Ggra3972.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3972.t1
Unique Name	Ggra3972.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:256756..258819 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002612504.1
Preferred name	ANO10
PFAMs	Anoctamin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19327
KEGG TC	1.A.17.1
GOs	GO:0003674,GO:0005215,GO:0005216,GO:0005227,GO:0005229,GO:0005253,GO:0005254,GO:0005261,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006821,GO:0008150,GO:0008324,GO:0008509,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015698,GO:0016020,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0061778,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:1902476
Evalue	1.46e-70
EggNOG OGs	KOG2513@1\|root,KOG2513@2759\|Eukaryota,38FVF@33154\|Opisthokonta,3BCCI@33208\|Metazoa,3CRYT@33213\|Bilateria,48012@7711\|Chordata
Description	Anoctamin 10
COG category	D
BRITE	ko00000,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3972	Ggra3972	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 256756..258819 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3972.t1.start1	Ggra3972.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 256756..256758 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3972.t1.CDS1	Ggra3972.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 256756..258819 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3972.t1.exon1	Ggra3972.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 256756..258819 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3972.t1.stop1	Ggra3972.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 258817..258819 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3972.t1	Ggra3972.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 256756..258819 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:256756..258819+
coding sequence from alignment at tig00000908_pilon:256756..258819+

mRNA sequence

>Ggra3972.t1 ID=Ggra3972.t1|Name=Ggra3972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=688bp
MDDAGLRRRRGQPDDADARAAAPAVPAASAAKSAVDSGVDYSDLPPATMA
AAFYTSKGIELLNFAKRKVEQHGVSTRLVAPNSEYNVLLMNLPYANMLST
