVTLRRGASIAYVSQDLPQVQAENALHAVMMLASRCTN
NDAVRAALRYASIAAKVQKGLDDNSLQLLADAAAHMDQTSGAWEMDSYMN
AALSRLQVPLDVPLSKLSGGQKRRIAIAAALVAKPDVLLLDEVTNHLSID
AVEFVEEVLADPLITVLAISHDRWFVDRVCSSGIWELEGELAKYGAGYDS
FLEQKSSSLQREEKLVSDLSKAYKKELEWMRRQPKARGSKSKARVADVLE
MQEQLKVRKNRLAVAAVKDLRTTTSRLGSEVVRVENVTLKRGEKLILEDF
SYTFERGERMGIVGGNGVGKSSFIQLLLGRIAPHSGAIHVGETVNFGHFD
QEGDDIFERLSEATKLALKGGDWTQVRTVDYVKELLAEYGSGEEAANARR
SSRTAVRAEDAEQRLANEIEQLSYSVTVRTSKRTERNPNPLVHMQPTALL
EHFGFGREKHFNFVSSLSGGEKRRLQLIALLLRNANFMLLDEVSNDLDLN
TLTMLEELLAEYSGVLVICSHDRFMLDRLVDHLLVFEGDGQVTLVEGKFT
DYLEAKRQLEQDEKKLRKKSAGEGARQQRKKEQARRLSYKERREYDSLED
EIDRLNERHAQLSELVCSNAGADYEKLTAWSEELAAIADSIDHKTERWLM
LAEIAGD*

mRNA from alignment at tig00000908_pilon:273191..275314+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3979.t2 ID=Ggra3979.t2|Name=Ggra3979.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00000908_pilon:273191..275314+ (Gracilaria gracilis GNS1m male)
ATGCAAGCGGAGCGCATTCTATGGGCAACAAATCTTAGCAAATCACATGA
TGGTCGAACCAAACAATTTACAAATCTCTCCGTCGACATTCCCGCCGGTG
CAAAATTGGCACTTTTAGGCCGAAGTGGCGTAGGAAAATCAACGTTGTTG
TCGATATTAGCCGGCGTAACGCAGCCGGATGAAGGGAGCGTAACGCTTCG
TCGCGGTGCTAGTATAGCGTATGTGAGTCAGGATTTGCCTCAAGTGCAGG
CTGAAAACGCGCTTCATGCGGTTATGATGCTTGCTTCACGCTGCACGAAC
AACGATGCCGTTCGAGCTGCGTTGCGGTACGCTTCGATTGCTGCCAAGGT
GCAGAAAGGGTTGGATGATAATTCGTTGCAATTGTTGGCTGATGCTGCGG
CGCATATGGATCAGACCTCTGGCGCATGGGAGATGGACAGTTATATGAAC
GCGGCGCTTTCCAGATTACAAGTTCCTCTTGACGTTCCTCTTTCGAAGTT
GTCTGGCGGACAGAAACGGCGAATTGCGATTGCTGCTGCTTTAGTTGCGA
AGCCGGATGTTTTGCTGTTGGATGAGGTTACCAATCACCTTTCGATTGAC
GCTGTTGAGTTTGTGGAAGAGGTCTTGGCAGACCCGCTTATCACCGTGCT
CGCCATTTCGCACGACAGATGGTTTGTGGATCGAGTCTGTTCTTCTGGTA
TTTGGGAATTGGAAGGGGAGCTTGCCAAATATGGCGCAGGCTATGATTCT
TTCCTAGAACAAAAGTCTAGTTCTTTGCAGCGTGAGGAGAAGTTGGTGTC
TGACTTGTCGAAGGCGTACAAAAAGGAGCTGGAGTGGATGAGAAGACAGC
CCAAAGCCAGAGGATCAAAATCAAAGGCGCGAGTCGCAGACGTGTTGGAA
