Ggra3974.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3974.t1
Unique Name	Ggra3974.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:263221..264273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	756067.MicvaDRAFT_2073
PFAMs	DUF92
Max annot lvl	1117\|Cyanobacteria
GOs	GO:0005575,GO:0016020
Evalue	1.51e-70
EggNOG OGs	COG1836@1\|root,COG1836@2\|Bacteria,1G07R@1117\|Cyanobacteria,1H720@1150\|Oscillatoriales
Description	PFAM Integral membrane protein DUF92
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3974	Ggra3974	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 263221..264273 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3974.t1.start1	Ggra3974.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 263221..263223 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3974.t1.CDS1	Ggra3974.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 263221..264273 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3974.t1.exon1	Ggra3974.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 263221..264273 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3974.t1.stop1	Ggra3974.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 264271..264273 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3974.t1	Ggra3974.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 263221..264273 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:263221..264273+
coding sequence from alignment at tig00000908_pilon:263221..264273+

mRNA sequence

>Ggra3974.t1 ID=Ggra3974.t1|Name=Ggra3974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MAPRRVGGKESSLIKPKTRRAISLPTVYYLQRQQSNLASTAMHRRHYSRA
AFCITPLPPRLRRRRAQIRLQRPLPKAPPLRRVSPTSNLQVVTALKTSSI
AQALTFNSCLLVSANLLHQNVLTQTGLYHAFVLGVILWSCLSWPGFSLCF
AFLILGSGVTRIGRQKKEALGIAEKRGGARGPENLWGAAAVSAICALGVA
FVPFLSRGWGDAVREMLTSALLIGYTSSLATKFADTTSSEIGKAYGSATY
LITSLQRVPRGTEGAVSVEGTLAGIIAASLASIYALFVGLIFSPIHVIIC
VAASFIATTAESFIGATIQERFGWSNEFVNFVNTLIGAIVAMGLYVVFSL
*

spliced messenger RNA

>Ggra3974.t1 ID=Ggra3974.t1|Name=Ggra3974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000908_pilon:263221..264273+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCACGGCGCGTAGGCGGAAAAGAGAGCTCGCTCATAAAACCCAA
AACACGTCGCGCCATTTCGCTACCTACGGTGTACTACCTTCAGCGGCAAC
AGTCGAACTTGGCGTCGACCGCCATGCATCGCCGCCACTACTCGCGTGCT
GCCTTCTGCATCACGCCGCTACCACCGCGGCTACGACGACGTCGTGCCCA
AATTCGTCTTCAAAGACCGCTGCCCAAGGCGCCTCCTCTCCGGCGTGTGT
CGCCAACAAGCAATTTGCAGGTGGTTACTGCTTTGAAAACGTCTTCCATT
GCTCAAGCGCTTACTTTCAACTCGTGTTTACTGGTGAGTGCGAACCTTTT
ACACCAAAATGTGCTCACCCAAACTGGGCTGTATCACGCGTTTGTTCTCG
GCGTGATCTTGTGGTCCTGTTTGTCATGGCCTGGATTTTCTTTATGTTTC
GCATTTCTCATACTTGGGTCGGGGGTCACCCGCATTGGACGTCAGAAGAA
AGAGGCACTGGGTATTGCGGAGAAACGAGGGGGTGCACGAGGGCCAGAGA
ATCTTTGGGGCGCGGCTGCGGTGTCTGCGATCTGCGCCCTTGGCGTTGCG
TTTGTTCCCTTCCTCTCTCGGGGGTGGGGTGATGCGGTACGTGAAATGCT
CACTTCTGCGTTGTTGATTGGATACACTTCATCACTGGCCACCAAGTTTG
CCGATACCACTTCGAGCGAGATTGGAAAGGCGTATGGAAGCGCTACATAT
CTAATTACGTCGTTACAACGCGTTCCGCGCGGAACGGAGGGTGCGGTAAG
CGTTGAAGGTACTCTAGCCGGTATCATAGCTGCATCCCTGGCATCAATAT
ACGCATTGTTCGTAGGTTTGATATTCAGTCCTATACACGTGATAATTTGT
GTTGCTGCTTCATTTATTGCTACAACAGCGGAAAGCTTTATCGGTGCTAC
CATACAAGAACGATTTGGATGGTCGAATGAATTTGTTAACTTTGTGAACA
CTCTCATTGGAGCTATTGTTGCGATGGGGTTGTATGTTGTGTTTAGCTTA
TGA

protein sequence of Ggra3974.t1

>Ggra3974.t1 ID=Ggra3974.t1|Name=Ggra3974.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MAPRRVGGKESSLIKPKTRRAISLPTVYYLQRQQSNLASTAMHRRHYSRA
AFCITPLPPRLRRRRAQIRLQRPLPKAPPLRRVSPTSNLQVVTALKTSSI
AQALTFNSCLLVSANLLHQNVLTQTGLYHAFVLGVILWSCLSWPGFSLCF
AFLILGSGVTRIGRQKKEALGIAEKRGGARGPENLWGAAAVSAICALGVA
FVPFLSRGWGDAVREMLTSALLIGYTSSLATKFADTTSSEIGKAYGSATY
LITSLQRVPRGTEGAVSVEGTLAGIIAASLASIYALFVGLIFSPIHVIIC
VAASFIATTAESFIGATIQERFGWSNEFVNFVNTLIGAIVAMGLYVVFSL
*