AEELGLRKRDLEGNIRTFRAADVDVFVSSVDTSMLFSQSEQLLCLEYRLD
RIKPDSNFDDVLGNESILEWCKRQHYLNDVFPLHDPIAATQIMSELSFGN
PLYDVGGISKLQDYFGDKVALYFCFLVFYTKMLVTCAIAGGTASMLSYLF
PSRSSVLLFLYSIFSTLWAALLTSLWKRKNVEIVYMWTSLIMGDSSDMSL
MSMTKKEDLRRKFFGVEVSHRITGEKIVVFPKRQRLMRLAVSFVVVLISL
FVSIRLMMAGLDFEDVMNNWLETKADLYKWSSPVFMKTIVLKNVPLVVYL
ACLNILNMAYNIIAKKLTENENHKYNSEHENSLVLKLVLFQFLNMNMAYL
YVAFVRRDYERLASSIRSVLLVELVIGNIKETVIPIFLARRRRQAKLDDA
LKKKKEQNPDLDESECFVKPSDLDPISTQLEMEPDSGVFEDYFELVRQFS
QITLFAAAFPLGALLAAINNFIEVYTDTYKLIYMTRRSSPRRALDIGAWV
RAFEFISVVSIMTNLGIITVTGEHAHAVVGKGIPKTEEYFWMIAIEHVLL
VVRVGLMTMYEGIPSWVRDQRAKERYLASKKSRSQTS*

spliced messenger RNA

>Ggra3972.t1 ID=Ggra3972.t1|Name=Ggra3972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000908_pilon:256756..258819+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGCTGGCCTTCGACGTCGCCGCGGCCAGCCCGATGACGCTGA
TGCGCGAGCCGCCGCGCCGGCTGTTCCCGCCGCTTCCGCCGCCAAGAGCG
CGGTGGATAGTGGCGTTGATTACTCTGATTTGCCACCGGCTACTATGGCC
GCTGCTTTCTATACCTCCAAGGGGATCGAACTGCTCAATTTTGCCAAGCG
AAAGGTTGAACAACATGGTGTTAGCACGCGCTTGGTTGCACCCAATTCCG
AGTACAATGTGTTGCTCATGAACTTGCCGTATGCCAATATGCTTTCCACT
GCAGAGGAGCTTGGCTTGAGGAAGCGTGATCTCGAGGGTAACATTCGAAC
ATTCCGTGCTGCCGATGTCGATGTGTTTGTATCTTCCGTAGATACTTCCA
TGCTCTTCTCGCAGAGCGAACAGTTGTTGTGTCTTGAGTATCGCCTCGAT
CGAATCAAGCCCGATTCTAACTTTGATGATGTGTTAGGCAACGAGAGTAT
CCTAGAGTGGTGCAAGCGTCAACATTATCTTAATGATGTGTTCCCCCTTC
ATGACCCTATTGCTGCCACTCAAATCATGTCCGAGCTTTCGTTTGGAAAT
CCTCTGTACGATGTGGGTGGCATTTCCAAACTGCAGGACTACTTTGGAGA
CAAGGTCGCCCTATATTTCTGCTTCCTTGTGTTCTATACCAAGATGCTTG
TTACATGTGCAATCGCGGGTGGCACTGCTTCGATGCTCTCGTACTTGTTT
CCTTCTCGCTCTTCGGTTCTTCTTTTCTTGTACAGTATCTTTTCCACGTT
GTGGGCAGCTCTTCTCACAAGTTTATGGAAGCGTAAGAATGTTGAGATTG
TGTATATGTGGACTTCTCTCATCATGGGTGATTCTTCGGATATGTCTCTC
ATGTCCATGACGAAGAAGGAGGACCTACGTCGCAAGTTTTTCGGCGTTGA
GGTCAGTCATCGTATCACTGGTGAGAAAATTGTCGTATTTCCCAAGCGAC
AGAGACTGATGCGTCTGGCTGTGTCCTTTGTTGTCGTTCTGATTTCCCTC
TTCGTGTCCATTCGCCTCATGATGGCTGGACTTGACTTTGAAGATGTCAT
GAACAACTGGCTTGAAACCAAAGCTGATTTGTACAAGTGGTCTTCTCCCG
TCTTTATGAAAACGATCGTTCTCAAGAATGTTCCGCTTGTTGTTTATCTT
GCCTGTCTCAATATCTTGAACATGGCTTACAACATTATTGCGAAGAAGCT
