Ggra3968.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3968.t1
Unique NameGgra3968.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:239872..240405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3968Ggra3968Gracilaria gracilis GNS1m malegenetig00000908_pilon 239872..240405 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3968.t1.start1Ggra3968.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 239872..239874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3968.t1.CDS1Ggra3968.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 239872..240405 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3968.t1.exon1Ggra3968.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 239872..240405 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3968.t1.stop1Ggra3968.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 240403..240405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3968.t1Ggra3968.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 239872..240405 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3968.t1 ID=Ggra3968.t1|Name=Ggra3968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MPGGSSNERKDKKRAEGPTIVGALRWLFRDDGESTSDKDRKIRSAMRERA
LKNCKIHVNEDEYIDRDLYGRADPRILKSYVDRELGNGQTNTSRKHGIFH
NKFGAFVGRKVRSLFRKLSDRVANCKNCGSHVQTDANDSMNSVDDVSKNR
TQKSDIAERVTAKVVVTTVARSPAGNA*
back to top

spliced messenger RNA

>Ggra3968.t1 ID=Ggra3968.t1|Name=Ggra3968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000908_pilon:239872..240405+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGGAGGTAGTTCGAACGAAAGGAAAGACAAGAAGCGCGCTGAAGG
GCCCACCATTGTCGGTGCTCTTCGCTGGCTTTTCAGAGATGATGGGGAAA
GTACGTCCGACAAAGATCGTAAAATACGCTCTGCTATGCGAGAGAGGGCT
CTGAAGAATTGCAAGATCCATGTCAATGAAGACGAATACATTGATCGTGA
TCTTTACGGCCGCGCTGATCCCAGAATTCTCAAGAGTTACGTGGACAGGG
AACTTGGCAATGGACAAACTAACACATCAAGGAAACATGGCATCTTCCAC
AACAAATTCGGTGCTTTTGTTGGGAGAAAAGTCCGCTCTCTATTCCGAAA
GCTGTCTGACCGAGTTGCAAACTGCAAAAACTGCGGTAGTCACGTTCAAA
CTGATGCCAATGATTCTATGAATAGTGTCGATGACGTATCCAAGAATCGC
ACTCAGAAGTCGGATATAGCGGAAAGGGTTACTGCAAAGGTCGTCGTTAC
CACCGTCGCTCGGAGTCCGGCGGGCAATGCCTAG
back to top

protein sequence of Ggra3968.t1

>Ggra3968.t1 ID=Ggra3968.t1|Name=Ggra3968.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MPGGSSNERKDKKRAEGPTIVGALRWLFRDDGESTSDKDRKIRSAMRERA
LKNCKIHVNEDEYIDRDLYGRADPRILKSYVDRELGNGQTNTSRKHGIFH
NKFGAFVGRKVRSLFRKLSDRVANCKNCGSHVQTDANDSMNSVDDVSKNR
TQKSDIAERVTAKVVVTTVARSPAGNA*
back to top

mRNA from alignment at tig00000908_pilon:239872..240405+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3968.t1 ID=Ggra3968.t1|Name=Ggra3968.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000908_pilon:239872..240405+ (Gracilaria gracilis GNS1m male)
ATGCCAGGAGGTAGTTCGAACGAAAGGAAAGACAAGAAGCGCGCTGAAGG
GCCCACCATTGTCGGTGCTCTTCGCTGGCTTTTCAGAGATGATGGGGAAA
GTACGTCCGACAAAGATCGTAAAATACGCTCTGCTATGCGAGAGAGGGCT
CTGAAGAATTGCAAGATCCATGTCAATGAAGACGAATACATTGATCGTGA
TCTTTACGGCCGCGCTGATCCCAGAATTCTCAAGAGTTACGTGGACAGGG
AACTTGGCAATGGACAAACTAACACATCAAGGAAACATGGCATCTTCCAC
AACAAATTCGGTGCTTTTGTTGGGAGAAAAGTCCGCTCTCTATTCCGAAA
GCTGTCTGACCGAGTTGCAAACTGCAAAAACTGCGGTAGTCACGTTCAAA
CTGATGCCAATGATTCTATGAATAGTGTCGATGACGTATCCAAGAATCGC
ACTCAGAAGTCGGATATAGCGGAAAGGGTTACTGCAAAGGTCGTCGTTAC
CACCGTCGCTCGGAGTCCGGCGGGCAATGCCTAG
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:239872..240405+

>Ggra3968.t1 ID=Ggra3968.t1|Name=Ggra3968.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000908_pilon:239872..240405+ (Gracilaria gracilis GNS1m male)
ATGCCAGGAGGTAGTTCGAACGAAAGGAAAGACAAGAAGCGCGCTGAAGG
GCCCACCATTGTCGGTGCTCTTCGCTGGCTTTTCAGAGATGATGGGGAAA
GTACGTCCGACAAAGATCGTAAAATACGCTCTGCTATGCGAGAGAGGGCT
CTGAAGAATTGCAAGATCCATGTCAATGAAGACGAATACATTGATCGTGA
TCTTTACGGCCGCGCTGATCCCAGAATTCTCAAGAGTTACGTGGACAGGG
AACTTGGCAATGGACAAACTAACACATCAAGGAAACATGGCATCTTCCAC
AACAAATTCGGTGCTTTTGTTGGGAGAAAAGTCCGCTCTCTATTCCGAAA
GCTGTCTGACCGAGTTGCAAACTGCAAAAACTGCGGTAGTCACGTTCAAA
CTGATGCCAATGATTCTATGAATAGTGTCGATGACGTATCCAAGAATCGC
ACTCAGAAGTCGGATATAGCGGAAAGGGTTACTGCAAAGGTCGTCGTTAC
CACCGTCGCTCGGAGTCCGGCGGGCAATGCCTAG
back to top