Ggra3963.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3963.t1
Unique NameGgra3963.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:226450..227088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121403.AUCV01000021_gene3619
Max annot lvl2|Bacteria
Evalue3.26e-51
EggNOG OGs2BM45@1|root,32FMH@2|Bacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3963Ggra3963Gracilaria gracilis GNS1m malegenetig00000908_pilon 226450..227088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3963.t1.stop1Ggra3963.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 226450..226452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3963.t1.CDS1Ggra3963.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 226450..227088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3963.t1.exon1Ggra3963.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 226450..227088 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3963.t1.start1Ggra3963.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 227086..227088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3963.t1Ggra3963.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 226450..227088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3963.t1 ID=Ggra3963.t1|Name=Ggra3963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MPAGAETMTLTKALVELKLLTKRIDKKIDTIKFIAVKKGDSLPASIKSQP
EFEREQRAAWQSLNDLMTRRRKIKTALVVANAITHVEIAGERMTIAEAIE
RKDLVSTEQNILRCMQIALVDGEREVDCHNRLIDERVAKLLETSYGNRDG
QLSKEDYERIARPFKEGSKATLIDPLNCSKLTEKLEEKINDFLSEVDVCL
SIANATTKIDII*
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spliced messenger RNA

>Ggra3963.t1 ID=Ggra3963.t1|Name=Ggra3963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000908_pilon:226450..227088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCTGGTGCGGAAACTATGACACTCACTAAGGCGTTGGTGGAGCT
CAAGCTGCTCACAAAGCGAATCGACAAGAAGATTGACACCATCAAATTCA
TCGCCGTCAAGAAGGGTGATTCCCTCCCAGCTTCAATCAAGTCACAGCCC
GAATTTGAAAGAGAGCAACGCGCGGCCTGGCAGTCGCTGAATGATCTCAT
GACCAGACGCCGTAAGATCAAAACCGCTCTCGTCGTCGCTAATGCTATCA
CTCACGTGGAGATCGCTGGAGAGAGAATGACAATTGCTGAGGCGATTGAG
AGAAAGGATCTCGTCAGTACCGAACAGAACATTCTCAGATGCATGCAGAT
CGCCTTGGTAGACGGAGAACGGGAAGTGGATTGTCACAACAGACTTATCG
ATGAACGCGTTGCCAAGCTGCTGGAAACTTCGTACGGTAATCGTGACGGC
CAGCTTTCAAAGGAGGATTATGAGAGAATAGCCCGCCCTTTCAAGGAGGG
AAGTAAGGCCACGCTTATCGACCCACTCAATTGTTCCAAACTCACCGAGA
AGCTCGAGGAGAAGATTAACGACTTTCTATCGGAGGTAGACGTGTGTCTG
AGCATTGCAAACGCAACCACCAAGATCGACATAATATAA
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protein sequence of Ggra3963.t1

>Ggra3963.t1 ID=Ggra3963.t1|Name=Ggra3963.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MPAGAETMTLTKALVELKLLTKRIDKKIDTIKFIAVKKGDSLPASIKSQP
EFEREQRAAWQSLNDLMTRRRKIKTALVVANAITHVEIAGERMTIAEAIE
RKDLVSTEQNILRCMQIALVDGEREVDCHNRLIDERVAKLLETSYGNRDG
QLSKEDYERIARPFKEGSKATLIDPLNCSKLTEKLEEKINDFLSEVDVCL
SIANATTKIDII*
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mRNA from alignment at tig00000908_pilon:226450..227088-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3963.t1 ID=Ggra3963.t1|Name=Ggra3963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000908_pilon:226450..227088- (Gracilaria gracilis GNS1m male)
ATGCCCGCTGGTGCGGAAACTATGACACTCACTAAGGCGTTGGTGGAGCT
CAAGCTGCTCACAAAGCGAATCGACAAGAAGATTGACACCATCAAATTCA
TCGCCGTCAAGAAGGGTGATTCCCTCCCAGCTTCAATCAAGTCACAGCCC
GAATTTGAAAGAGAGCAACGCGCGGCCTGGCAGTCGCTGAATGATCTCAT
GACCAGACGCCGTAAGATCAAAACCGCTCTCGTCGTCGCTAATGCTATCA
CTCACGTGGAGATCGCTGGAGAGAGAATGACAATTGCTGAGGCGATTGAG
AGAAAGGATCTCGTCAGTACCGAACAGAACATTCTCAGATGCATGCAGAT
CGCCTTGGTAGACGGAGAACGGGAAGTGGATTGTCACAACAGACTTATCG
ATGAACGCGTTGCCAAGCTGCTGGAAACTTCGTACGGTAATCGTGACGGC
CAGCTTTCAAAGGAGGATTATGAGAGAATAGCCCGCCCTTTCAAGGAGGG
AAGTAAGGCCACGCTTATCGACCCACTCAATTGTTCCAAACTCACCGAGA
AGCTCGAGGAGAAGATTAACGACTTTCTATCGGAGGTAGACGTGTGTCTG
AGCATTGCAAACGCAACCACCAAGATCGACATAATATAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:226450..227088-

>Ggra3963.t1 ID=Ggra3963.t1|Name=Ggra3963.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000908_pilon:226450..227088- (Gracilaria gracilis GNS1m male)
ATGCCCGCTGGTGCGGAAACTATGACACTCACTAAGGCGTTGGTGGAGCT
CAAGCTGCTCACAAAGCGAATCGACAAGAAGATTGACACCATCAAATTCA
TCGCCGTCAAGAAGGGTGATTCCCTCCCAGCTTCAATCAAGTCACAGCCC
GAATTTGAAAGAGAGCAACGCGCGGCCTGGCAGTCGCTGAATGATCTCAT
GACCAGACGCCGTAAGATCAAAACCGCTCTCGTCGTCGCTAATGCTATCA
CTCACGTGGAGATCGCTGGAGAGAGAATGACAATTGCTGAGGCGATTGAG
AGAAAGGATCTCGTCAGTACCGAACAGAACATTCTCAGATGCATGCAGAT
CGCCTTGGTAGACGGAGAACGGGAAGTGGATTGTCACAACAGACTTATCG
ATGAACGCGTTGCCAAGCTGCTGGAAACTTCGTACGGTAATCGTGACGGC
CAGCTTTCAAAGGAGGATTATGAGAGAATAGCCCGCCCTTTCAAGGAGGG
AAGTAAGGCCACGCTTATCGACCCACTCAATTGTTCCAAACTCACCGAGA
AGCTCGAGGAGAAGATTAACGACTTTCTATCGGAGGTAGACGTGTGTCTG
AGCATTGCAAACGCAACCACCAAGATCGACATAATATAA
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