mRNA from alignment at tig00000908_pilon:263221..264273+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3974.t1 ID=Ggra3974.t1|Name=Ggra3974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000908_pilon:263221..264273+ (Gracilaria gracilis GNS1m male)
ATGGCCCCACGGCGCGTAGGCGGAAAAGAGAGCTCGCTCATAAAACCCAA
AACACGTCGCGCCATTTCGCTACCTACGGTGTACTACCTTCAGCGGCAAC
AGTCGAACTTGGCGTCGACCGCCATGCATCGCCGCCACTACTCGCGTGCT
GCCTTCTGCATCACGCCGCTACCACCGCGGCTACGACGACGTCGTGCCCA
AATTCGTCTTCAAAGACCGCTGCCCAAGGCGCCTCCTCTCCGGCGTGTGT
CGCCAACAAGCAATTTGCAGGTGGTTACTGCTTTGAAAACGTCTTCCATT
GCTCAAGCGCTTACTTTCAACTCGTGTTTACTGGTGAGTGCGAACCTTTT
ACACCAAAATGTGCTCACCCAAACTGGGCTGTATCACGCGTTTGTTCTCG
GCGTGATCTTGTGGTCCTGTTTGTCATGGCCTGGATTTTCTTTATGTTTC
GCATTTCTCATACTTGGGTCGGGGGTCACCCGCATTGGACGTCAGAAGAA
AGAGGCACTGGGTATTGCGGAGAAACGAGGGGGTGCACGAGGGCCAGAGA
ATCTTTGGGGCGCGGCTGCGGTGTCTGCGATCTGCGCCCTTGGCGTTGCG
TTTGTTCCCTTCCTCTCTCGGGGGTGGGGTGATGCGGTACGTGAAATGCT
CACTTCTGCGTTGTTGATTGGATACACTTCATCACTGGCCACCAAGTTTG
CCGATACCACTTCGAGCGAGATTGGAAAGGCGTATGGAAGCGCTACATAT
CTAATTACGTCGTTACAACGCGTTCCGCGCGGAACGGAGGGTGCGGTAAG
CGTTGAAGGTACTCTAGCCGGTATCATAGCTGCATCCCTGGCATCAATAT
ACGCATTGTTCGTAGGTTTGATATTCAGTCCTATACACGTGATAATTTGT
GTTGCTGCTTCATTTATTGCTACAACAGCGGAAAGCTTTATCGGTGCTAC
CATACAAGAACGATTTGGATGGTCGAATGAATTTGTTAACTTTGTGAACA
CTCTCATTGGAGCTATTGTTGCGATGGGGTTGTATGTTGTGTTTAGCTTA
TGA

Coding sequence (CDS) from alignment at tig00000908_pilon:263221..264273+

>Ggra3974.t1 ID=Ggra3974.t1|Name=Ggra3974.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000908_pilon:263221..264273+ (Gracilaria gracilis GNS1m male)
ATGGCCCCACGGCGCGTAGGCGGAAAAGAGAGCTCGCTCATAAAACCCAA
AACACGTCGCGCCATTTCGCTACCTACGGTGTACTACCTTCAGCGGCAAC
AGTCGAACTTGGCGTCGACCGCCATGCATCGCCGCCACTACTCGCGTGCT
GCCTTCTGCATCACGCCGCTACCACCGCGGCTACGACGACGTCGTGCCCA
AATTCGTCTTCAAAGACCGCTGCCCAAGGCGCCTCCTCTCCGGCGTGTGT
CGCCAACAAGCAATTTGCAGGTGGTTACTGCTTTGAAAACGTCTTCCATT
GCTCAAGCGCTTACTTTCAACTCGTGTTTACTGGTGAGTGCGAACCTTTT
ACACCAAAATGTGCTCACCCAAACTGGGCTGTATCACGCGTTTGTTCTCG
GCGTGATCTTGTGGTCCTGTTTGTCATGGCCTGGATTTTCTTTATGTTTC
GCATTTCTCATACTTGGGTCGGGGGTCACCCGCATTGGACGTCAGAAGAA
AGAGGCACTGGGTATTGCGGAGAAACGAGGGGGTGCACGAGGGCCAGAGA
ATCTTTGGGGCGCGGCTGCGGTGTCTGCGATCTGCGCCCTTGGCGTTGCG
TTTGTTCCCTTCCTCTCTCGGGGGTGGGGTGATGCGGTACGTGAAATGCT
CACTTCTGCGTTGTTGATTGGATACACTTCATCACTGGCCACCAAGTTTG
CCGATACCACTTCGAGCGAGATTGGAAAGGCGTATGGAAGCGCTACATAT
CTAATTACGTCGTTACAACGCGTTCCGCGCGGAACGGAGGGTGCGGTAAG
CGTTGAAGGTACTCTAGCCGGTATCATAGCTGCATCCCTGGCATCAATAT
ACGCATTGTTCGTAGGTTTGATATTCAGTCCTATACACGTGATAATTTGT
GTTGCTGCTTCATTTATTGCTACAACAGCGGAAAGCTTTATCGGTGCTAC
CATACAAGAACGATTTGGATGGTCGAATGAATTTGTTAACTTTGTGAACA
CTCTCATTGGAGCTATTGTTGCGATGGGGTTGTATGTTGTGTTTAGCTTA
TGA