ATGCAAGAGCAGTTAAAAGTGCGAAAGAATCGGCTGGCAGTAGCAGCCGT
GAAGGACTTGCGAACGACCACCTCCAGGTTGGGGTCAGAGGTTGTACGAG
TTGAAAACGTGACACTGAAGCGTGGTGAGAAGCTGATATTGGAAGACTTC
AGCTACACGTTTGAACGCGGGGAACGCATGGGAATTGTAGGCGGCAATGG
AGTGGGAAAGAGTTCGTTCATTCAGTTACTGTTGGGAAGGATTGCACCGC
ATAGTGGAGCGATTCATGTGGGAGAAACGGTAAACTTTGGGCACTTTGAT
CAGGAGGGTGATGACATTTTTGAGCGGCTATCAGAAGCTACGAAACTGGC
GTTGAAGGGCGGGGACTGGACACAGGTGCGCACGGTGGACTATGTGAAGG
AGCTACTTGCCGAGTACGGCAGCGGTGAAGAGGCAGCAAACGCGCGAAGG
TCCAGCCGAACGGCAGTGCGAGCAGAGGATGCGGAACAGAGGCTGGCGAA
CGAGATCGAGCAACTGAGCTACAGTGTGACGGTGCGAACGTCGAAACGAA
CGGAGCGTAACCCGAATCCGCTTGTGCACATGCAACCGACGGCGCTGTTG
GAACATTTTGGGTTTGGGCGAGAGAAACACTTCAACTTTGTGTCGTCGCT
GTCGGGTGGGGAGAAACGTCGACTGCAGTTGATTGCGCTTCTGCTGCGCA
ACGCAAACTTCATGCTTCTGGATGAGGTGTCGAACGACCTGGATCTGAAC
ACGTTGACGATGCTGGAGGAGCTGCTGGCGGAGTACAGCGGCGTGTTGGT
AATCTGCTCGCATGACCGATTCATGTTGGACAGACTGGTAGACCATCTGC
TGGTATTCGAGGGCGACGGGCAAGTGACGCTGGTAGAAGGCAAGTTCACC
GACTACCTGGAAGCAAAGCGGCAGCTGGAGCAGGACGAAAAGAAGCTGCG
GAAGAAAAGCGCGGGTGAAGGAGCCAGGCAGCAGCGGAAGAAGGAGCAAG
CACGGCGGCTGAGCTACAAGGAACGGCGCGAATACGACAGTTTAGAAGAT
GAAATTGACAGACTGAACGAGCGACACGCGCAGCTCAGTGAGCTGGTGTG
CTCCAACGCCGGCGCCGACTACGAGAAGCTCACGGCGTGGAGCGAGGAAC
TGGCCGCCATCGCCGACAGCATCGACCACAAGACCGAGCGCTGGCTCATG
TTGGCGGAGATTGCCGGCGACTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:273191..275314+

>Ggra3979.t2 ID=Ggra3979.t2|Name=Ggra3979.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00000908_pilon:273191..275314+ (Gracilaria gracilis GNS1m male)
ATGCAAGCGGAGCGCATTCTATGGGCAACAAATCTTAGCAAATCACATGA
TGGTCGAACCAAACAATTTACAAATCTCTCCGTCGACATTCCCGCCGGTG
CAAAATTGGCACTTTTAGGCCGAAGTGGCGTAGGAAAATCAACGTTGTTG
TCGATATTAGCCGGCGTAACGCAGCCGGATGAAGGGAGCGTAACGCTTCG
TCGCGGTGCTAGTATAGCGTATGTGAGTCAGGATTTGCCTCAAGTGCAGG
CTGAAAACGCGCTTCATGCGGTTATGATGCTTGCTTCACGCTGCACGAAC
AACGATGCCGTTCGAGCTGCGTTGCGGTACGCTTCGATTGCTGCCAAGGT