CACTGAGAACGAAAACCACAAATACAATTCCGAGCATGAGAACAGCTTGG
TACTTAAGCTTGTGTTGTTCCAGTTCTTGAACATGAACATGGCCTACTTG
TACGTGGCCTTTGTACGACGCGATTACGAGCGCCTTGCTTCCTCTATTCG
CTCTGTTCTTTTGGTGGAACTTGTCATCGGAAATATCAAAGAGACTGTCA
TTCCCATCTTTCTCGCCCGTCGTCGAAGACAGGCCAAGCTTGATGACGCT
CTGAAGAAGAAGAAGGAACAAAACCCAGATCTTGACGAATCGGAATGTTT
CGTTAAGCCTTCTGACCTTGACCCTATATCCACGCAGCTCGAAATGGAAC
CTGACAGTGGCGTTTTCGAAGACTACTTTGAATTGGTGCGCCAGTTCTCC
CAAATTACTCTCTTTGCGGCTGCGTTTCCTCTGGGTGCCTTACTGGCTGC
GATCAACAACTTCATCGAGGTCTACACCGATACGTACAAGCTGATCTACA
TGACCCGGCGTTCTTCACCTCGCCGTGCGCTCGACATTGGTGCTTGGGTC
CGGGCGTTTGAGTTCATTTCGGTGGTGTCCATTATGACTAATCTTGGCAT
CATTACGGTTACCGGTGAACATGCACATGCCGTGGTTGGGAAGGGTATCC
CCAAAACAGAAGAATACTTCTGGATGATTGCTATTGAGCATGTTCTGTTA
GTTGTTCGAGTTGGACTGATGACCATGTATGAGGGCATCCCTTCATGGGT
TCGCGACCAACGTGCCAAAGAGCGATATCTCGCTTCCAAGAAATCCAGGT
CTCAAACGTCTTGA

protein sequence of Ggra3972.t1

>Ggra3972.t1 ID=Ggra3972.t1|Name=Ggra3972.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=688bp
MDDAGLRRRRGQPDDADARAAAPAVPAASAAKSAVDSGVDYSDLPPATMA
AAFYTSKGIELLNFAKRKVEQHGVSTRLVAPNSEYNVLLMNLPYANMLST
AEELGLRKRDLEGNIRTFRAADVDVFVSSVDTSMLFSQSEQLLCLEYRLD
RIKPDSNFDDVLGNESILEWCKRQHYLNDVFPLHDPIAATQIMSELSFGN
PLYDVGGISKLQDYFGDKVALYFCFLVFYTKMLVTCAIAGGTASMLSYLF
PSRSSVLLFLYSIFSTLWAALLTSLWKRKNVEIVYMWTSLIMGDSSDMSL
MSMTKKEDLRRKFFGVEVSHRITGEKIVVFPKRQRLMRLAVSFVVVLISL
FVSIRLMMAGLDFEDVMNNWLETKADLYKWSSPVFMKTIVLKNVPLVVYL
ACLNILNMAYNIIAKKLTENENHKYNSEHENSLVLKLVLFQFLNMNMAYL
YVAFVRRDYERLASSIRSVLLVELVIGNIKETVIPIFLARRRRQAKLDDA
LKKKKEQNPDLDESECFVKPSDLDPISTQLEMEPDSGVFEDYFELVRQFS
QITLFAAAFPLGALLAAINNFIEVYTDTYKLIYMTRRSSPRRALDIGAWV
RAFEFISVVSIMTNLGIITVTGEHAHAVVGKGIPKTEEYFWMIAIEHVLL
VVRVGLMTMYEGIPSWVRDQRAKERYLASKKSRSQTS*

mRNA from alignment at tig00000908_pilon:256756..258819+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3972.t1 ID=Ggra3972.t1|Name=Ggra3972.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000908_pilon:256756..258819+ (Gracilaria gracilis GNS1m male)
ATGGACGACGCTGGCCTTCGACGTCGCCGCGGCCAGCCCGATGACGCTGA
TGCGCGAGCCGCCGCGCCGGCTGTTCCCGCCGCTTCCGCCGCCAAGAGCG
CGGTGGATAGTGGCGTTGATTACTCTGATTTGCCACCGGCTACTATGGCC
GCTGCTTTCTATACCTCCAAGGGGATCGAACTGCTCAATTTTGCCAAGCG
