Ggra3978.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3978.t1
Unique NameGgra3978.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length98
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:272260..272620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3978Ggra3978Gracilaria gracilis GNS1m malegenetig00000908_pilon 272260..272620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1Ggra3978.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 272260..272620 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1.stop1Ggra3978.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 272260..272262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1.CDS1Ggra3978.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 272260..272381 -
Ggra3978.t1.CDS2Ggra3978.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 272449..272620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1.exon1Ggra3978.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 272260..272381 -
Ggra3978.t1.exon2Ggra3978.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 272449..272620 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1.intron1Ggra3978.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 272382..272448 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3978.t1.start1Ggra3978.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 272618..272620 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3978.t1 ID=Ggra3978.t1|Name=Ggra3978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=98bp
MVRDYDVVAALESEFKRRRSVFTLVDLANELVSENEIETEAHERGVSLLK
RAVKQYKTSMSYGKRFARVEGRRLMLSTILAFDLFTVTSEKRKNNAD*
back to top

spliced messenger RNA

>Ggra3978.t1 ID=Ggra3978.t1|Name=Ggra3978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp|location=Sequence derived from alignment at tig00000908_pilon:272260..272620- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGAGATTATGACGTAGTCGCTGCGTTAGAATCGGAATTCAAGCG
CAGGCGTTCCGTATTCACCCTCGTGGATCTCGCTAATGAGCTAGTTTCCG
AGAATGAAATTGAAACAGAAGCTCACGAACGAGGGGTATCGCTTCTCAAA
CGCGCCGTCAAGCAGTACAAAACATCAATGAGCTATGGGAAACGCTTTGC
TCGCGTCGAAGGCCGTCGGCTAATGCTTTCTACAATCTTGGCCTTCGACT
TGTTTACGGTAACTTCGGAGAAAAGGAAGAACAACGCGGATTAG
back to top

protein sequence of Ggra3978.t1

>Ggra3978.t1 ID=Ggra3978.t1|Name=Ggra3978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=98bp
MVRDYDVVAALESEFKRRRSVFTLVDLANELVSENEIETEAHERGVSLLK
RAVKQYKTSMSYGKRFARVEGRRLMLSTILAFDLFTVTSEKRKNNAD*
back to top

mRNA from alignment at tig00000908_pilon:272260..272620-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3978.t1 ID=Ggra3978.t1|Name=Ggra3978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp|location=Sequence derived from alignment at tig00000908_pilon:272260..272620- (Gracilaria gracilis GNS1m male)
ATGGTTCGAGATTATGACGTAGTCGCTGCGTTAGAATCGGAATTCAAGCG
CAGGCGTTCCGTATTCACCCTCGTGGATCTCGCTAATGAGCTAGTTTCCG
AGAATGAAATTGAAACAGAAGCTCACGAACGAGGGGTATCGCTTCTCAAA
CGCGCCGTCAAGCAGTACAAAAGTTCGTATGCAATCACCGAACTATTAAT
GTACTACATAGAGTTTCACTCTCTAACAGAGCAAGAAAGCATCAATGAGC
TATGGGAAACGCTTTGCTCGCGTCGAAGGCCGTCGGCTAATGCTTTCTAC
AATCTTGGCCTTCGACTTGTTTACGGTAACTTCGGAGAAAAGGAAGAACA
ACGCGGATTAG
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:272260..272620-

>Ggra3978.t1 ID=Ggra3978.t1|Name=Ggra3978.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=294bp|location=Sequence derived from alignment at tig00000908_pilon:272260..272620- (Gracilaria gracilis GNS1m male)
ATGGTTCGAGATTATGACGTAGTCGCTGCGTTAGAATCGGAATTCAAGCG
CAGGCGTTCCGTATTCACCCTCGTGGATCTCGCTAATGAGCTAGTTTCCG
AGAATGAAATTGAAACAGAAGCTCACGAACGAGGGGTATCGCTTCTCAAA
CGCGCCGTCAAGCAGTACAAAACATCAATGAGCTATGGGAAACGCTTTGC
TCGCGTCGAAGGCCGTCGGCTAATGCTTTCTACAATCTTGGCCTTCGACT
TGTTTACGGTAACTTCGGAGAAAAGGAAGAACAACGCGGATTAG
back to top