Ggra3975.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3975.t1
Unique NameGgra3975.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:264294..264889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003292201.1
PFAMsPEN-2
Max annot lvl554915|Amoebozoa
KEGG koko:K06170
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0070765,GO:0071944,GO:0098796,GO:0098797
Evalue7.62e-07
EggNOG OGsKOG3402@1|root,KOG3402@2759|Eukaryota,3XHY6@554915|Amoebozoa
DescriptionPresenilin enhancer-2 subunit of gamma secretase
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3975Ggra3975Gracilaria gracilis GNS1m malegenetig00000908_pilon 264294..264889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1Ggra3975.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 264294..264889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1.stop1Ggra3975.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 264294..264296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1.CDS1Ggra3975.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 264294..264433 -
Ggra3975.t1.CDS2Ggra3975.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 264523..264889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1.exon1Ggra3975.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 264294..264433 -
Ggra3975.t1.exon2Ggra3975.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 264523..264889 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1.intron1Ggra3975.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 264434..264522 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3975.t1.start1Ggra3975.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 264887..264889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3975.t1 ID=Ggra3975.t1|Name=Ggra3975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MTQAPTNDPPSQAPQARGVAPWERVGATHLPPTDPSAQAKAEKWSRKNQP
NSQSREQRRKQKAIERQRRKEEEERLRTEQLENSARRMYIVGFFALPLVW
LVALIYFRKEHKDDNGNERIKQYYRGARFWFVIYTVVFVTWFIVFQVKSN
TFSTINIVNFNGTSPSGI*
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spliced messenger RNA

>Ggra3975.t1 ID=Ggra3975.t1|Name=Ggra3975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000908_pilon:264294..264889- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACAGGCGCCAACCAACGACCCGCCTTCACAAGCGCCGCAGGCCAG
GGGCGTGGCGCCTTGGGAGCGTGTTGGAGCTACTCATTTGCCTCCAACCG
ATCCCTCTGCGCAAGCGAAGGCCGAGAAATGGAGTCGCAAAAACCAACCC
AACTCCCAGAGTCGCGAGCAACGACGCAAACAGAAAGCGATTGAGCGACA
AAGGCGAAAAGAAGAGGAAGAGAGATTGCGGACCGAACAGTTGGAGAACA
GTGCTAGACGCATGTATATTGTTGGCTTTTTTGCTTTACCGCTTGTTTGG
TTGGTTGCGTTGATTTACTTTCGGAAGGAACATAAGGACGACAATGGGAA
TGAGCGTATAAAACAATATTATCGCGGCGCTCGCTTCTGGTTCGTGATAT
ACACGGTGGTATTCGTAACATGGTTCATCGTGTTCCAAGTGAAGTCCAAC
ACATTTTCAACCATAAACATCGTCAATTTCAACGGAACAAGTCCGTCAGG
AATCTAA
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protein sequence of Ggra3975.t1

>Ggra3975.t1 ID=Ggra3975.t1|Name=Ggra3975.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MTQAPTNDPPSQAPQARGVAPWERVGATHLPPTDPSAQAKAEKWSRKNQP
NSQSREQRRKQKAIERQRRKEEEERLRTEQLENSARRMYIVGFFALPLVW
LVALIYFRKEHKDDNGNERIKQYYRGARFWFVIYTVVFVTWFIVFQVKSN
TFSTINIVNFNGTSPSGI*
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mRNA from alignment at tig00000908_pilon:264294..264889-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3975.t1 ID=Ggra3975.t1|Name=Ggra3975.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp|location=Sequence derived from alignment at tig00000908_pilon:264294..264889- (Gracilaria gracilis GNS1m male)
ATGACACAGGCGCCAACCAACGACCCGCCTTCACAAGCGCCGCAGGCCAG
GGGCGTGGCGCCTTGGGAGCGTGTTGGAGCTACTCATTTGCCTCCAACCG
ATCCCTCTGCGCAAGCGAAGGCCGAGAAATGGAGTCGCAAAAACCAACCC
AACTCCCAGAGTCGCGAGCAACGACGCAAACAGAAAGCGATTGAGCGACA
AAGGCGAAAAGAAGAGGAAGAGAGATTGCGGACCGAACAGTTGGAGAACA
GTGCTAGACGCATGTATATTGTTGGCTTTTTTGCTTTACCGCTTGTTTGG
TTGGTTGCGTTGATTTACTTTCGGAAGGAACATAAGGACGACAATGGGAA
TGAGCGTATAAAACAATGTAAGTTATGTTCGCAGGAGGTTATCACTGTCA
ACGTGAACACTACGCCCCGCGTGATACTAACCGTAATATATTTGATTGAG
ACCCAGATTATCGCGGCGCTCGCTTCTGGTTCGTGATATACACGGTGGTA
TTCGTAACATGGTTCATCGTGTTCCAAGTGAAGTCCAACACATTTTCAAC
CATAAACATCGTCAATTTCAACGGAACAAGTCCGTCAGGAATCTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:264294..264889-

>Ggra3975.t1 ID=Ggra3975.t1|Name=Ggra3975.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000908_pilon:264294..264889- (Gracilaria gracilis GNS1m male)
ATGACACAGGCGCCAACCAACGACCCGCCTTCACAAGCGCCGCAGGCCAG
GGGCGTGGCGCCTTGGGAGCGTGTTGGAGCTACTCATTTGCCTCCAACCG
ATCCCTCTGCGCAAGCGAAGGCCGAGAAATGGAGTCGCAAAAACCAACCC
AACTCCCAGAGTCGCGAGCAACGACGCAAACAGAAAGCGATTGAGCGACA
AAGGCGAAAAGAAGAGGAAGAGAGATTGCGGACCGAACAGTTGGAGAACA
GTGCTAGACGCATGTATATTGTTGGCTTTTTTGCTTTACCGCTTGTTTGG
TTGGTTGCGTTGATTTACTTTCGGAAGGAACATAAGGACGACAATGGGAA
TGAGCGTATAAAACAATATTATCGCGGCGCTCGCTTCTGGTTCGTGATAT
ACACGGTGGTATTCGTAACATGGTTCATCGTGTTCCAAGTGAAGTCCAAC
ACATTTTCAACCATAAACATCGTCAATTTCAACGGAACAAGTCCGTCAGG
AATCTAA
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