AAAGGTTGAACAACATGGTGTTAGCACGCGCTTGGTTGCACCCAATTCCG
AGTACAATGTGTTGCTCATGAACTTGCCGTATGCCAATATGCTTTCCACT
GCAGAGGAGCTTGGCTTGAGGAAGCGTGATCTCGAGGGTAACATTCGAAC
ATTCCGTGCTGCCGATGTCGATGTGTTTGTATCTTCCGTAGATACTTCCA
TGCTCTTCTCGCAGAGCGAACAGTTGTTGTGTCTTGAGTATCGCCTCGAT
CGAATCAAGCCCGATTCTAACTTTGATGATGTGTTAGGCAACGAGAGTAT
CCTAGAGTGGTGCAAGCGTCAACATTATCTTAATGATGTGTTCCCCCTTC
ATGACCCTATTGCTGCCACTCAAATCATGTCCGAGCTTTCGTTTGGAAAT
CCTCTGTACGATGTGGGTGGCATTTCCAAACTGCAGGACTACTTTGGAGA
CAAGGTCGCCCTATATTTCTGCTTCCTTGTGTTCTATACCAAGATGCTTG
TTACATGTGCAATCGCGGGTGGCACTGCTTCGATGCTCTCGTACTTGTTT
CCTTCTCGCTCTTCGGTTCTTCTTTTCTTGTACAGTATCTTTTCCACGTT
GTGGGCAGCTCTTCTCACAAGTTTATGGAAGCGTAAGAATGTTGAGATTG
TGTATATGTGGACTTCTCTCATCATGGGTGATTCTTCGGATATGTCTCTC
ATGTCCATGACGAAGAAGGAGGACCTACGTCGCAAGTTTTTCGGCGTTGA
GGTCAGTCATCGTATCACTGGTGAGAAAATTGTCGTATTTCCCAAGCGAC
AGAGACTGATGCGTCTGGCTGTGTCCTTTGTTGTCGTTCTGATTTCCCTC
TTCGTGTCCATTCGCCTCATGATGGCTGGACTTGACTTTGAAGATGTCAT
GAACAACTGGCTTGAAACCAAAGCTGATTTGTACAAGTGGTCTTCTCCCG
TCTTTATGAAAACGATCGTTCTCAAGAATGTTCCGCTTGTTGTTTATCTT
GCCTGTCTCAATATCTTGAACATGGCTTACAACATTATTGCGAAGAAGCT
CACTGAGAACGAAAACCACAAATACAATTCCGAGCATGAGAACAGCTTGG
TACTTAAGCTTGTGTTGTTCCAGTTCTTGAACATGAACATGGCCTACTTG
TACGTGGCCTTTGTACGACGCGATTACGAGCGCCTTGCTTCCTCTATTCG
CTCTGTTCTTTTGGTGGAACTTGTCATCGGAAATATCAAAGAGACTGTCA
TTCCCATCTTTCTCGCCCGTCGTCGAAGACAGGCCAAGCTTGATGACGCT
CTGAAGAAGAAGAAGGAACAAAACCCAGATCTTGACGAATCGGAATGTTT
CGTTAAGCCTTCTGACCTTGACCCTATATCCACGCAGCTCGAAATGGAAC
CTGACAGTGGCGTTTTCGAAGACTACTTTGAATTGGTGCGCCAGTTCTCC
CAAATTACTCTCTTTGCGGCTGCGTTTCCTCTGGGTGCCTTACTGGCTGC
GATCAACAACTTCATCGAGGTCTACACCGATACGTACAAGCTGATCTACA
TGACCCGGCGTTCTTCACCTCGCCGTGCGCTCGACATTGGTGCTTGGGTC
CGGGCGTTTGAGTTCATTTCGGTGGTGTCCATTATGACTAATCTTGGCAT
CATTACGGTTACCGGTGAACATGCACATGCCGTGGTTGGGAAGGGTATCC
CCAAAACAGAAGAATACTTCTGGATGATTGCTATTGAGCATGTTCTGTTA
GTTGTTCGAGTTGGACTGATGACCATGTATGAGGGCATCCCTTCATGGGT
TCGCGACCAACGTGCCAAAGAGCGATATCTCGCTTCCAAGAAATCCAGGT
CTCAAACGTCTTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:256756..258819+

>Ggra3972.t1 ID=Ggra3972.t1|Name=Ggra3972.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00000908_pilon:256756..258819+ (Gracilaria gracilis GNS1m male)