GCAGAAAGGGTTGGATGATAATTCGTTGCAATTGTTGGCTGATGCTGCGG
CGCATATGGATCAGACCTCTGGCGCATGGGAGATGGACAGTTATATGAAC
GCGGCGCTTTCCAGATTACAAGTTCCTCTTGACGTTCCTCTTTCGAAGTT
GTCTGGCGGACAGAAACGGCGAATTGCGATTGCTGCTGCTTTAGTTGCGA
AGCCGGATGTTTTGCTGTTGGATGAGGTTACCAATCACCTTTCGATTGAC
GCTGTTGAGTTTGTGGAAGAGGTCTTGGCAGACCCGCTTATCACCGTGCT
CGCCATTTCGCACGACAGATGGTTTGTGGATCGAGTCTGTTCTTCTGGTA
TTTGGGAATTGGAAGGGGAGCTTGCCAAATATGGCGCAGGCTATGATTCT
TTCCTAGAACAAAAGTCTAGTTCTTTGCAGCGTGAGGAGAAGTTGGTGTC
TGACTTGTCGAAGGCGTACAAAAAGGAGCTGGAGTGGATGAGAAGACAGC
CCAAAGCCAGAGGATCAAAATCAAAGGCGCGAGTCGCAGACGTGTTGGAA
ATGCAAGAGCAGTTAAAAGTGCGAAAGAATCGGCTGGCAGTAGCAGCCGT
GAAGGACTTGCGAACGACCACCTCCAGGTTGGGGTCAGAGGTTGTACGAG
TTGAAAACGTGACACTGAAGCGTGGTGAGAAGCTGATATTGGAAGACTTC
AGCTACACGTTTGAACGCGGGGAACGCATGGGAATTGTAGGCGGCAATGG
AGTGGGAAAGAGTTCGTTCATTCAGTTACTGTTGGGAAGGATTGCACCGC
ATAGTGGAGCGATTCATGTGGGAGAAACGGTAAACTTTGGGCACTTTGAT
CAGGAGGGTGATGACATTTTTGAGCGGCTATCAGAAGCTACGAAACTGGC
GTTGAAGGGCGGGGACTGGACACAGGTGCGCACGGTGGACTATGTGAAGG
AGCTACTTGCCGAGTACGGCAGCGGTGAAGAGGCAGCAAACGCGCGAAGG
TCCAGCCGAACGGCAGTGCGAGCAGAGGATGCGGAACAGAGGCTGGCGAA
CGAGATCGAGCAACTGAGCTACAGTGTGACGGTGCGAACGTCGAAACGAA
CGGAGCGTAACCCGAATCCGCTTGTGCACATGCAACCGACGGCGCTGTTG
GAACATTTTGGGTTTGGGCGAGAGAAACACTTCAACTTTGTGTCGTCGCT
GTCGGGTGGGGAGAAACGTCGACTGCAGTTGATTGCGCTTCTGCTGCGCA
ACGCAAACTTCATGCTTCTGGATGAGGTGTCGAACGACCTGGATCTGAAC
ACGTTGACGATGCTGGAGGAGCTGCTGGCGGAGTACAGCGGCGTGTTGGT
AATCTGCTCGCATGACCGATTCATGTTGGACAGACTGGTAGACCATCTGC
TGGTATTCGAGGGCGACGGGCAAGTGACGCTGGTAGAAGGCAAGTTCACC
GACTACCTGGAAGCAAAGCGGCAGCTGGAGCAGGACGAAAAGAAGCTGCG
GAAGAAAAGCGCGGGTGAAGGAGCCAGGCAGCAGCGGAAGAAGGAGCAAG
CACGGCGGCTGAGCTACAAGGAACGGCGCGAATACGACAGTTTAGAAGAT
GAAATTGACAGACTGAACGAGCGACACGCGCAGCTCAGTGAGCTGGTGTG
CTCCAACGCCGGCGCCGACTACGAGAAGCTCACGGCGTGGAGCGAGGAAC
TGGCCGCCATCGCCGACAGCATCGACCACAAGACCGAGCGCTGGCTCATG
TTGGCGGAGATTGCCGGCGACTGA