ATGGACGACGCTGGCCTTCGACGTCGCCGCGGCCAGCCCGATGACGCTGA
TGCGCGAGCCGCCGCGCCGGCTGTTCCCGCCGCTTCCGCCGCCAAGAGCG
CGGTGGATAGTGGCGTTGATTACTCTGATTTGCCACCGGCTACTATGGCC
GCTGCTTTCTATACCTCCAAGGGGATCGAACTGCTCAATTTTGCCAAGCG
AAAGGTTGAACAACATGGTGTTAGCACGCGCTTGGTTGCACCCAATTCCG
AGTACAATGTGTTGCTCATGAACTTGCCGTATGCCAATATGCTTTCCACT
GCAGAGGAGCTTGGCTTGAGGAAGCGTGATCTCGAGGGTAACATTCGAAC
ATTCCGTGCTGCCGATGTCGATGTGTTTGTATCTTCCGTAGATACTTCCA
TGCTCTTCTCGCAGAGCGAACAGTTGTTGTGTCTTGAGTATCGCCTCGAT
CGAATCAAGCCCGATTCTAACTTTGATGATGTGTTAGGCAACGAGAGTAT
CCTAGAGTGGTGCAAGCGTCAACATTATCTTAATGATGTGTTCCCCCTTC
ATGACCCTATTGCTGCCACTCAAATCATGTCCGAGCTTTCGTTTGGAAAT
CCTCTGTACGATGTGGGTGGCATTTCCAAACTGCAGGACTACTTTGGAGA
CAAGGTCGCCCTATATTTCTGCTTCCTTGTGTTCTATACCAAGATGCTTG
TTACATGTGCAATCGCGGGTGGCACTGCTTCGATGCTCTCGTACTTGTTT
CCTTCTCGCTCTTCGGTTCTTCTTTTCTTGTACAGTATCTTTTCCACGTT
GTGGGCAGCTCTTCTCACAAGTTTATGGAAGCGTAAGAATGTTGAGATTG
TGTATATGTGGACTTCTCTCATCATGGGTGATTCTTCGGATATGTCTCTC
ATGTCCATGACGAAGAAGGAGGACCTACGTCGCAAGTTTTTCGGCGTTGA
GGTCAGTCATCGTATCACTGGTGAGAAAATTGTCGTATTTCCCAAGCGAC
AGAGACTGATGCGTCTGGCTGTGTCCTTTGTTGTCGTTCTGATTTCCCTC
TTCGTGTCCATTCGCCTCATGATGGCTGGACTTGACTTTGAAGATGTCAT
GAACAACTGGCTTGAAACCAAAGCTGATTTGTACAAGTGGTCTTCTCCCG
TCTTTATGAAAACGATCGTTCTCAAGAATGTTCCGCTTGTTGTTTATCTT
GCCTGTCTCAATATCTTGAACATGGCTTACAACATTATTGCGAAGAAGCT
CACTGAGAACGAAAACCACAAATACAATTCCGAGCATGAGAACAGCTTGG
TACTTAAGCTTGTGTTGTTCCAGTTCTTGAACATGAACATGGCCTACTTG
TACGTGGCCTTTGTACGACGCGATTACGAGCGCCTTGCTTCCTCTATTCG
CTCTGTTCTTTTGGTGGAACTTGTCATCGGAAATATCAAAGAGACTGTCA
TTCCCATCTTTCTCGCCCGTCGTCGAAGACAGGCCAAGCTTGATGACGCT
CTGAAGAAGAAGAAGGAACAAAACCCAGATCTTGACGAATCGGAATGTTT
CGTTAAGCCTTCTGACCTTGACCCTATATCCACGCAGCTCGAAATGGAAC
CTGACAGTGGCGTTTTCGAAGACTACTTTGAATTGGTGCGCCAGTTCTCC
CAAATTACTCTCTTTGCGGCTGCGTTTCCTCTGGGTGCCTTACTGGCTGC
GATCAACAACTTCATCGAGGTCTACACCGATACGTACAAGCTGATCTACA
TGACCCGGCGTTCTTCACCTCGCCGTGCGCTCGACATTGGTGCTTGGGTC
CGGGCGTTTGAGTTCATTTCGGTGGTGTCCATTATGACTAATCTTGGCAT
CATTACGGTTACCGGTGAACATGCACATGCCGTGGTTGGGAAGGGTATCC
CCAAAACAGAAGAATACTTCTGGATGATTGCTATTGAGCATGTTCTGTTA
GTTGTTCGAGTTGGACTGATGACCATGTATGAGGGCATCCCTTCATGGGT
TCGCGACCAACGTGCCAAAGAGCGATATCTCGCTTCCAAGAAATCCAGGT
CTCAAACGTCTTGA